data_5EUZ # _model_server_result.job_id 2eBIqlynUyL0IgvVquDUqg _model_server_result.datetime_utc '2024-10-20 19:53:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5euz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":808}' # _entry.id 5EUZ # _exptl.entry_id 5EUZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EUZ _cell.length_a 61.911 _cell.length_b 61.911 _cell.length_c 66.49 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 76 A PHE 651 1_555 A N MSE 77 A MSE 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 77 A MSE 652 1_555 A N ASP 78 A ASP 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5EUZ _atom_sites.fract_transf_matrix[1][1] 0.016152 _atom_sites.fract_transf_matrix[1][2] 0.009325 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 801 1 IOD IOD . C 2 IOD A 1 802 2 IOD IOD . D 2 IOD A 1 803 3 IOD IOD . E 2 IOD A 1 804 4 IOD IOD . F 3 EDO A 1 805 1 EDO EDO . G 3 EDO A 1 806 3 EDO EDO . H 3 EDO A 1 807 4 EDO EDO . I 3 EDO A 1 808 5 EDO EDO . J 3 EDO A 1 809 6 EDO EDO . K 4 PGE A 1 810 1 PGE PGE . L 5 PEG A 1 811 1 PEG PEG . M 5 PEG A 1 812 2 PEG PEG . N 6 HOH A 1 901 16 HOH HOH . N 6 HOH A 2 902 17 HOH HOH . N 6 HOH A 3 903 11 HOH HOH . N 6 HOH A 4 904 6 HOH HOH . N 6 HOH A 5 905 24 HOH HOH . N 6 HOH A 6 906 7 HOH HOH . N 6 HOH A 7 907 4 HOH HOH . N 6 HOH A 8 908 23 HOH HOH . N 6 HOH A 9 909 5 HOH HOH . N 6 HOH A 10 910 14 HOH HOH . N 6 HOH A 11 911 1 HOH HOH . N 6 HOH A 12 912 10 HOH HOH . N 6 HOH A 13 913 27 HOH HOH . N 6 HOH A 14 914 8 HOH HOH . N 6 HOH A 15 915 22 HOH HOH . N 6 HOH A 16 916 21 HOH HOH . N 6 HOH A 17 917 13 HOH HOH . N 6 HOH A 18 918 15 HOH HOH . N 6 HOH A 19 919 9 HOH HOH . N 6 HOH A 20 920 20 HOH HOH . N 6 HOH A 21 921 25 HOH HOH . N 6 HOH A 22 922 28 HOH HOH . N 6 HOH A 23 923 19 HOH HOH . N 6 HOH A 24 924 41 HOH HOH . N 6 HOH A 25 925 3 HOH HOH . N 6 HOH A 26 926 37 HOH HOH . N 6 HOH A 27 927 31 HOH HOH . N 6 HOH A 28 928 26 HOH HOH . N 6 HOH A 29 929 42 HOH HOH . N 6 HOH A 30 930 38 HOH HOH . N 6 HOH A 31 931 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 -7.46 55.374 58.785 1 54.91 ? C1 EDO 808 A 1 HETATM 2 O O1 EDO . . . I 3 -8.098 55.591 60.048 1 54.85 ? O1 EDO 808 A 1 HETATM 3 C C2 EDO . . . I 3 -6.964 56.717 58.249 1 54.91 ? C2 EDO 808 A 1 HETATM 4 O O2 EDO . . . I 3 -5.531 56.762 58.305 1 54.89 ? O2 EDO 808 A 1 HETATM 5 H H11 EDO . . . I 3 -6.62 54.687 58.906 1 65.89 ? H11 EDO 808 A 1 HETATM 6 H H12 EDO . . . I 3 -8.168 54.931 58.081 1 65.89 ? H12 EDO 808 A 1 HETATM 7 H HO1 EDO . . . I 3 -8.417 54.748 60.397 1 65.82 ? HO1 EDO 808 A 1 HETATM 8 H H21 EDO . . . I 3 -7.296 56.847 57.217 1 65.89 ? H21 EDO 808 A 1 HETATM 9 H H22 EDO . . . I 3 -7.382 57.53 58.846 1 65.89 ? H22 EDO 808 A 1 HETATM 10 H HO2 EDO . . . I 3 -5.221 57.612 57.965 1 65.86 ? HO2 EDO 808 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #