data_5EXI # _model_server_result.job_id 1D-MO6Q96YZ4BRTVvYb0CQ _model_server_result.datetime_utc '2024-11-16 09:43:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5exi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5EXI # _exptl.entry_id 5EXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EXI _cell.length_a 48.663 _cell.length_b 57.815 _cell.length_c 116.568 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 75 A CYS 55 1_555 C FE3 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc2 A SG CYS 80 A CYS 60 1_555 C FE1 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 A SG CYS 86 A CYS 66 1_555 C FE2 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 A SG CYS 101 A CYS 81 1_555 B FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc5 A SG CYS 105 A CYS 85 1_555 B FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 A SG CYS 108 A CYS 88 1_555 B FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 A OG SER 312 A SER 292 1_555 C FE4 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 B FE3 SF4 . A SF4 401 1_555 D S4 DTV . A DTV 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 307 n n FE1 S3 SF4 sing 308 n n FE1 S4 SF4 sing 309 n n FE2 S1 SF4 sing 310 n n FE2 S3 SF4 sing 311 n n FE2 S4 SF4 sing 312 n n FE3 S1 SF4 sing 313 n n FE3 S2 SF4 sing 314 n n FE3 S4 SF4 sing 315 n n FE4 S1 SF4 sing 316 n n FE4 S2 SF4 sing 317 n n FE4 S3 SF4 sing 318 n n # _atom_sites.entry_id 5EXI _atom_sites.fract_transf_matrix[1][1] 0.020549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 401 503 SF4 SF4 . C 2 SF4 A 1 402 503 SF4 FS4 . D 3 DTV A 1 403 1 DTV DTV . E 4 HOH A 1 501 219 HOH HOH . E 4 HOH A 2 502 166 HOH HOH . E 4 HOH A 3 503 169 HOH HOH . E 4 HOH A 4 504 196 HOH HOH . E 4 HOH A 5 505 124 HOH HOH . E 4 HOH A 6 506 154 HOH HOH . E 4 HOH A 7 507 118 HOH HOH . E 4 HOH A 8 508 119 HOH HOH . E 4 HOH A 9 509 134 HOH HOH . E 4 HOH A 10 510 162 HOH HOH . E 4 HOH A 11 511 41 HOH HOH . E 4 HOH A 12 512 132 HOH HOH . E 4 HOH A 13 513 143 HOH HOH . E 4 HOH A 14 514 148 HOH HOH . E 4 HOH A 15 515 13 HOH HOH . E 4 HOH A 16 516 184 HOH HOH . E 4 HOH A 17 517 192 HOH HOH . E 4 HOH A 18 518 171 HOH HOH . E 4 HOH A 19 519 149 HOH HOH . E 4 HOH A 20 520 97 HOH HOH . E 4 HOH A 21 521 146 HOH HOH . E 4 HOH A 22 522 32 HOH HOH . E 4 HOH A 23 523 108 HOH HOH . E 4 HOH A 24 524 39 HOH HOH . E 4 HOH A 25 525 82 HOH HOH . E 4 HOH A 26 526 174 HOH HOH . E 4 HOH A 27 527 198 HOH HOH . E 4 HOH A 28 528 57 HOH HOH . E 4 HOH A 29 529 61 HOH HOH . E 4 HOH A 30 530 43 HOH HOH . E 4 HOH A 31 531 56 HOH HOH . E 4 HOH A 32 532 1 HOH HOH . E 4 HOH A 33 533 78 HOH HOH . E 4 HOH A 34 534 185 HOH HOH . E 4 HOH A 35 535 48 HOH HOH . E 4 HOH A 36 536 96 HOH HOH . E 4 HOH A 37 537 18 HOH HOH . E 4 HOH A 38 538 60 HOH HOH . E 4 HOH A 39 539 30 HOH HOH . E 4 HOH A 40 540 25 HOH HOH . E 4 HOH A 41 541 74 HOH HOH . E 4 HOH A 42 542 53 HOH HOH . E 4 HOH A 43 543 215 HOH HOH . E 4 HOH A 44 544 3 HOH HOH . E 4 HOH A 45 545 16 HOH HOH . E 4 HOH A 46 546 72 HOH HOH . E 4 HOH A 47 547 77 HOH HOH . E 4 HOH A 48 548 101 HOH HOH . E 4 HOH A 49 549 54 HOH HOH . E 4 HOH A 50 550 46 HOH HOH . E 4 HOH A 51 551 103 HOH HOH . E 4 HOH A 52 552 2 HOH HOH . E 4 HOH A 53 553 179 HOH HOH . E 4 HOH A 54 554 15 HOH HOH . E 4 HOH A 55 555 147 HOH HOH . E 4 HOH A 56 556 10 HOH HOH . E 4 HOH A 57 557 160 HOH HOH . E 4 HOH A 58 558 64 HOH HOH . E 4 HOH A 59 559 35 HOH HOH . E 4 HOH A 60 560 133 HOH HOH . E 4 HOH A 61 561 170 HOH HOH . E 4 HOH A 62 562 151 HOH HOH . E 4 HOH A 63 563 128 HOH HOH . E 4 HOH A 64 564 208 HOH HOH . E 4 HOH A 65 565 44 HOH HOH . E 4 HOH A 66 566 140 HOH HOH . E 4 HOH A 67 567 88 HOH HOH . E 4 HOH A 68 568 153 HOH HOH . E 4 HOH A 69 569 34 HOH HOH . E 4 HOH A 70 570 136 HOH HOH . E 4 HOH A 71 571 218 HOH HOH . E 4 HOH A 72 572 130 HOH HOH . E 4 HOH A 73 573 49 HOH HOH . E 4 HOH A 74 574 122 HOH HOH . E 4 HOH A 75 575 8 HOH HOH . E 4 HOH A 76 576 14 HOH HOH . E 4 HOH A 77 577 67 HOH HOH . E 4 HOH A 78 578 50 HOH HOH . E 4 HOH A 79 579 22 HOH HOH . E 4 HOH A 80 580 36 HOH HOH . E 4 HOH A 81 581 86 HOH HOH . E 4 HOH A 82 582 42 HOH HOH . E 4 HOH A 83 583 28 HOH HOH . E 4 HOH A 84 584 12 HOH HOH . E 4 HOH A 85 585 17 HOH HOH . E 4 HOH A 86 586 51 HOH HOH . E 4 HOH A 87 587 47 HOH HOH . E 4 HOH A 88 588 85 HOH HOH . E 4 HOH A 89 589 150 HOH HOH . E 4 HOH A 90 590 205 HOH HOH . E 4 HOH A 91 591 126 HOH HOH . E 4 HOH A 92 592 129 HOH HOH . E 4 HOH A 93 593 202 HOH HOH . E 4 HOH A 94 594 7 HOH HOH . E 4 HOH A 95 595 84 HOH HOH . E 4 HOH A 96 596 111 HOH HOH . E 4 HOH A 97 597 173 HOH HOH . E 4 HOH A 98 598 40 HOH HOH . E 4 HOH A 99 599 138 HOH HOH . E 4 HOH A 100 600 33 HOH HOH . E 4 HOH A 101 601 29 HOH HOH . E 4 HOH A 102 602 157 HOH HOH . E 4 HOH A 103 603 197 HOH HOH . E 4 HOH A 104 604 120 HOH HOH . E 4 HOH A 105 605 163 HOH HOH . E 4 HOH A 106 606 114 HOH HOH . E 4 HOH A 107 607 11 HOH HOH . E 4 HOH A 108 608 27 HOH HOH . E 4 HOH A 109 609 24 HOH HOH . E 4 HOH A 110 610 69 HOH HOH . E 4 HOH A 111 611 178 HOH HOH . E 4 HOH A 112 612 90 HOH HOH . E 4 HOH A 113 613 20 HOH HOH . E 4 HOH A 114 614 65 HOH HOH . E 4 HOH A 115 615 94 HOH HOH . E 4 HOH A 116 616 112 HOH HOH . E 4 HOH A 117 617 6 HOH HOH . E 4 HOH A 118 618 31 HOH HOH . E 4 HOH A 119 619 37 HOH HOH . E 4 HOH A 120 620 195 HOH HOH . E 4 HOH A 121 621 91 HOH HOH . E 4 HOH A 122 622 182 HOH HOH . E 4 HOH A 123 623 188 HOH HOH . E 4 HOH A 124 624 38 HOH HOH . E 4 HOH A 125 625 21 HOH HOH . E 4 HOH A 126 626 55 HOH HOH . E 4 HOH A 127 627 199 HOH HOH . E 4 HOH A 128 628 115 HOH HOH . E 4 HOH A 129 629 206 HOH HOH . E 4 HOH A 130 630 4 HOH HOH . E 4 HOH A 131 631 45 HOH HOH . E 4 HOH A 132 632 106 HOH HOH . E 4 HOH A 133 633 204 HOH HOH . E 4 HOH A 134 634 89 HOH HOH . E 4 HOH A 135 635 107 HOH HOH . E 4 HOH A 136 636 23 HOH HOH . E 4 HOH A 137 637 172 HOH HOH . E 4 HOH A 138 638 87 HOH HOH . E 4 HOH A 139 639 66 HOH HOH . E 4 HOH A 140 640 68 HOH HOH . E 4 HOH A 141 641 52 HOH HOH . E 4 HOH A 142 642 183 HOH HOH . E 4 HOH A 143 643 176 HOH HOH . E 4 HOH A 144 644 194 HOH HOH . E 4 HOH A 145 645 5 HOH HOH . E 4 HOH A 146 646 181 HOH HOH . E 4 HOH A 147 647 152 HOH HOH . E 4 HOH A 148 648 190 HOH HOH . E 4 HOH A 149 649 58 HOH HOH . E 4 HOH A 150 650 180 HOH HOH . E 4 HOH A 151 651 83 HOH HOH . E 4 HOH A 152 652 19 HOH HOH . E 4 HOH A 153 653 109 HOH HOH . E 4 HOH A 154 654 155 HOH HOH . E 4 HOH A 155 655 9 HOH HOH . E 4 HOH A 156 656 213 HOH HOH . E 4 HOH A 157 657 191 HOH HOH . E 4 HOH A 158 658 99 HOH HOH . E 4 HOH A 159 659 156 HOH HOH . E 4 HOH A 160 660 92 HOH HOH . E 4 HOH A 161 661 105 HOH HOH . E 4 HOH A 162 662 135 HOH HOH . E 4 HOH A 163 663 127 HOH HOH . E 4 HOH A 164 664 80 HOH HOH . E 4 HOH A 165 665 71 HOH HOH . E 4 HOH A 166 666 26 HOH HOH . E 4 HOH A 167 667 116 HOH HOH . E 4 HOH A 168 668 117 HOH HOH . E 4 HOH A 169 669 165 HOH HOH . E 4 HOH A 170 670 81 HOH HOH . E 4 HOH A 171 671 145 HOH HOH . E 4 HOH A 172 672 70 HOH HOH . E 4 HOH A 173 673 161 HOH HOH . E 4 HOH A 174 674 98 HOH HOH . E 4 HOH A 175 675 158 HOH HOH . E 4 HOH A 176 676 73 HOH HOH . E 4 HOH A 177 677 177 HOH HOH . E 4 HOH A 178 678 123 HOH HOH . E 4 HOH A 179 679 100 HOH HOH . E 4 HOH A 180 680 139 HOH HOH . E 4 HOH A 181 681 62 HOH HOH . E 4 HOH A 182 682 217 HOH HOH . E 4 HOH A 183 683 203 HOH HOH . E 4 HOH A 184 684 137 HOH HOH . E 4 HOH A 185 685 212 HOH HOH . E 4 HOH A 186 686 209 HOH HOH . E 4 HOH A 187 687 189 HOH HOH . E 4 HOH A 188 688 95 HOH HOH . E 4 HOH A 189 689 214 HOH HOH . E 4 HOH A 190 690 113 HOH HOH . E 4 HOH A 191 691 159 HOH HOH . E 4 HOH A 192 692 76 HOH HOH . E 4 HOH A 193 693 210 HOH HOH . E 4 HOH A 194 694 144 HOH HOH . E 4 HOH A 195 695 93 HOH HOH . E 4 HOH A 196 696 201 HOH HOH . E 4 HOH A 197 697 75 HOH HOH . E 4 HOH A 198 698 141 HOH HOH . E 4 HOH A 199 699 167 HOH HOH . E 4 HOH A 200 700 125 HOH HOH . E 4 HOH A 201 701 175 HOH HOH . E 4 HOH A 202 702 59 HOH HOH . E 4 HOH A 203 703 187 HOH HOH . E 4 HOH A 204 704 168 HOH HOH . E 4 HOH A 205 705 102 HOH HOH . E 4 HOH A 206 706 63 HOH HOH . E 4 HOH A 207 707 164 HOH HOH . E 4 HOH A 208 708 216 HOH HOH . E 4 HOH A 209 709 200 HOH HOH . E 4 HOH A 210 710 186 HOH HOH . E 4 HOH A 211 711 131 HOH HOH . E 4 HOH A 212 712 79 HOH HOH . E 4 HOH A 213 713 207 HOH HOH . E 4 HOH A 214 714 211 HOH HOH . E 4 HOH A 215 715 104 HOH HOH . E 4 HOH A 216 716 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 2 14.948 12.303 84.589 1 22.67 ? FE1 SF4 402 A 1 HETATM 2 FE FE2 SF4 . . . C 2 13.142 14.16 85.385 1 24.02 ? FE2 SF4 402 A 1 HETATM 3 FE FE3 SF4 . . . C 2 12.471 12.332 83.488 1 23.87 ? FE3 SF4 402 A 1 HETATM 4 FE FE4 SF4 . . . C 2 14.257 14.319 82.915 1 25.18 ? FE4 SF4 402 A 1 HETATM 5 S S1 SF4 . . . C 2 12.054 14.574 83.434 1 22 ? S1 SF4 402 A 1 HETATM 6 S S2 SF4 . . . C 2 14.464 12.116 82.393 1 22.27 ? S2 SF4 402 A 1 HETATM 7 S S3 SF4 . . . C 2 15.325 14.506 84.895 1 22.98 ? S3 SF4 402 A 1 HETATM 8 S S4 SF4 . . . C 2 12.969 11.907 85.648 1 21.74 ? S4 SF4 402 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #