data_5EV1 # _model_server_result.job_id 3wfsrCyAvQqDJod2a23sLw _model_server_result.datetime_utc '2024-10-28 02:23:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ev1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5EV1 # _exptl.entry_id 5EV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EV1 _cell.length_a 62.052 _cell.length_b 114.241 _cell.length_c 59.418 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DU 5 B DU 6 1_555 B P BRU 6 B BRU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale2 B O3' BRU 6 B BRU 7 1_555 B P DU 7 B DU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? metalc ? metalc1 A OD2 ASP 66 A ASP 206 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc2 A OD2 ASP 66 A ASP 206 1_555 C NA NA . A NA 401 3_355 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc3 B OP1 U 2 B U 3 1_555 F NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc4 B OP1 U 2 B U 3 1_555 F NA NA . B NA 101 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 305 n n C1 C2 PEG sing 306 n n C1 H11 PEG sing 307 n n C1 H12 PEG sing 308 n n O1 HO1 PEG sing 309 n n C2 O2 PEG sing 310 n n C2 H21 PEG sing 311 n n C2 H22 PEG sing 312 n n O2 C3 PEG sing 313 n n C3 C4 PEG sing 314 n n C3 H31 PEG sing 315 n n C3 H32 PEG sing 316 n n C4 O4 PEG sing 317 n n C4 H41 PEG sing 318 n n C4 H42 PEG sing 319 n n O4 HO4 PEG sing 320 n n # _atom_sites.entry_id 5EV1 _atom_sites.fract_transf_matrix[1][1] 0.016116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 401 2 NA NA . D 4 PGE A 1 402 1 PGE PGE . E 5 PEG A 1 403 2 PEG PEG . F 3 NA B 1 101 1 NA NA . G 6 HOH A 1 501 107 HOH HOH . G 6 HOH A 2 502 140 HOH HOH . G 6 HOH A 3 503 83 HOH HOH . G 6 HOH A 4 504 147 HOH HOH . G 6 HOH A 5 505 112 HOH HOH . G 6 HOH A 6 506 81 HOH HOH . G 6 HOH A 7 507 80 HOH HOH . G 6 HOH A 8 508 3 HOH HOH . G 6 HOH A 9 509 146 HOH HOH . G 6 HOH A 10 510 150 HOH HOH . G 6 HOH A 11 511 106 HOH HOH . G 6 HOH A 12 512 97 HOH HOH . G 6 HOH A 13 513 20 HOH HOH . G 6 HOH A 14 514 74 HOH HOH . G 6 HOH A 15 515 104 HOH HOH . G 6 HOH A 16 516 43 HOH HOH . G 6 HOH A 17 517 157 HOH HOH . G 6 HOH A 18 518 113 HOH HOH . G 6 HOH A 19 519 26 HOH HOH . G 6 HOH A 20 520 73 HOH HOH . G 6 HOH A 21 521 75 HOH HOH . G 6 HOH A 22 522 100 HOH HOH . G 6 HOH A 23 523 59 HOH HOH . G 6 HOH A 24 524 62 HOH HOH . G 6 HOH A 25 525 32 HOH HOH . G 6 HOH A 26 526 67 HOH HOH . G 6 HOH A 27 527 15 HOH HOH . G 6 HOH A 28 528 6 HOH HOH . G 6 HOH A 29 529 21 HOH HOH . G 6 HOH A 30 530 159 HOH HOH . G 6 HOH A 31 531 19 HOH HOH . G 6 HOH A 32 532 141 HOH HOH . G 6 HOH A 33 533 61 HOH HOH . G 6 HOH A 34 534 18 HOH HOH . G 6 HOH A 35 535 36 HOH HOH . G 6 HOH A 36 536 28 HOH HOH . G 6 HOH A 37 537 128 HOH HOH . G 6 HOH A 38 538 55 HOH HOH . G 6 HOH A 39 539 22 HOH HOH . G 6 HOH A 40 540 145 HOH HOH . G 6 HOH A 41 541 47 HOH HOH . G 6 HOH A 42 542 58 HOH HOH . G 6 HOH A 43 543 31 HOH HOH . G 6 HOH A 44 544 66 HOH HOH . G 6 HOH A 45 545 142 HOH HOH . G 6 HOH A 46 546 118 HOH HOH . G 6 HOH A 47 547 41 HOH HOH . G 6 HOH A 48 548 98 HOH HOH . G 6 HOH A 49 549 57 HOH HOH . G 6 HOH A 50 550 117 HOH HOH . G 6 HOH A 51 551 71 HOH HOH . G 6 HOH A 52 552 119 HOH HOH . G 6 HOH A 53 553 45 HOH HOH . G 6 HOH A 54 554 154 HOH HOH . G 6 HOH A 55 555 25 HOH HOH . G 6 HOH A 56 556 54 HOH HOH . G 6 HOH A 57 557 151 HOH HOH . G 6 HOH A 58 558 153 HOH HOH . G 6 HOH A 59 559 34 HOH HOH . G 6 HOH A 60 560 111 HOH HOH . G 6 HOH A 61 561 88 HOH HOH . G 6 HOH A 62 562 126 HOH HOH . G 6 HOH A 63 563 152 HOH HOH . G 6 HOH A 64 564 161 HOH HOH . G 6 HOH A 65 565 79 HOH HOH . G 6 HOH A 66 566 89 HOH HOH . G 6 HOH A 67 567 121 HOH HOH . G 6 HOH A 68 568 60 HOH HOH . G 6 HOH A 69 569 149 HOH HOH . G 6 HOH A 70 570 148 HOH HOH . G 6 HOH A 71 571 93 HOH HOH . G 6 HOH A 72 572 76 HOH HOH . G 6 HOH A 73 573 30 HOH HOH . G 6 HOH A 74 574 135 HOH HOH . G 6 HOH A 75 575 137 HOH HOH . G 6 HOH A 76 576 120 HOH HOH . G 6 HOH A 77 577 139 HOH HOH . G 6 HOH A 78 578 124 HOH HOH . G 6 HOH A 79 579 64 HOH HOH . G 6 HOH A 80 580 16 HOH HOH . G 6 HOH A 81 581 129 HOH HOH . G 6 HOH A 82 582 11 HOH HOH . G 6 HOH A 83 583 105 HOH HOH . G 6 HOH A 84 584 155 HOH HOH . G 6 HOH A 85 585 72 HOH HOH . G 6 HOH A 86 586 156 HOH HOH . G 6 HOH A 87 587 52 HOH HOH . G 6 HOH A 88 588 136 HOH HOH . G 6 HOH A 89 589 82 HOH HOH . G 6 HOH A 90 590 56 HOH HOH . G 6 HOH A 91 591 42 HOH HOH . G 6 HOH A 92 592 108 HOH HOH . G 6 HOH A 93 593 101 HOH HOH . G 6 HOH A 94 594 85 HOH HOH . G 6 HOH A 95 595 162 HOH HOH . G 6 HOH A 96 596 132 HOH HOH . G 6 HOH A 97 597 109 HOH HOH . G 6 HOH A 98 598 46 HOH HOH . G 6 HOH A 99 599 84 HOH HOH . G 6 HOH A 100 600 131 HOH HOH . H 6 HOH B 1 201 123 HOH HOH . H 6 HOH B 2 202 90 HOH HOH . H 6 HOH B 3 203 92 HOH HOH . H 6 HOH B 4 204 17 HOH HOH . H 6 HOH B 5 205 7 HOH HOH . H 6 HOH B 6 206 53 HOH HOH . H 6 HOH B 7 207 44 HOH HOH . H 6 HOH B 8 208 143 HOH HOH . H 6 HOH B 9 209 87 HOH HOH . H 6 HOH B 10 210 51 HOH HOH . H 6 HOH B 11 211 158 HOH HOH . H 6 HOH B 12 212 48 HOH HOH . H 6 HOH B 13 213 27 HOH HOH . H 6 HOH B 14 214 144 HOH HOH . H 6 HOH B 15 215 24 HOH HOH . H 6 HOH B 16 216 91 HOH HOH . H 6 HOH B 17 217 94 HOH HOH . H 6 HOH B 18 218 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . E 5 -63.323 -107.486 -4.68 1 52.7 ? C1 PEG 403 A 1 HETATM 2 O O1 PEG . . . E 5 -64.562 -108.048 -4.488 1 55.08 ? O1 PEG 403 A 1 HETATM 3 C C2 PEG . . . E 5 -63.219 -106.766 -5.997 1 44.27 ? C2 PEG 403 A 1 HETATM 4 O O2 PEG . . . E 5 -61.943 -106.909 -6.654 1 47.46 ? O2 PEG 403 A 1 HETATM 5 C C3 PEG . . . E 5 -61.85 -106.253 -7.962 1 49.25 ? C3 PEG 403 A 1 HETATM 6 C C4 PEG . . . E 5 -60.476 -106.346 -8.611 1 55.54 ? C4 PEG 403 A 1 HETATM 7 O O4 PEG . . . E 5 -60.365 -107.6 -9.255 1 53.66 ? O4 PEG 403 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #