data_5EWK # _model_server_result.job_id LQjfDOovd9TyFPoIdj3Bgw _model_server_result.datetime_utc '2024-11-25 09:32:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ewk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5EWK # _exptl.entry_id 5EWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.336 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.38 _cell.angle_gamma 90 _cell.entry_id 5EWK _cell.length_a 87.47 _cell.length_b 61.18 _cell.length_c 38.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 42 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 176 A CYS 176 1_555 A SG CYS 190 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C17 H17 N3 O2' _chem_comp.formula_weight 295.336 _chem_comp.id P34 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA N P34 sing 237 n n CAA HAA1 P34 sing 238 n n CAA HAA2 P34 sing 239 n n CAA HAA3 P34 sing 240 n n N CAB P34 sing 241 n n N CA P34 sing 242 n n CAB HAB1 P34 sing 243 n n CAB HAB2 P34 sing 244 n n CAB HAB3 P34 sing 245 n n CA C P34 sing 246 n n CA HA1 P34 sing 247 n n CA HA2 P34 sing 248 n n C O P34 doub 249 n n C NAM P34 sing 250 n n NAM CAP P34 sing 251 n n NAM HAM P34 sing 252 n n CAP CAK P34 sing 253 n y CAP CAG P34 doub 254 n y CAK CAU P34 doub 255 n y CAK HAK P34 sing 256 n n CAU CAT P34 sing 257 n y CAU CAR P34 sing 258 n y CAT CAI P34 sing 259 n y CAT CAS P34 doub 260 n y CAI CAF P34 doub 261 n y CAI HAI P34 sing 262 n n CAF CAE P34 sing 263 n y CAF HAF P34 sing 264 n n CAE CAH P34 doub 265 n y CAE HAE P34 sing 266 n n CAH CAS P34 sing 267 n y CAH HAH P34 sing 268 n n CAS CAQ P34 sing 269 n y CAQ OAD P34 doub 270 n n CAQ NAN P34 sing 271 n y NAN CAR P34 sing 272 n y NAN HAN P34 sing 273 n n CAR CAJ P34 doub 274 n y CAJ CAG P34 sing 275 n y CAJ HAJ P34 sing 276 n n CAG HAG P34 sing 277 n n # _atom_sites.entry_id 5EWK _atom_sites.fract_transf_matrix[1][1] 0.011432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002094 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P34 A 1 301 1 P34 P34 . C 3 HOH A 1 401 130 HOH HOH . C 3 HOH A 2 402 119 HOH HOH . C 3 HOH A 3 403 134 HOH HOH . C 3 HOH A 4 404 120 HOH HOH . C 3 HOH A 5 405 72 HOH HOH . C 3 HOH A 6 406 59 HOH HOH . C 3 HOH A 7 407 54 HOH HOH . C 3 HOH A 8 408 89 HOH HOH . C 3 HOH A 9 409 112 HOH HOH . C 3 HOH A 10 410 42 HOH HOH . C 3 HOH A 11 411 16 HOH HOH . C 3 HOH A 12 412 108 HOH HOH . C 3 HOH A 13 413 28 HOH HOH . C 3 HOH A 14 414 2 HOH HOH . C 3 HOH A 15 415 67 HOH HOH . C 3 HOH A 16 416 18 HOH HOH . C 3 HOH A 17 417 115 HOH HOH . C 3 HOH A 18 418 41 HOH HOH . C 3 HOH A 19 419 26 HOH HOH . C 3 HOH A 20 420 30 HOH HOH . C 3 HOH A 21 421 83 HOH HOH . C 3 HOH A 22 422 99 HOH HOH . C 3 HOH A 23 423 64 HOH HOH . C 3 HOH A 24 424 15 HOH HOH . C 3 HOH A 25 425 48 HOH HOH . C 3 HOH A 26 426 61 HOH HOH . C 3 HOH A 27 427 121 HOH HOH . C 3 HOH A 28 428 88 HOH HOH . C 3 HOH A 29 429 51 HOH HOH . C 3 HOH A 30 430 25 HOH HOH . C 3 HOH A 31 431 44 HOH HOH . C 3 HOH A 32 432 43 HOH HOH . C 3 HOH A 33 433 39 HOH HOH . C 3 HOH A 34 434 17 HOH HOH . C 3 HOH A 35 435 22 HOH HOH . C 3 HOH A 36 436 77 HOH HOH . C 3 HOH A 37 437 6 HOH HOH . C 3 HOH A 38 438 57 HOH HOH . C 3 HOH A 39 439 135 HOH HOH . C 3 HOH A 40 440 9 HOH HOH . C 3 HOH A 41 441 95 HOH HOH . C 3 HOH A 42 442 29 HOH HOH . C 3 HOH A 43 443 38 HOH HOH . C 3 HOH A 44 444 49 HOH HOH . C 3 HOH A 45 445 11 HOH HOH . C 3 HOH A 46 446 129 HOH HOH . C 3 HOH A 47 447 1 HOH HOH . C 3 HOH A 48 448 97 HOH HOH . C 3 HOH A 49 449 65 HOH HOH . C 3 HOH A 50 450 5 HOH HOH . C 3 HOH A 51 451 81 HOH HOH . C 3 HOH A 52 452 73 HOH HOH . C 3 HOH A 53 453 50 HOH HOH . C 3 HOH A 54 454 92 HOH HOH . C 3 HOH A 55 455 55 HOH HOH . C 3 HOH A 56 456 58 HOH HOH . C 3 HOH A 57 457 36 HOH HOH . C 3 HOH A 58 458 3 HOH HOH . C 3 HOH A 59 459 69 HOH HOH . C 3 HOH A 60 460 33 HOH HOH . C 3 HOH A 61 461 13 HOH HOH . C 3 HOH A 62 462 66 HOH HOH . C 3 HOH A 63 463 10 HOH HOH . C 3 HOH A 64 464 23 HOH HOH . C 3 HOH A 65 465 8 HOH HOH . C 3 HOH A 66 466 7 HOH HOH . C 3 HOH A 67 467 139 HOH HOH . C 3 HOH A 68 468 131 HOH HOH . C 3 HOH A 69 469 14 HOH HOH . C 3 HOH A 70 470 71 HOH HOH . C 3 HOH A 71 471 128 HOH HOH . C 3 HOH A 72 472 31 HOH HOH . C 3 HOH A 73 473 132 HOH HOH . C 3 HOH A 74 474 32 HOH HOH . C 3 HOH A 75 475 56 HOH HOH . C 3 HOH A 76 476 27 HOH HOH . C 3 HOH A 77 477 103 HOH HOH . C 3 HOH A 78 478 45 HOH HOH . C 3 HOH A 79 479 4 HOH HOH . C 3 HOH A 80 480 86 HOH HOH . C 3 HOH A 81 481 46 HOH HOH . C 3 HOH A 82 482 37 HOH HOH . C 3 HOH A 83 483 35 HOH HOH . C 3 HOH A 84 484 96 HOH HOH . C 3 HOH A 85 485 94 HOH HOH . C 3 HOH A 86 486 52 HOH HOH . C 3 HOH A 87 487 82 HOH HOH . C 3 HOH A 88 488 40 HOH HOH . C 3 HOH A 89 489 24 HOH HOH . C 3 HOH A 90 490 101 HOH HOH . C 3 HOH A 91 491 12 HOH HOH . C 3 HOH A 92 492 80 HOH HOH . C 3 HOH A 93 493 104 HOH HOH . C 3 HOH A 94 494 113 HOH HOH . C 3 HOH A 95 495 34 HOH HOH . C 3 HOH A 96 496 62 HOH HOH . C 3 HOH A 97 497 75 HOH HOH . C 3 HOH A 98 498 60 HOH HOH . C 3 HOH A 99 499 79 HOH HOH . C 3 HOH A 100 500 122 HOH HOH . C 3 HOH A 101 501 47 HOH HOH . C 3 HOH A 102 502 20 HOH HOH . C 3 HOH A 103 503 76 HOH HOH . C 3 HOH A 104 504 21 HOH HOH . C 3 HOH A 105 505 91 HOH HOH . C 3 HOH A 106 506 141 HOH HOH . C 3 HOH A 107 507 68 HOH HOH . C 3 HOH A 108 508 70 HOH HOH . C 3 HOH A 109 509 116 HOH HOH . C 3 HOH A 110 510 87 HOH HOH . C 3 HOH A 111 511 143 HOH HOH . C 3 HOH A 112 512 109 HOH HOH . C 3 HOH A 113 513 85 HOH HOH . C 3 HOH A 114 514 102 HOH HOH . C 3 HOH A 115 515 133 HOH HOH . C 3 HOH A 116 516 74 HOH HOH . C 3 HOH A 117 517 53 HOH HOH . C 3 HOH A 118 518 84 HOH HOH . C 3 HOH A 119 519 127 HOH HOH . C 3 HOH A 120 520 111 HOH HOH . C 3 HOH A 121 521 123 HOH HOH . C 3 HOH A 122 522 19 HOH HOH . C 3 HOH A 123 523 110 HOH HOH . C 3 HOH A 124 524 118 HOH HOH . C 3 HOH A 125 525 136 HOH HOH . C 3 HOH A 126 526 126 HOH HOH . C 3 HOH A 127 527 63 HOH HOH . C 3 HOH A 128 528 114 HOH HOH . C 3 HOH A 129 529 100 HOH HOH . C 3 HOH A 130 530 140 HOH HOH . C 3 HOH A 131 531 117 HOH HOH . C 3 HOH A 132 532 93 HOH HOH . C 3 HOH A 133 533 90 HOH HOH . C 3 HOH A 134 534 105 HOH HOH . C 3 HOH A 135 535 137 HOH HOH . C 3 HOH A 136 536 107 HOH HOH . C 3 HOH A 137 537 138 HOH HOH . C 3 HOH A 138 538 98 HOH HOH . C 3 HOH A 139 539 106 HOH HOH . C 3 HOH A 140 540 124 HOH HOH . C 3 HOH A 141 541 78 HOH HOH . C 3 HOH A 142 542 125 HOH HOH . C 3 HOH A 143 543 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA P34 . . . B 2 19.499 30.887 17.558 1 68.87 ? CAA P34 301 A 1 HETATM 2 N N P34 . . . B 2 19.09 30.914 18.958 1 80.78 ? N P34 301 A 1 HETATM 3 C CAB P34 . . . B 2 19.169 29.576 19.475 1 82.3 ? CAB P34 301 A 1 HETATM 4 C CA P34 . . . B 2 19.982 31.759 19.719 1 76.02 ? CA P34 301 A 1 HETATM 5 C C P34 . . . B 2 19.494 32.565 20.944 1 73.41 ? C P34 301 A 1 HETATM 6 O O P34 . . . B 2 18.285 32.756 21.127 1 80.65 ? O P34 301 A 1 HETATM 7 N NAM P34 . . . B 2 20.458 33.095 21.769 1 57.16 ? NAM P34 301 A 1 HETATM 8 C CAP P34 . . . B 2 21.846 32.87 21.576 1 36.76 ? CAP P34 301 A 1 HETATM 9 C CAK P34 . . . B 2 22.734 33.931 21.376 1 26.2 ? CAK P34 301 A 1 HETATM 10 C CAU P34 . . . B 2 24.105 33.625 21.166 1 20.28 ? CAU P34 301 A 1 HETATM 11 C CAT P34 . . . B 2 25.152 34.636 20.956 1 21.95 ? CAT P34 301 A 1 HETATM 12 C CAI P34 . . . B 2 24.869 36 20.919 1 24.35 ? CAI P34 301 A 1 HETATM 13 C CAF P34 . . . B 2 25.884 36.912 20.722 1 22.45 ? CAF P34 301 A 1 HETATM 14 C CAE P34 . . . B 2 27.203 36.496 20.498 1 21.91 ? CAE P34 301 A 1 HETATM 15 C CAH P34 . . . B 2 27.493 35.128 20.521 1 20.94 ? CAH P34 301 A 1 HETATM 16 C CAS P34 . . . B 2 26.477 34.212 20.736 1 19.59 ? CAS P34 301 A 1 HETATM 17 C CAQ P34 . . . B 2 26.855 32.797 20.795 1 19.1 ? CAQ P34 301 A 1 HETATM 18 O OAD P34 . . . B 2 28.008 32.39 20.619 1 19.62 ? OAD P34 301 A 1 HETATM 19 N NAN P34 . . . B 2 25.859 31.906 20.993 1 20 ? NAN P34 301 A 1 HETATM 20 C CAR P34 . . . B 2 24.503 32.292 21.192 1 23.31 ? CAR P34 301 A 1 HETATM 21 C CAJ P34 . . . B 2 23.594 31.249 21.389 1 28.69 ? CAJ P34 301 A 1 HETATM 22 C CAG P34 . . . B 2 22.288 31.567 21.605 1 32.6 ? CAG P34 301 A 1 HETATM 23 H HAA1 P34 . . . B 2 18.964 30.209 17.069 1 82.65 ? HAA1 P34 301 A 1 HETATM 24 H HAA2 P34 . . . B 2 19.346 31.807 17.142 1 82.65 ? HAA2 P34 301 A 1 HETATM 25 H HAA3 P34 . . . B 2 20.48 30.648 17.499 1 82.65 ? HAA3 P34 301 A 1 HETATM 26 H HAB1 P34 . . . B 2 18.433 28.937 18.962 1 98.76 ? HAB1 P34 301 A 1 HETATM 27 H HAB2 P34 . . . B 2 18.975 29.586 20.452 1 98.76 ? HAB2 P34 301 A 1 HETATM 28 H HAB3 P34 . . . B 2 20.032 29.236 19.331 1 98.76 ? HAB3 P34 301 A 1 HETATM 29 H HA1 P34 . . . B 2 20.728 31.178 20.037 1 91.22 ? HA1 P34 301 A 1 HETATM 30 H HA2 P34 . . . B 2 20.368 32.411 19.085 1 91.22 ? HA2 P34 301 A 1 HETATM 31 H HAM P34 . . . B 2 20.196 33.563 22.492 1 68.6 ? HAM P34 301 A 1 HETATM 32 H HAK P34 . . . B 2 22.432 34.819 21.371 1 31.44 ? HAK P34 301 A 1 HETATM 33 H HAI P34 . . . B 2 23.946 36.312 21.041 1 29.23 ? HAI P34 301 A 1 HETATM 34 H HAF P34 . . . B 2 25.675 37.835 20.675 1 26.94 ? HAF P34 301 A 1 HETATM 35 H HAE P34 . . . B 2 27.93 37.169 20.352 1 26.3 ? HAE P34 301 A 1 HETATM 36 H HAH P34 . . . B 2 28.464 34.802 20.405 1 25.13 ? HAH P34 301 A 1 HETATM 37 H HAN P34 . . . B 2 26.078 30.969 21.011 1 24 ? HAN P34 301 A 1 HETATM 38 H HAJ P34 . . . B 2 23.921 30.223 21.401 1 34.43 ? HAJ P34 301 A 1 HETATM 39 H HAG P34 . . . B 2 21.613 30.815 21.737 1 39.12 ? HAG P34 301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 39 #