data_5EW9 # _model_server_result.job_id EJRnFchAfKDKOJ3V9zYwLw _model_server_result.datetime_utc '2024-12-26 23:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ew9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 5EW9 # _exptl.entry_id 5EW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.937 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(3-chloranyl-2-fluoranyl-phenoxy)-1-[[6-(1,3-thiazol-2-ylamino)pyridin-2-yl]methyl]cyclohexane-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EW9 _cell.length_a 51.851 _cell.length_b 65.327 _cell.length_c 77.267 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 167 A ARG 286 1_555 A N TPO 168 A TPO 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C TPO 168 A TPO 287 1_555 A N TPO 169 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C TPO 169 A TPO 288 1_555 A N LEU 170 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C22 H21 Cl F N3 O3 S' _chem_comp.formula_weight 461.937 _chem_comp.id 5VC _chem_comp.mon_nstd_flag . _chem_comp.name '4-(3-chloranyl-2-fluoranyl-phenoxy)-1-[[6-(1,3-thiazol-2-ylamino)pyridin-2-yl]methyl]cyclohexane-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MK-5108 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 5VC doub 1 n y C27 C26 5VC sing 2 n y CL3 C26 5VC sing 3 n n C28 C29 5VC sing 4 n y C26 C25 5VC doub 5 n y C21 N22 5VC sing 6 n y C21 C20 5VC doub 7 n y C29 C24 5VC doub 8 n y C25 C24 5VC sing 9 n y C25 F30 5VC sing 10 n n N22 C18 5VC doub 11 n y C20 S19 5VC sing 12 n y C24 O23 5VC sing 13 n n C18 S19 5VC sing 14 n y C18 N17 5VC sing 15 n n N17 C13 5VC sing 16 n n O23 C4 5VC sing 17 n n C5 C4 5VC sing 18 n n C5 C6 5VC sing 19 n n C4 C3 5VC sing 20 n n C6 C1 5VC sing 21 n n C13 N12 5VC doub 22 n y C13 C14 5VC sing 23 n y N12 C11 5VC sing 24 n y C14 C15 5VC doub 25 n y O9 C7 5VC doub 26 n n C3 C2 5VC sing 27 n n C11 C10 5VC sing 28 n n C11 C16 5VC doub 29 n y C1 C2 5VC sing 30 n n C1 C10 5VC sing 31 n n C1 C7 5VC sing 32 n n C15 C16 5VC sing 33 n y C7 O8 5VC sing 34 n n C14 H1 5VC sing 35 n n C15 H2 5VC sing 36 n n C16 H3 5VC sing 37 n n C21 H4 5VC sing 38 n n C27 H5 5VC sing 39 n n C20 H6 5VC sing 40 n n N17 H7 5VC sing 41 n n C10 H8 5VC sing 42 n n C10 H9 5VC sing 43 n n O8 H10 5VC sing 44 n n C2 H11 5VC sing 45 n n C2 H12 5VC sing 46 n n C3 H13 5VC sing 47 n n C3 H14 5VC sing 48 n n C4 H15 5VC sing 49 n n C28 H16 5VC sing 50 n n C29 H17 5VC sing 51 n n C5 H18 5VC sing 52 n n C5 H19 5VC sing 53 n n C6 H20 5VC sing 54 n n C6 H21 5VC sing 55 n n # _atom_sites.entry_id 5EW9 _atom_sites.fract_transf_matrix[1][1] 0.019286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5VC A 1 1000 1000 5VC SMD . C 3 HOH A 1 1101 56 HOH HOH . C 3 HOH A 2 1102 59 HOH HOH . C 3 HOH A 3 1103 39 HOH HOH . C 3 HOH A 4 1104 15 HOH HOH . C 3 HOH A 5 1105 16 HOH HOH . C 3 HOH A 6 1106 7 HOH HOH . C 3 HOH A 7 1107 12 HOH HOH . C 3 HOH A 8 1108 34 HOH HOH . C 3 HOH A 9 1109 42 HOH HOH . C 3 HOH A 10 1110 71 HOH HOH . C 3 HOH A 11 1111 29 HOH HOH . C 3 HOH A 12 1112 1 HOH HOH . C 3 HOH A 13 1113 41 HOH HOH . C 3 HOH A 14 1114 62 HOH HOH . C 3 HOH A 15 1115 10 HOH HOH . C 3 HOH A 16 1116 74 HOH HOH . C 3 HOH A 17 1117 32 HOH HOH . C 3 HOH A 18 1118 4 HOH HOH . C 3 HOH A 19 1119 5 HOH HOH . C 3 HOH A 20 1120 23 HOH HOH . C 3 HOH A 21 1121 11 HOH HOH . C 3 HOH A 22 1122 17 HOH HOH . C 3 HOH A 23 1123 65 HOH HOH . C 3 HOH A 24 1124 2 HOH HOH . C 3 HOH A 25 1125 52 HOH HOH . C 3 HOH A 26 1126 3 HOH HOH . C 3 HOH A 27 1127 37 HOH HOH . C 3 HOH A 28 1128 6 HOH HOH . C 3 HOH A 29 1129 55 HOH HOH . C 3 HOH A 30 1130 72 HOH HOH . C 3 HOH A 31 1131 9 HOH HOH . C 3 HOH A 32 1132 18 HOH HOH . C 3 HOH A 33 1133 8 HOH HOH . C 3 HOH A 34 1134 24 HOH HOH . C 3 HOH A 35 1135 50 HOH HOH . C 3 HOH A 36 1136 13 HOH HOH . C 3 HOH A 37 1137 25 HOH HOH . C 3 HOH A 38 1138 31 HOH HOH . C 3 HOH A 39 1139 33 HOH HOH . C 3 HOH A 40 1140 14 HOH HOH . C 3 HOH A 41 1141 53 HOH HOH . C 3 HOH A 42 1142 48 HOH HOH . C 3 HOH A 43 1143 22 HOH HOH . C 3 HOH A 44 1144 30 HOH HOH . C 3 HOH A 45 1145 26 HOH HOH . C 3 HOH A 46 1146 45 HOH HOH . C 3 HOH A 47 1147 46 HOH HOH . C 3 HOH A 48 1148 40 HOH HOH . C 3 HOH A 49 1149 51 HOH HOH . C 3 HOH A 50 1150 27 HOH HOH . C 3 HOH A 51 1151 28 HOH HOH . C 3 HOH A 52 1152 68 HOH HOH . C 3 HOH A 53 1153 57 HOH HOH . C 3 HOH A 54 1154 73 HOH HOH . C 3 HOH A 55 1155 19 HOH HOH . C 3 HOH A 56 1156 60 HOH HOH . C 3 HOH A 57 1157 66 HOH HOH . C 3 HOH A 58 1158 47 HOH HOH . C 3 HOH A 59 1159 20 HOH HOH . C 3 HOH A 60 1160 35 HOH HOH . C 3 HOH A 61 1161 70 HOH HOH . C 3 HOH A 62 1162 58 HOH HOH . C 3 HOH A 63 1163 21 HOH HOH . C 3 HOH A 64 1164 38 HOH HOH . C 3 HOH A 65 1165 67 HOH HOH . C 3 HOH A 66 1166 49 HOH HOH . C 3 HOH A 67 1167 69 HOH HOH . C 3 HOH A 68 1168 44 HOH HOH . C 3 HOH A 69 1169 36 HOH HOH . C 3 HOH A 70 1170 64 HOH HOH . C 3 HOH A 71 1171 61 HOH HOH . C 3 HOH A 72 1172 54 HOH HOH . C 3 HOH A 73 1173 63 HOH HOH . C 3 HOH A 74 1174 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 5VC . . . B 2 -15.745 11.585 17.79 1 32.97 ? C13 5VC 1000 A 1 HETATM 2 C C14 5VC . . . B 2 -16.825 10.886 18.344 1 37.5 ? C14 5VC 1000 A 1 HETATM 3 C C15 5VC . . . B 2 -16.592 10.012 19.385 1 37.34 ? C15 5VC 1000 A 1 HETATM 4 C C16 5VC . . . B 2 -15.282 9.88 19.836 1 39.27 ? C16 5VC 1000 A 1 HETATM 5 C C11 5VC . . . B 2 -14.258 10.609 19.238 1 35.32 ? C11 5VC 1000 A 1 HETATM 6 C C21 5VC . . . B 2 -14.282 14.74 14.616 1 28.94 ? C21 5VC 1000 A 1 HETATM 7 C C27 5VC . . . B 2 -8.997 11.44 12.878 1 25.12 ? C27 5VC 1000 A 1 HETATM 8 O O23 5VC . . . B 2 -9.312 11.101 17.019 1 30.53 ? O23 5VC 1000 A 1 HETATM 9 C C24 5VC . . . B 2 -9.21 11.15 15.654 1 28.86 ? C24 5VC 1000 A 1 HETATM 10 C C25 5VC . . . B 2 -9.428 12.364 15.044 1 23.34 ? C25 5VC 1000 A 1 HETATM 11 C C26 5VC . . . B 2 -9.329 12.528 13.684 1 26.09 ? C26 5VC 1000 A 1 HETATM 12 C C18 5VC . . . B 2 -15.086 13.282 16.047 1 25.6 ? C18 5VC 1000 A 1 HETATM 13 N N22 5VC . . . B 2 -15.404 14.094 15.074 1 23.95 ? N22 5VC 1000 A 1 HETATM 14 S S19 5VC . . . B 2 -13.414 13.226 16.499 1 26.32 ? S19 5VC 1000 A 1 HETATM 15 C C20 5VC . . . B 2 -13.113 14.403 15.249 1 30.8 ? C20 5VC 1000 A 1 HETATM 16 N N17 5VC . . . B 2 -16.063 12.468 16.708 1 26.42 ? N17 5VC 1000 A 1 HETATM 17 C C10 5VC . . . B 2 -12.851 10.432 19.746 1 34.55 ? C10 5VC 1000 A 1 HETATM 18 C C1 5VC . . . B 2 -12.243 9.106 19.242 1 41.03 ? C1 5VC 1000 A 1 HETATM 19 C C7 5VC . . . B 2 -12.962 7.907 19.781 1 49.99 ? C7 5VC 1000 A 1 HETATM 20 O O8 5VC . . . B 2 -12.725 7.574 20.984 1 56.86 ? O8 5VC 1000 A 1 HETATM 21 O O9 5VC . . . B 2 -13.766 7.286 19.006 1 52.33 ? O9 5VC 1000 A 1 HETATM 22 C C2 5VC . . . B 2 -10.785 8.981 19.692 1 37.59 ? C2 5VC 1000 A 1 HETATM 23 C C3 5VC . . . B 2 -9.943 10.09 19.071 1 33.66 ? C3 5VC 1000 A 1 HETATM 24 C C4 5VC . . . B 2 -10.015 9.99 17.539 1 34.82 ? C4 5VC 1000 A 1 HETATM 25 F F30 5VC . . . B 2 -9.757 13.434 15.781 1 29.95 ? F30 5VC 1000 A 1 HETATM 26 CL CL3 5VC . . . B 2 -9.649 14.117 13.062 1 32.2 ? CL3 5VC 1000 A 1 HETATM 27 C C28 5VC . . . B 2 -8.781 10.205 13.506 1 24.09 ? C28 5VC 1000 A 1 HETATM 28 C C29 5VC . . . B 2 -8.877 10.031 14.891 1 26.31 ? C29 5VC 1000 A 1 HETATM 29 C C5 5VC . . . B 2 -11.476 10.156 17.107 1 35.45 ? C5 5VC 1000 A 1 HETATM 30 C C6 5VC . . . B 2 -12.326 9.045 17.716 1 32.28 ? C6 5VC 1000 A 1 HETATM 31 N N12 5VC . . . B 2 -14.491 11.45 18.225 1 31.59 ? N12 5VC 1000 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #