data_5EV4 # _model_server_result.job_id RXhLujKbOUM_atZFpkcllQ _model_server_result.datetime_utc '2024-11-04 20:38:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ev4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5EV4 # _exptl.entry_id 5EV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EV4 _cell.length_a 43.502 _cell.length_b 63.411 _cell.length_c 77.662 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' U 6 B U 6 1_555 B P BRU 7 B BRU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? covale ? covale2 B O3' BRU 7 B BRU 7 1_555 B P DU 8 B DU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 233 n n C1 C2 GOL sing 234 n n C1 H11 GOL sing 235 n n C1 H12 GOL sing 236 n n O1 HO1 GOL sing 237 n n C2 O2 GOL sing 238 n n C2 C3 GOL sing 239 n n C2 H2 GOL sing 240 n n O2 HO2 GOL sing 241 n n C3 O3 GOL sing 242 n n C3 H31 GOL sing 243 n n C3 H32 GOL sing 244 n n O3 HO3 GOL sing 245 n n # _atom_sites.entry_id 5EV4 _atom_sites.fract_transf_matrix[1][1] 0.022987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 4 HOH A 1 501 185 HOH HOH . D 4 HOH A 2 502 73 HOH HOH . D 4 HOH A 3 503 157 HOH HOH . D 4 HOH A 4 504 175 HOH HOH . D 4 HOH A 5 505 122 HOH HOH . D 4 HOH A 6 506 94 HOH HOH . D 4 HOH A 7 507 46 HOH HOH . D 4 HOH A 8 508 164 HOH HOH . D 4 HOH A 9 509 127 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 36 HOH HOH . D 4 HOH A 12 512 38 HOH HOH . D 4 HOH A 13 513 59 HOH HOH . D 4 HOH A 14 514 150 HOH HOH . D 4 HOH A 15 515 128 HOH HOH . D 4 HOH A 16 516 106 HOH HOH . D 4 HOH A 17 517 89 HOH HOH . D 4 HOH A 18 518 132 HOH HOH . D 4 HOH A 19 519 39 HOH HOH . D 4 HOH A 20 520 136 HOH HOH . D 4 HOH A 21 521 137 HOH HOH . D 4 HOH A 22 522 53 HOH HOH . D 4 HOH A 23 523 23 HOH HOH . D 4 HOH A 24 524 158 HOH HOH . D 4 HOH A 25 525 43 HOH HOH . D 4 HOH A 26 526 77 HOH HOH . D 4 HOH A 27 527 93 HOH HOH . D 4 HOH A 28 528 63 HOH HOH . D 4 HOH A 29 529 192 HOH HOH . D 4 HOH A 30 530 4 HOH HOH . D 4 HOH A 31 531 48 HOH HOH . D 4 HOH A 32 532 64 HOH HOH . D 4 HOH A 33 533 139 HOH HOH . D 4 HOH A 34 534 37 HOH HOH . D 4 HOH A 35 535 61 HOH HOH . D 4 HOH A 36 536 117 HOH HOH . D 4 HOH A 37 537 107 HOH HOH . D 4 HOH A 38 538 82 HOH HOH . D 4 HOH A 39 539 17 HOH HOH . D 4 HOH A 40 540 27 HOH HOH . D 4 HOH A 41 541 2 HOH HOH . D 4 HOH A 42 542 11 HOH HOH . D 4 HOH A 43 543 20 HOH HOH . D 4 HOH A 44 544 1 HOH HOH . D 4 HOH A 45 545 133 HOH HOH . D 4 HOH A 46 546 99 HOH HOH . D 4 HOH A 47 547 42 HOH HOH . D 4 HOH A 48 548 97 HOH HOH . D 4 HOH A 49 549 141 HOH HOH . D 4 HOH A 50 550 155 HOH HOH . D 4 HOH A 51 551 18 HOH HOH . D 4 HOH A 52 552 78 HOH HOH . D 4 HOH A 53 553 87 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 174 HOH HOH . D 4 HOH A 56 556 79 HOH HOH . D 4 HOH A 57 557 29 HOH HOH . D 4 HOH A 58 558 119 HOH HOH . D 4 HOH A 59 559 70 HOH HOH . D 4 HOH A 60 560 5 HOH HOH . D 4 HOH A 61 561 76 HOH HOH . D 4 HOH A 62 562 32 HOH HOH . D 4 HOH A 63 563 58 HOH HOH . D 4 HOH A 64 564 81 HOH HOH . D 4 HOH A 65 565 83 HOH HOH . D 4 HOH A 66 566 126 HOH HOH . D 4 HOH A 67 567 88 HOH HOH . D 4 HOH A 68 568 91 HOH HOH . D 4 HOH A 69 569 35 HOH HOH . D 4 HOH A 70 570 125 HOH HOH . D 4 HOH A 71 571 75 HOH HOH . D 4 HOH A 72 572 101 HOH HOH . D 4 HOH A 73 573 108 HOH HOH . D 4 HOH A 74 574 19 HOH HOH . D 4 HOH A 75 575 140 HOH HOH . D 4 HOH A 76 576 30 HOH HOH . D 4 HOH A 77 577 24 HOH HOH . D 4 HOH A 78 578 10 HOH HOH . D 4 HOH A 79 579 100 HOH HOH . D 4 HOH A 80 580 22 HOH HOH . D 4 HOH A 81 581 66 HOH HOH . D 4 HOH A 82 582 40 HOH HOH . D 4 HOH A 83 583 49 HOH HOH . D 4 HOH A 84 584 62 HOH HOH . D 4 HOH A 85 585 13 HOH HOH . D 4 HOH A 86 586 6 HOH HOH . D 4 HOH A 87 587 55 HOH HOH . D 4 HOH A 88 588 104 HOH HOH . D 4 HOH A 89 589 163 HOH HOH . D 4 HOH A 90 590 90 HOH HOH . D 4 HOH A 91 591 96 HOH HOH . D 4 HOH A 92 592 123 HOH HOH . D 4 HOH A 93 593 167 HOH HOH . D 4 HOH A 94 594 28 HOH HOH . D 4 HOH A 95 595 50 HOH HOH . D 4 HOH A 96 596 41 HOH HOH . D 4 HOH A 97 597 60 HOH HOH . D 4 HOH A 98 598 8 HOH HOH . D 4 HOH A 99 599 181 HOH HOH . D 4 HOH A 100 600 69 HOH HOH . D 4 HOH A 101 601 129 HOH HOH . D 4 HOH A 102 602 85 HOH HOH . D 4 HOH A 103 603 7 HOH HOH . D 4 HOH A 104 604 51 HOH HOH . D 4 HOH A 105 605 98 HOH HOH . D 4 HOH A 106 606 186 HOH HOH . D 4 HOH A 107 607 113 HOH HOH . D 4 HOH A 108 608 166 HOH HOH . D 4 HOH A 109 609 152 HOH HOH . D 4 HOH A 110 610 45 HOH HOH . D 4 HOH A 111 611 56 HOH HOH . D 4 HOH A 112 612 72 HOH HOH . D 4 HOH A 113 613 92 HOH HOH . D 4 HOH A 114 614 84 HOH HOH . D 4 HOH A 115 615 173 HOH HOH . D 4 HOH A 116 616 172 HOH HOH . D 4 HOH A 117 617 68 HOH HOH . D 4 HOH A 118 618 14 HOH HOH . D 4 HOH A 119 619 168 HOH HOH . D 4 HOH A 120 620 80 HOH HOH . D 4 HOH A 121 621 57 HOH HOH . D 4 HOH A 122 622 9 HOH HOH . D 4 HOH A 123 623 112 HOH HOH . D 4 HOH A 124 624 120 HOH HOH . D 4 HOH A 125 625 135 HOH HOH . D 4 HOH A 126 626 114 HOH HOH . D 4 HOH A 127 627 109 HOH HOH . D 4 HOH A 128 628 143 HOH HOH . D 4 HOH A 129 629 147 HOH HOH . D 4 HOH A 130 630 111 HOH HOH . D 4 HOH A 131 631 153 HOH HOH . D 4 HOH A 132 632 171 HOH HOH . D 4 HOH A 133 633 65 HOH HOH . D 4 HOH A 134 634 16 HOH HOH . D 4 HOH A 135 635 34 HOH HOH . D 4 HOH A 136 636 86 HOH HOH . D 4 HOH A 137 637 121 HOH HOH . D 4 HOH A 138 638 184 HOH HOH . D 4 HOH A 139 639 131 HOH HOH . D 4 HOH A 140 640 151 HOH HOH . D 4 HOH A 141 641 47 HOH HOH . D 4 HOH A 142 642 31 HOH HOH . D 4 HOH A 143 643 134 HOH HOH . D 4 HOH A 144 644 144 HOH HOH . D 4 HOH A 145 645 177 HOH HOH . D 4 HOH A 146 646 130 HOH HOH . D 4 HOH A 147 647 189 HOH HOH . D 4 HOH A 148 648 110 HOH HOH . D 4 HOH A 149 649 160 HOH HOH . D 4 HOH A 150 650 67 HOH HOH . D 4 HOH A 151 651 102 HOH HOH . D 4 HOH A 152 652 149 HOH HOH . D 4 HOH A 153 653 191 HOH HOH . D 4 HOH A 154 654 187 HOH HOH . E 4 HOH B 1 101 176 HOH HOH . E 4 HOH B 2 102 180 HOH HOH . E 4 HOH B 3 103 159 HOH HOH . E 4 HOH B 4 104 145 HOH HOH . E 4 HOH B 5 105 25 HOH HOH . E 4 HOH B 6 106 115 HOH HOH . E 4 HOH B 7 107 178 HOH HOH . E 4 HOH B 8 108 105 HOH HOH . E 4 HOH B 9 109 74 HOH HOH . E 4 HOH B 10 110 71 HOH HOH . E 4 HOH B 11 111 21 HOH HOH . E 4 HOH B 12 112 15 HOH HOH . E 4 HOH B 13 113 3 HOH HOH . E 4 HOH B 14 114 52 HOH HOH . E 4 HOH B 15 115 44 HOH HOH . E 4 HOH B 16 116 33 HOH HOH . E 4 HOH B 17 117 12 HOH HOH . E 4 HOH B 18 118 95 HOH HOH . E 4 HOH B 19 119 154 HOH HOH . E 4 HOH B 20 120 124 HOH HOH . E 4 HOH B 21 121 103 HOH HOH . E 4 HOH B 22 122 190 HOH HOH . E 4 HOH B 23 123 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -13.839 -8.067 2.997 1 24.09 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 -14.179 -8.919 1.937 1 23.53 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 -13.633 -6.62 2.588 1 35.21 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 -13.21 -6.469 1.247 1 23.45 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 -12.797 -5.874 3.643 1 23.88 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 -11.75 -5.067 3.138 1 24.55 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . C 3 -12.924 -8.435 3.463 1 28.91 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . C 3 -14.625 -8.111 3.75 1 28.91 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . C 3 -14.231 -9.842 2.263 1 28.23 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . C 3 -14.623 -6.168 2.643 1 42.25 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . C 3 -13.231 -5.519 1.003 1 28.13 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . C 3 -12.37 -6.607 4.327 1 28.66 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . C 3 -13.466 -5.244 4.23 1 28.66 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . C 3 -12.126 -4.252 2.744 1 29.46 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #