data_5EX3
#
_model_server_result.job_id            CH7UrwcE3Rp4CZwtLJTiLQ 
_model_server_result.datetime_utc      '2024-12-01 09:40:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ex3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5EX3 
#
_exptl.entry_id    5EX3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EX3 
_cell.length_a            53.378 
_cell.length_b            104.659 
_cell.length_c            117.599 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EX3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 57 A CYS 49 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc2 A SG CYS 60 A CYS 52 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc3 A SG CYS 70 A CYS 62 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc4 A SG CYS 73 A CYS 65 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc5 A SG CYS 79 A CYS 71 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc6 A SG CYS 83 A CYS 75 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc7 A NE2 HIS 91 A HIS 83 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc8 A SG CYS 95 A CYS 87 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc9 A SG CYS 216 A CYS 208 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc10 A SG CYS 269 A CYS 261 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc11 A SG CYS 271 A CYS 263 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc12 A SG CYS 274 A CYS 266 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
covale ? covale1 B C GLY 4 D GLY 830 1_555 B N MLY 5 D MLY 831 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C MLY 5 D MLY 831 1_555 B N SER 6 D SER 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5EX3 
_atom_sites.fract_transf_matrix[1][1]    0.018734 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008503 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 501 1 ZN ZN . 
D 3 ZN A 1 502 2 ZN ZN . 
E 3 ZN A 1 503 3 ZN ZN . 
F 4 SAH A 1 504 1 SAH SAH . 
G 5 ACY A 1 505 1 ACY ACT . 
H 5 ACY A 1 506 2 ACY ACT . 
I 5 ACY A 1 507 3 ACY ACT . 
J 5 ACY A 1 508 4 ACY ACT . 
K 6 HOH A 1 601 61 HOH HOH . 
K 6 HOH A 2 602 7 HOH HOH . 
K 6 HOH A 3 603 3 HOH HOH . 
K 6 HOH A 4 604 98 HOH HOH . 
K 6 HOH A 5 605 83 HOH HOH . 
K 6 HOH A 6 606 2 HOH HOH . 
K 6 HOH A 7 607 84 HOH HOH . 
K 6 HOH A 8 608 14 HOH HOH . 
K 6 HOH A 9 609 44 HOH HOH . 
K 6 HOH A 10 610 22 HOH HOH . 
K 6 HOH A 11 611 87 HOH HOH . 
K 6 HOH A 12 612 101 HOH HOH . 
K 6 HOH A 13 613 92 HOH HOH . 
K 6 HOH A 14 614 111 HOH HOH . 
K 6 HOH A 15 615 16 HOH HOH . 
K 6 HOH A 16 616 30 HOH HOH . 
K 6 HOH A 17 617 63 HOH HOH . 
K 6 HOH A 18 618 103 HOH HOH . 
K 6 HOH A 19 619 18 HOH HOH . 
K 6 HOH A 20 620 110 HOH HOH . 
K 6 HOH A 21 621 62 HOH HOH . 
K 6 HOH A 22 622 105 HOH HOH . 
K 6 HOH A 23 623 67 HOH HOH . 
K 6 HOH A 24 624 6 HOH HOH . 
K 6 HOH A 25 625 28 HOH HOH . 
K 6 HOH A 26 626 55 HOH HOH . 
K 6 HOH A 27 627 46 HOH HOH . 
K 6 HOH A 28 628 12 HOH HOH . 
K 6 HOH A 29 629 5 HOH HOH . 
K 6 HOH A 30 630 47 HOH HOH . 
K 6 HOH A 31 631 76 HOH HOH . 
K 6 HOH A 32 632 74 HOH HOH . 
K 6 HOH A 33 633 26 HOH HOH . 
K 6 HOH A 34 634 109 HOH HOH . 
K 6 HOH A 35 635 25 HOH HOH . 
K 6 HOH A 36 636 40 HOH HOH . 
K 6 HOH A 37 637 93 HOH HOH . 
K 6 HOH A 38 638 69 HOH HOH . 
K 6 HOH A 39 639 71 HOH HOH . 
K 6 HOH A 40 640 90 HOH HOH . 
K 6 HOH A 41 641 39 HOH HOH . 
K 6 HOH A 42 642 15 HOH HOH . 
K 6 HOH A 43 643 77 HOH HOH . 
K 6 HOH A 44 644 104 HOH HOH . 
K 6 HOH A 45 645 9 HOH HOH . 
K 6 HOH A 46 646 1 HOH HOH . 
K 6 HOH A 47 647 80 HOH HOH . 
K 6 HOH A 48 648 23 HOH HOH . 
K 6 HOH A 49 649 45 HOH HOH . 
K 6 HOH A 50 650 68 HOH HOH . 
K 6 HOH A 51 651 13 HOH HOH . 
K 6 HOH A 52 652 89 HOH HOH . 
K 6 HOH A 53 653 10 HOH HOH . 
K 6 HOH A 54 654 64 HOH HOH . 
K 6 HOH A 55 655 66 HOH HOH . 
K 6 HOH A 56 656 21 HOH HOH . 
K 6 HOH A 57 657 32 HOH HOH . 
K 6 HOH A 58 658 33 HOH HOH . 
K 6 HOH A 59 659 43 HOH HOH . 
K 6 HOH A 60 660 24 HOH HOH . 
K 6 HOH A 61 661 49 HOH HOH . 
K 6 HOH A 62 662 36 HOH HOH . 
K 6 HOH A 63 663 58 HOH HOH . 
K 6 HOH A 64 664 31 HOH HOH . 
K 6 HOH A 65 665 102 HOH HOH . 
K 6 HOH A 66 666 19 HOH HOH . 
K 6 HOH A 67 667 94 HOH HOH . 
K 6 HOH A 68 668 70 HOH HOH . 
K 6 HOH A 69 669 91 HOH HOH . 
K 6 HOH A 70 670 54 HOH HOH . 
K 6 HOH A 71 671 82 HOH HOH . 
K 6 HOH A 72 672 38 HOH HOH . 
K 6 HOH A 73 673 27 HOH HOH . 
K 6 HOH A 74 674 97 HOH HOH . 
K 6 HOH A 75 675 8 HOH HOH . 
K 6 HOH A 76 676 106 HOH HOH . 
K 6 HOH A 77 677 53 HOH HOH . 
K 6 HOH A 78 678 37 HOH HOH . 
K 6 HOH A 79 679 4 HOH HOH . 
K 6 HOH A 80 680 52 HOH HOH . 
K 6 HOH A 81 681 29 HOH HOH . 
K 6 HOH A 82 682 48 HOH HOH . 
K 6 HOH A 83 683 35 HOH HOH . 
K 6 HOH A 84 684 78 HOH HOH . 
K 6 HOH A 85 685 57 HOH HOH . 
K 6 HOH A 86 686 81 HOH HOH . 
K 6 HOH A 87 687 88 HOH HOH . 
K 6 HOH A 88 688 72 HOH HOH . 
K 6 HOH A 89 689 73 HOH HOH . 
K 6 HOH A 90 690 79 HOH HOH . 
L 6 HOH D 1 901 96 HOH HOH . 
L 6 HOH D 2 902 41 HOH HOH . 
L 6 HOH D 3 903 107 HOH HOH . 
L 6 HOH D 4 904 17 HOH HOH . 
L 6 HOH D 5 905 75 HOH HOH . 
L 6 HOH D 6 906 100 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -3.167 
_atom_site.Cartn_y               -9.327 
_atom_site.Cartn_z               17.915 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        62.6 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#