data_5EXG # _model_server_result.job_id eWdGO9d-aPzGBhFOKU509w _model_server_result.datetime_utc '2024-11-12 21:03:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5exg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 5EXG # _exptl.entry_id 5EXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EXG _cell.length_a 47.53 _cell.length_b 63.33 _cell.length_c 95.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5EXG _atom_sites.fract_transf_matrix[1][1] 0.021039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 201 2 GOL GOL . D 2 GOL A 1 202 4 GOL GOL . E 2 GOL A 1 203 5 GOL GOL . F 2 GOL A 1 204 6 GOL GOL . G 2 GOL A 1 205 7 GOL GOL . H 2 GOL A 1 206 8 GOL GOL . I 2 GOL B 1 201 1 GOL GOL . J 2 GOL B 1 202 3 GOL GOL . K 3 BR B 1 203 1 BR BR . L 4 HOH A 1 301 158 HOH HOH . L 4 HOH A 2 302 135 HOH HOH . L 4 HOH A 3 303 46 HOH HOH . L 4 HOH A 4 304 44 HOH HOH . L 4 HOH A 5 305 47 HOH HOH . L 4 HOH A 6 306 126 HOH HOH . L 4 HOH A 7 307 42 HOH HOH . L 4 HOH A 8 308 23 HOH HOH . L 4 HOH A 9 309 34 HOH HOH . L 4 HOH A 10 310 112 HOH HOH . L 4 HOH A 11 311 125 HOH HOH . L 4 HOH A 12 312 113 HOH HOH . L 4 HOH A 13 313 129 HOH HOH . L 4 HOH A 14 314 76 HOH HOH . L 4 HOH A 15 315 39 HOH HOH . L 4 HOH A 16 316 43 HOH HOH . L 4 HOH A 17 317 33 HOH HOH . L 4 HOH A 18 318 32 HOH HOH . L 4 HOH A 19 319 45 HOH HOH . L 4 HOH A 20 320 12 HOH HOH . L 4 HOH A 21 321 101 HOH HOH . L 4 HOH A 22 322 3 HOH HOH . L 4 HOH A 23 323 137 HOH HOH . L 4 HOH A 24 324 28 HOH HOH . L 4 HOH A 25 325 1 HOH HOH . L 4 HOH A 26 326 140 HOH HOH . L 4 HOH A 27 327 9 HOH HOH . L 4 HOH A 28 328 68 HOH HOH . L 4 HOH A 29 329 20 HOH HOH . L 4 HOH A 30 330 81 HOH HOH . L 4 HOH A 31 331 50 HOH HOH . L 4 HOH A 32 332 118 HOH HOH . L 4 HOH A 33 333 30 HOH HOH . L 4 HOH A 34 334 121 HOH HOH . L 4 HOH A 35 335 124 HOH HOH . L 4 HOH A 36 336 64 HOH HOH . L 4 HOH A 37 337 144 HOH HOH . L 4 HOH A 38 338 162 HOH HOH . L 4 HOH A 39 339 117 HOH HOH . L 4 HOH A 40 340 57 HOH HOH . L 4 HOH A 41 341 21 HOH HOH . L 4 HOH A 42 342 141 HOH HOH . L 4 HOH A 43 343 35 HOH HOH . L 4 HOH A 44 344 56 HOH HOH . L 4 HOH A 45 345 114 HOH HOH . L 4 HOH A 46 346 109 HOH HOH . L 4 HOH A 47 347 59 HOH HOH . L 4 HOH A 48 348 22 HOH HOH . L 4 HOH A 49 349 145 HOH HOH . L 4 HOH A 50 350 131 HOH HOH . L 4 HOH A 51 351 14 HOH HOH . L 4 HOH A 52 352 160 HOH HOH . L 4 HOH A 53 353 111 HOH HOH . L 4 HOH A 54 354 108 HOH HOH . L 4 HOH A 55 355 139 HOH HOH . L 4 HOH A 56 356 123 HOH HOH . L 4 HOH A 57 357 73 HOH HOH . L 4 HOH A 58 358 19 HOH HOH . L 4 HOH A 59 359 116 HOH HOH . L 4 HOH A 60 360 61 HOH HOH . L 4 HOH A 61 361 75 HOH HOH . L 4 HOH A 62 362 25 HOH HOH . L 4 HOH A 63 363 62 HOH HOH . L 4 HOH A 64 364 163 HOH HOH . L 4 HOH A 65 365 4 HOH HOH . L 4 HOH A 66 366 164 HOH HOH . L 4 HOH A 67 367 58 HOH HOH . L 4 HOH A 68 368 69 HOH HOH . L 4 HOH A 69 369 6 HOH HOH . L 4 HOH A 70 370 71 HOH HOH . L 4 HOH A 71 371 154 HOH HOH . L 4 HOH A 72 372 119 HOH HOH . L 4 HOH A 73 373 67 HOH HOH . L 4 HOH A 74 374 134 HOH HOH . L 4 HOH A 75 375 159 HOH HOH . L 4 HOH A 76 376 132 HOH HOH . L 4 HOH A 77 377 104 HOH HOH . L 4 HOH A 78 378 161 HOH HOH . L 4 HOH A 79 379 60 HOH HOH . L 4 HOH A 80 380 8 HOH HOH . L 4 HOH A 81 381 115 HOH HOH . L 4 HOH A 82 382 7 HOH HOH . L 4 HOH A 83 383 136 HOH HOH . L 4 HOH A 84 384 156 HOH HOH . L 4 HOH A 85 385 127 HOH HOH . L 4 HOH A 86 386 122 HOH HOH . L 4 HOH A 87 387 5 HOH HOH . M 4 HOH B 1 301 149 HOH HOH . M 4 HOH B 2 302 90 HOH HOH . M 4 HOH B 3 303 155 HOH HOH . M 4 HOH B 4 304 152 HOH HOH . M 4 HOH B 5 305 138 HOH HOH . M 4 HOH B 6 306 37 HOH HOH . M 4 HOH B 7 307 70 HOH HOH . M 4 HOH B 8 308 18 HOH HOH . M 4 HOH B 9 309 95 HOH HOH . M 4 HOH B 10 310 38 HOH HOH . M 4 HOH B 11 311 88 HOH HOH . M 4 HOH B 12 312 96 HOH HOH . M 4 HOH B 13 313 106 HOH HOH . M 4 HOH B 14 314 31 HOH HOH . M 4 HOH B 15 315 29 HOH HOH . M 4 HOH B 16 316 48 HOH HOH . M 4 HOH B 17 317 133 HOH HOH . M 4 HOH B 18 318 97 HOH HOH . M 4 HOH B 19 319 24 HOH HOH . M 4 HOH B 20 320 92 HOH HOH . M 4 HOH B 21 321 102 HOH HOH . M 4 HOH B 22 322 53 HOH HOH . M 4 HOH B 23 323 103 HOH HOH . M 4 HOH B 24 324 15 HOH HOH . M 4 HOH B 25 325 65 HOH HOH . M 4 HOH B 26 326 94 HOH HOH . M 4 HOH B 27 327 84 HOH HOH . M 4 HOH B 28 328 83 HOH HOH . M 4 HOH B 29 329 77 HOH HOH . M 4 HOH B 30 330 93 HOH HOH . M 4 HOH B 31 331 99 HOH HOH . M 4 HOH B 32 332 27 HOH HOH . M 4 HOH B 33 333 52 HOH HOH . M 4 HOH B 34 334 100 HOH HOH . M 4 HOH B 35 335 55 HOH HOH . M 4 HOH B 36 336 110 HOH HOH . M 4 HOH B 37 337 49 HOH HOH . M 4 HOH B 38 338 85 HOH HOH . M 4 HOH B 39 339 78 HOH HOH . M 4 HOH B 40 340 148 HOH HOH . M 4 HOH B 41 341 40 HOH HOH . M 4 HOH B 42 342 146 HOH HOH . M 4 HOH B 43 343 2 HOH HOH . M 4 HOH B 44 344 36 HOH HOH . M 4 HOH B 45 345 107 HOH HOH . M 4 HOH B 46 346 63 HOH HOH . M 4 HOH B 47 347 153 HOH HOH . M 4 HOH B 48 348 142 HOH HOH . M 4 HOH B 49 349 11 HOH HOH . M 4 HOH B 50 350 74 HOH HOH . M 4 HOH B 51 351 87 HOH HOH . M 4 HOH B 52 352 86 HOH HOH . M 4 HOH B 53 353 98 HOH HOH . M 4 HOH B 54 354 10 HOH HOH . M 4 HOH B 55 355 91 HOH HOH . M 4 HOH B 56 356 82 HOH HOH . M 4 HOH B 57 357 26 HOH HOH . M 4 HOH B 58 358 143 HOH HOH . M 4 HOH B 59 359 16 HOH HOH . M 4 HOH B 60 360 89 HOH HOH . M 4 HOH B 61 361 120 HOH HOH . M 4 HOH B 62 362 105 HOH HOH . M 4 HOH B 63 363 79 HOH HOH . M 4 HOH B 64 364 72 HOH HOH . M 4 HOH B 65 365 128 HOH HOH . M 4 HOH B 66 366 157 HOH HOH . M 4 HOH B 67 367 17 HOH HOH . M 4 HOH B 68 368 54 HOH HOH . M 4 HOH B 69 369 41 HOH HOH . M 4 HOH B 70 370 151 HOH HOH . M 4 HOH B 71 371 147 HOH HOH . M 4 HOH B 72 372 13 HOH HOH . M 4 HOH B 73 373 150 HOH HOH . M 4 HOH B 74 374 66 HOH HOH . M 4 HOH B 75 375 51 HOH HOH . M 4 HOH B 76 376 130 HOH HOH . M 4 HOH B 77 377 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 19.245 -3.798 135.864 1 28.79 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . G 2 18.811 -2.462 135.709 1 30.06 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . G 2 18.913 -4.655 134.598 1 28.79 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . G 2 17.535 -4.45 134.208 1 19.46 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . G 2 19.889 -4.272 133.494 1 27.75 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . G 2 19.69 -5.005 132.319 1 24.59 ? O3 GOL 205 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #