data_5EVJ # _model_server_result.job_id P05IQQRo7g_mJ9sqJxqsmw _model_server_result.datetime_utc '2025-04-02 05:58:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5evj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5EVJ # _exptl.entry_id 5EVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EVJ _cell.length_a 157.885 _cell.length_b 157.885 _cell.length_c 95.452 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 74 1_555 A SG CYS 170 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 B SG CYS 74 B CYS 74 1_555 B SG CYS 170 B CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 C NA NA . A NA 401 1_555 D O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc2 C NA NA . A NA 401 1_555 D O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EVJ _atom_sites.fract_transf_matrix[1][1] 0.006334 _atom_sites.fract_transf_matrix[1][2] 0.003657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 3 HOH A 1 501 319 HOH HOH . D 3 HOH A 2 502 335 HOH HOH . D 3 HOH A 3 503 267 HOH HOH . D 3 HOH A 4 504 28 HOH HOH . D 3 HOH A 5 505 329 HOH HOH . D 3 HOH A 6 506 252 HOH HOH . D 3 HOH A 7 507 77 HOH HOH . D 3 HOH A 8 508 34 HOH HOH . D 3 HOH A 9 509 37 HOH HOH . D 3 HOH A 10 510 234 HOH HOH . D 3 HOH A 11 511 324 HOH HOH . D 3 HOH A 12 512 6 HOH HOH . D 3 HOH A 13 513 222 HOH HOH . D 3 HOH A 14 514 108 HOH HOH . D 3 HOH A 15 515 251 HOH HOH . D 3 HOH A 16 516 68 HOH HOH . D 3 HOH A 17 517 44 HOH HOH . D 3 HOH A 18 518 73 HOH HOH . D 3 HOH A 19 519 120 HOH HOH . D 3 HOH A 20 520 105 HOH HOH . D 3 HOH A 21 521 32 HOH HOH . D 3 HOH A 22 522 54 HOH HOH . D 3 HOH A 23 523 72 HOH HOH . D 3 HOH A 24 524 66 HOH HOH . D 3 HOH A 25 525 12 HOH HOH . D 3 HOH A 26 526 22 HOH HOH . D 3 HOH A 27 527 170 HOH HOH . D 3 HOH A 28 528 125 HOH HOH . D 3 HOH A 29 529 76 HOH HOH . D 3 HOH A 30 530 10 HOH HOH . D 3 HOH A 31 531 30 HOH HOH . D 3 HOH A 32 532 176 HOH HOH . D 3 HOH A 33 533 181 HOH HOH . D 3 HOH A 34 534 43 HOH HOH . D 3 HOH A 35 535 70 HOH HOH . D 3 HOH A 36 536 42 HOH HOH . D 3 HOH A 37 537 115 HOH HOH . D 3 HOH A 38 538 254 HOH HOH . D 3 HOH A 39 539 233 HOH HOH . D 3 HOH A 40 540 137 HOH HOH . D 3 HOH A 41 541 156 HOH HOH . D 3 HOH A 42 542 203 HOH HOH . D 3 HOH A 43 543 86 HOH HOH . D 3 HOH A 44 544 74 HOH HOH . D 3 HOH A 45 545 103 HOH HOH . D 3 HOH A 46 546 27 HOH HOH . D 3 HOH A 47 547 178 HOH HOH . D 3 HOH A 48 548 35 HOH HOH . D 3 HOH A 49 549 38 HOH HOH . D 3 HOH A 50 550 24 HOH HOH . D 3 HOH A 51 551 325 HOH HOH . D 3 HOH A 52 552 341 HOH HOH . D 3 HOH A 53 553 53 HOH HOH . D 3 HOH A 54 554 182 HOH HOH . D 3 HOH A 55 555 113 HOH HOH . D 3 HOH A 56 556 106 HOH HOH . D 3 HOH A 57 557 295 HOH HOH . D 3 HOH A 58 558 195 HOH HOH . D 3 HOH A 59 559 142 HOH HOH . D 3 HOH A 60 560 67 HOH HOH . D 3 HOH A 61 561 256 HOH HOH . D 3 HOH A 62 562 75 HOH HOH . D 3 HOH A 63 563 265 HOH HOH . D 3 HOH A 64 564 7 HOH HOH . D 3 HOH A 65 565 63 HOH HOH . D 3 HOH A 66 566 23 HOH HOH . D 3 HOH A 67 567 134 HOH HOH . D 3 HOH A 68 568 221 HOH HOH . D 3 HOH A 69 569 19 HOH HOH . D 3 HOH A 70 570 61 HOH HOH . D 3 HOH A 71 571 202 HOH HOH . D 3 HOH A 72 572 57 HOH HOH . D 3 HOH A 73 573 112 HOH HOH . D 3 HOH A 74 574 138 HOH HOH . D 3 HOH A 75 575 159 HOH HOH . D 3 HOH A 76 576 16 HOH HOH . D 3 HOH A 77 577 145 HOH HOH . D 3 HOH A 78 578 130 HOH HOH . D 3 HOH A 79 579 26 HOH HOH . D 3 HOH A 80 580 240 HOH HOH . D 3 HOH A 81 581 11 HOH HOH . D 3 HOH A 82 582 253 HOH HOH . D 3 HOH A 83 583 219 HOH HOH . D 3 HOH A 84 584 83 HOH HOH . D 3 HOH A 85 585 40 HOH HOH . D 3 HOH A 86 586 64 HOH HOH . D 3 HOH A 87 587 321 HOH HOH . D 3 HOH A 88 588 81 HOH HOH . D 3 HOH A 89 589 119 HOH HOH . D 3 HOH A 90 590 144 HOH HOH . D 3 HOH A 91 591 69 HOH HOH . D 3 HOH A 92 592 122 HOH HOH . D 3 HOH A 93 593 227 HOH HOH . D 3 HOH A 94 594 45 HOH HOH . D 3 HOH A 95 595 14 HOH HOH . D 3 HOH A 96 596 208 HOH HOH . D 3 HOH A 97 597 9 HOH HOH . D 3 HOH A 98 598 288 HOH HOH . D 3 HOH A 99 599 224 HOH HOH . D 3 HOH A 100 600 237 HOH HOH . D 3 HOH A 101 601 209 HOH HOH . D 3 HOH A 102 602 197 HOH HOH . D 3 HOH A 103 603 331 HOH HOH . D 3 HOH A 104 604 255 HOH HOH . D 3 HOH A 105 605 151 HOH HOH . D 3 HOH A 106 606 332 HOH HOH . D 3 HOH A 107 607 21 HOH HOH . D 3 HOH A 108 608 49 HOH HOH . D 3 HOH A 109 609 317 HOH HOH . D 3 HOH A 110 610 104 HOH HOH . D 3 HOH A 111 611 340 HOH HOH . D 3 HOH A 112 612 1 HOH HOH . D 3 HOH A 113 613 228 HOH HOH . D 3 HOH A 114 614 117 HOH HOH . D 3 HOH A 115 615 118 HOH HOH . D 3 HOH A 116 616 3 HOH HOH . D 3 HOH A 117 617 55 HOH HOH . D 3 HOH A 118 618 294 HOH HOH . D 3 HOH A 119 619 126 HOH HOH . D 3 HOH A 120 620 323 HOH HOH . D 3 HOH A 121 621 328 HOH HOH . D 3 HOH A 122 622 194 HOH HOH . D 3 HOH A 123 623 162 HOH HOH . D 3 HOH A 124 624 166 HOH HOH . D 3 HOH A 125 625 191 HOH HOH . D 3 HOH A 126 626 246 HOH HOH . D 3 HOH A 127 627 223 HOH HOH . D 3 HOH A 128 628 80 HOH HOH . D 3 HOH A 129 629 243 HOH HOH . D 3 HOH A 130 630 257 HOH HOH . D 3 HOH A 131 631 303 HOH HOH . D 3 HOH A 132 632 94 HOH HOH . D 3 HOH A 133 633 161 HOH HOH . D 3 HOH A 134 634 5 HOH HOH . D 3 HOH A 135 635 268 HOH HOH . D 3 HOH A 136 636 320 HOH HOH . D 3 HOH A 137 637 289 HOH HOH . D 3 HOH A 138 638 284 HOH HOH . D 3 HOH A 139 639 175 HOH HOH . D 3 HOH A 140 640 148 HOH HOH . D 3 HOH A 141 641 180 HOH HOH . D 3 HOH A 142 642 139 HOH HOH . D 3 HOH A 143 643 65 HOH HOH . D 3 HOH A 144 644 192 HOH HOH . D 3 HOH A 145 645 165 HOH HOH . D 3 HOH A 146 646 214 HOH HOH . D 3 HOH A 147 647 235 HOH HOH . D 3 HOH A 148 648 88 HOH HOH . D 3 HOH A 149 649 339 HOH HOH . D 3 HOH A 150 650 101 HOH HOH . D 3 HOH A 151 651 316 HOH HOH . D 3 HOH A 152 652 311 HOH HOH . D 3 HOH A 153 653 217 HOH HOH . D 3 HOH A 154 654 200 HOH HOH . D 3 HOH A 155 655 305 HOH HOH . E 3 HOH B 1 401 204 HOH HOH . E 3 HOH B 2 402 164 HOH HOH . E 3 HOH B 3 403 336 HOH HOH . E 3 HOH B 4 404 82 HOH HOH . E 3 HOH B 5 405 87 HOH HOH . E 3 HOH B 6 406 56 HOH HOH . E 3 HOH B 7 407 59 HOH HOH . E 3 HOH B 8 408 205 HOH HOH . E 3 HOH B 9 409 17 HOH HOH . E 3 HOH B 10 410 33 HOH HOH . E 3 HOH B 11 411 189 HOH HOH . E 3 HOH B 12 412 95 HOH HOH . E 3 HOH B 13 413 92 HOH HOH . E 3 HOH B 14 414 52 HOH HOH . E 3 HOH B 15 415 129 HOH HOH . E 3 HOH B 16 416 60 HOH HOH . E 3 HOH B 17 417 20 HOH HOH . E 3 HOH B 18 418 48 HOH HOH . E 3 HOH B 19 419 47 HOH HOH . E 3 HOH B 20 420 79 HOH HOH . E 3 HOH B 21 421 333 HOH HOH . E 3 HOH B 22 422 174 HOH HOH . E 3 HOH B 23 423 123 HOH HOH . E 3 HOH B 24 424 50 HOH HOH . E 3 HOH B 25 425 154 HOH HOH . E 3 HOH B 26 426 114 HOH HOH . E 3 HOH B 27 427 78 HOH HOH . E 3 HOH B 28 428 259 HOH HOH . E 3 HOH B 29 429 160 HOH HOH . E 3 HOH B 30 430 121 HOH HOH . E 3 HOH B 31 431 90 HOH HOH . E 3 HOH B 32 432 147 HOH HOH . E 3 HOH B 33 433 248 HOH HOH . E 3 HOH B 34 434 179 HOH HOH . E 3 HOH B 35 435 278 HOH HOH . E 3 HOH B 36 436 326 HOH HOH . E 3 HOH B 37 437 18 HOH HOH . E 3 HOH B 38 438 337 HOH HOH . E 3 HOH B 39 439 330 HOH HOH . E 3 HOH B 40 440 93 HOH HOH . E 3 HOH B 41 441 128 HOH HOH . E 3 HOH B 42 442 283 HOH HOH . E 3 HOH B 43 443 96 HOH HOH . E 3 HOH B 44 444 98 HOH HOH . E 3 HOH B 45 445 58 HOH HOH . E 3 HOH B 46 446 177 HOH HOH . E 3 HOH B 47 447 158 HOH HOH . E 3 HOH B 48 448 163 HOH HOH . E 3 HOH B 49 449 31 HOH HOH . E 3 HOH B 50 450 282 HOH HOH . E 3 HOH B 51 451 100 HOH HOH . E 3 HOH B 52 452 171 HOH HOH . E 3 HOH B 53 453 8 HOH HOH . E 3 HOH B 54 454 183 HOH HOH . E 3 HOH B 55 455 199 HOH HOH . E 3 HOH B 56 456 41 HOH HOH . E 3 HOH B 57 457 277 HOH HOH . E 3 HOH B 58 458 29 HOH HOH . E 3 HOH B 59 459 110 HOH HOH . E 3 HOH B 60 460 327 HOH HOH . E 3 HOH B 61 461 298 HOH HOH . E 3 HOH B 62 462 150 HOH HOH . E 3 HOH B 63 463 193 HOH HOH . E 3 HOH B 64 464 39 HOH HOH . E 3 HOH B 65 465 131 HOH HOH . E 3 HOH B 66 466 2 HOH HOH . E 3 HOH B 67 467 212 HOH HOH . E 3 HOH B 68 468 230 HOH HOH . E 3 HOH B 69 469 266 HOH HOH . E 3 HOH B 70 470 149 HOH HOH . E 3 HOH B 71 471 250 HOH HOH . E 3 HOH B 72 472 109 HOH HOH . E 3 HOH B 73 473 84 HOH HOH . E 3 HOH B 74 474 4 HOH HOH . E 3 HOH B 75 475 135 HOH HOH . E 3 HOH B 76 476 13 HOH HOH . E 3 HOH B 77 477 99 HOH HOH . E 3 HOH B 78 478 136 HOH HOH . E 3 HOH B 79 479 71 HOH HOH . E 3 HOH B 80 480 201 HOH HOH . E 3 HOH B 81 481 318 HOH HOH . E 3 HOH B 82 482 342 HOH HOH . E 3 HOH B 83 483 315 HOH HOH . E 3 HOH B 84 484 322 HOH HOH . E 3 HOH B 85 485 172 HOH HOH . E 3 HOH B 86 486 198 HOH HOH . E 3 HOH B 87 487 338 HOH HOH . E 3 HOH B 88 488 213 HOH HOH . E 3 HOH B 89 489 207 HOH HOH . E 3 HOH B 90 490 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 61.165 _atom_site.Cartn_y -29.79 _atom_site.Cartn_z 2.463 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #