data_5EXM # _model_server_result.job_id 4JZx9APDzeh3nNgg_orCxA _model_server_result.datetime_utc '2024-12-16 12:49:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5exm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 5EXM # _exptl.entry_id 5EXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EXM _cell.length_a 79.1 _cell.length_b 79.1 _cell.length_c 106.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 156 n n C1 C2 EDO sing 157 n n C1 H11 EDO sing 158 n n C1 H12 EDO sing 159 n n O1 HO1 EDO sing 160 n n C2 O2 EDO sing 161 n n C2 H21 EDO sing 162 n n C2 H22 EDO sing 163 n n O2 HO2 EDO sing 164 n n # _atom_sites.entry_id 5EXM _atom_sites.fract_transf_matrix[1][1] 0.012642 _atom_sites.fract_transf_matrix[1][2] 0.007299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5ST A 1 301 1 5ST LG1 . C 3 SO4 A 1 302 2 SO4 SO4 . D 3 SO4 A 1 303 3 SO4 SO4 . E 4 EDO A 1 304 4 EDO EDO . F 4 EDO A 1 305 7 EDO EDO . G 4 EDO A 1 306 10 EDO EDO . H 4 EDO A 1 307 11 EDO EDO . I 4 EDO A 1 308 16 EDO EDO . J 5 HOH A 1 401 29 HOH HOH . J 5 HOH A 2 402 202 HOH HOH . J 5 HOH A 3 403 67 HOH HOH . J 5 HOH A 4 404 196 HOH HOH . J 5 HOH A 5 405 188 HOH HOH . J 5 HOH A 6 406 26 HOH HOH . J 5 HOH A 7 407 200 HOH HOH . J 5 HOH A 8 408 190 HOH HOH . J 5 HOH A 9 409 116 HOH HOH . J 5 HOH A 10 410 14 HOH HOH . J 5 HOH A 11 411 120 HOH HOH . J 5 HOH A 12 412 123 HOH HOH . J 5 HOH A 13 413 117 HOH HOH . J 5 HOH A 14 414 60 HOH HOH . J 5 HOH A 15 415 91 HOH HOH . J 5 HOH A 16 416 20 HOH HOH . J 5 HOH A 17 417 147 HOH HOH . J 5 HOH A 18 418 40 HOH HOH . J 5 HOH A 19 419 131 HOH HOH . J 5 HOH A 20 420 9 HOH HOH . J 5 HOH A 21 421 25 HOH HOH . J 5 HOH A 22 422 48 HOH HOH . J 5 HOH A 23 423 4 HOH HOH . J 5 HOH A 24 424 33 HOH HOH . J 5 HOH A 25 425 179 HOH HOH . J 5 HOH A 26 426 19 HOH HOH . J 5 HOH A 27 427 136 HOH HOH . J 5 HOH A 28 428 194 HOH HOH . J 5 HOH A 29 429 68 HOH HOH . J 5 HOH A 30 430 118 HOH HOH . J 5 HOH A 31 431 44 HOH HOH . J 5 HOH A 32 432 2 HOH HOH . J 5 HOH A 33 433 115 HOH HOH . J 5 HOH A 34 434 66 HOH HOH . J 5 HOH A 35 435 197 HOH HOH . J 5 HOH A 36 436 8 HOH HOH . J 5 HOH A 37 437 90 HOH HOH . J 5 HOH A 38 438 146 HOH HOH . J 5 HOH A 39 439 149 HOH HOH . J 5 HOH A 40 440 12 HOH HOH . J 5 HOH A 41 441 87 HOH HOH . J 5 HOH A 42 442 167 HOH HOH . J 5 HOH A 43 443 65 HOH HOH . J 5 HOH A 44 444 21 HOH HOH . J 5 HOH A 45 445 17 HOH HOH . J 5 HOH A 46 446 81 HOH HOH . J 5 HOH A 47 447 137 HOH HOH . J 5 HOH A 48 448 134 HOH HOH . J 5 HOH A 49 449 119 HOH HOH . J 5 HOH A 50 450 11 HOH HOH . J 5 HOH A 51 451 82 HOH HOH . J 5 HOH A 52 452 166 HOH HOH . J 5 HOH A 53 453 5 HOH HOH . J 5 HOH A 54 454 89 HOH HOH . J 5 HOH A 55 455 140 HOH HOH . J 5 HOH A 56 456 49 HOH HOH . J 5 HOH A 57 457 1 HOH HOH . J 5 HOH A 58 458 24 HOH HOH . J 5 HOH A 59 459 160 HOH HOH . J 5 HOH A 60 460 203 HOH HOH . J 5 HOH A 61 461 145 HOH HOH . J 5 HOH A 62 462 28 HOH HOH . J 5 HOH A 63 463 55 HOH HOH . J 5 HOH A 64 464 15 HOH HOH . J 5 HOH A 65 465 88 HOH HOH . J 5 HOH A 66 466 7 HOH HOH . J 5 HOH A 67 467 27 HOH HOH . J 5 HOH A 68 468 127 HOH HOH . J 5 HOH A 69 469 62 HOH HOH . J 5 HOH A 70 470 171 HOH HOH . J 5 HOH A 71 471 162 HOH HOH . J 5 HOH A 72 472 43 HOH HOH . J 5 HOH A 73 473 53 HOH HOH . J 5 HOH A 74 474 178 HOH HOH . J 5 HOH A 75 475 30 HOH HOH . J 5 HOH A 76 476 153 HOH HOH . J 5 HOH A 77 477 191 HOH HOH . J 5 HOH A 78 478 78 HOH HOH . J 5 HOH A 79 479 169 HOH HOH . J 5 HOH A 80 480 18 HOH HOH . J 5 HOH A 81 481 111 HOH HOH . J 5 HOH A 82 482 125 HOH HOH . J 5 HOH A 83 483 135 HOH HOH . J 5 HOH A 84 484 85 HOH HOH . J 5 HOH A 85 485 105 HOH HOH . J 5 HOH A 86 486 154 HOH HOH . J 5 HOH A 87 487 114 HOH HOH . J 5 HOH A 88 488 52 HOH HOH . J 5 HOH A 89 489 165 HOH HOH . J 5 HOH A 90 490 6 HOH HOH . J 5 HOH A 91 491 126 HOH HOH . J 5 HOH A 92 492 3 HOH HOH . J 5 HOH A 93 493 113 HOH HOH . J 5 HOH A 94 494 41 HOH HOH . J 5 HOH A 95 495 13 HOH HOH . J 5 HOH A 96 496 57 HOH HOH . J 5 HOH A 97 497 110 HOH HOH . J 5 HOH A 98 498 46 HOH HOH . J 5 HOH A 99 499 59 HOH HOH . J 5 HOH A 100 500 96 HOH HOH . J 5 HOH A 101 501 64 HOH HOH . J 5 HOH A 102 502 31 HOH HOH . J 5 HOH A 103 503 172 HOH HOH . J 5 HOH A 104 504 35 HOH HOH . J 5 HOH A 105 505 22 HOH HOH . J 5 HOH A 106 506 70 HOH HOH . J 5 HOH A 107 507 69 HOH HOH . J 5 HOH A 108 508 133 HOH HOH . J 5 HOH A 109 509 77 HOH HOH . J 5 HOH A 110 510 205 HOH HOH . J 5 HOH A 111 511 10 HOH HOH . J 5 HOH A 112 512 47 HOH HOH . J 5 HOH A 113 513 185 HOH HOH . J 5 HOH A 114 514 72 HOH HOH . J 5 HOH A 115 515 148 HOH HOH . J 5 HOH A 116 516 158 HOH HOH . J 5 HOH A 117 517 189 HOH HOH . J 5 HOH A 118 518 74 HOH HOH . J 5 HOH A 119 519 79 HOH HOH . J 5 HOH A 120 520 130 HOH HOH . J 5 HOH A 121 521 175 HOH HOH . J 5 HOH A 122 522 124 HOH HOH . J 5 HOH A 123 523 39 HOH HOH . J 5 HOH A 124 524 101 HOH HOH . J 5 HOH A 125 525 23 HOH HOH . J 5 HOH A 126 526 121 HOH HOH . J 5 HOH A 127 527 100 HOH HOH . J 5 HOH A 128 528 95 HOH HOH . J 5 HOH A 129 529 195 HOH HOH . J 5 HOH A 130 530 61 HOH HOH . J 5 HOH A 131 531 16 HOH HOH . J 5 HOH A 132 532 129 HOH HOH . J 5 HOH A 133 533 76 HOH HOH . J 5 HOH A 134 534 198 HOH HOH . J 5 HOH A 135 535 45 HOH HOH . J 5 HOH A 136 536 99 HOH HOH . J 5 HOH A 137 537 71 HOH HOH . J 5 HOH A 138 538 32 HOH HOH . J 5 HOH A 139 539 142 HOH HOH . J 5 HOH A 140 540 152 HOH HOH . J 5 HOH A 141 541 56 HOH HOH . J 5 HOH A 142 542 86 HOH HOH . J 5 HOH A 143 543 54 HOH HOH . J 5 HOH A 144 544 102 HOH HOH . J 5 HOH A 145 545 144 HOH HOH . J 5 HOH A 146 546 51 HOH HOH . J 5 HOH A 147 547 42 HOH HOH . J 5 HOH A 148 548 34 HOH HOH . J 5 HOH A 149 549 50 HOH HOH . J 5 HOH A 150 550 184 HOH HOH . J 5 HOH A 151 551 139 HOH HOH . J 5 HOH A 152 552 204 HOH HOH . J 5 HOH A 153 553 36 HOH HOH . J 5 HOH A 154 554 107 HOH HOH . J 5 HOH A 155 555 104 HOH HOH . J 5 HOH A 156 556 92 HOH HOH . J 5 HOH A 157 557 163 HOH HOH . J 5 HOH A 158 558 75 HOH HOH . J 5 HOH A 159 559 63 HOH HOH . J 5 HOH A 160 560 93 HOH HOH . J 5 HOH A 161 561 83 HOH HOH . J 5 HOH A 162 562 164 HOH HOH . J 5 HOH A 163 563 138 HOH HOH . J 5 HOH A 164 564 187 HOH HOH . J 5 HOH A 165 565 38 HOH HOH . J 5 HOH A 166 566 151 HOH HOH . J 5 HOH A 167 567 84 HOH HOH . J 5 HOH A 168 568 103 HOH HOH . J 5 HOH A 169 569 159 HOH HOH . J 5 HOH A 170 570 128 HOH HOH . J 5 HOH A 171 571 132 HOH HOH . J 5 HOH A 172 572 80 HOH HOH . J 5 HOH A 173 573 106 HOH HOH . J 5 HOH A 174 574 155 HOH HOH . J 5 HOH A 175 575 37 HOH HOH . J 5 HOH A 176 576 199 HOH HOH . J 5 HOH A 177 577 156 HOH HOH . J 5 HOH A 178 578 58 HOH HOH . J 5 HOH A 179 579 112 HOH HOH . J 5 HOH A 180 580 73 HOH HOH . J 5 HOH A 181 581 192 HOH HOH . J 5 HOH A 182 582 161 HOH HOH . J 5 HOH A 183 583 122 HOH HOH . J 5 HOH A 184 584 170 HOH HOH . J 5 HOH A 185 585 176 HOH HOH . J 5 HOH A 186 586 157 HOH HOH . J 5 HOH A 187 587 141 HOH HOH . J 5 HOH A 188 588 108 HOH HOH . J 5 HOH A 189 589 94 HOH HOH . J 5 HOH A 190 590 109 HOH HOH . J 5 HOH A 191 591 150 HOH HOH . J 5 HOH A 192 592 186 HOH HOH . J 5 HOH A 193 593 143 HOH HOH . J 5 HOH A 194 594 206 HOH HOH . J 5 HOH A 195 595 173 HOH HOH . J 5 HOH A 196 596 181 HOH HOH . J 5 HOH A 197 597 168 HOH HOH . J 5 HOH A 198 598 177 HOH HOH . J 5 HOH A 199 599 98 HOH HOH . J 5 HOH A 200 600 182 HOH HOH . J 5 HOH A 201 601 193 HOH HOH . J 5 HOH A 202 602 180 HOH HOH . J 5 HOH A 203 603 183 HOH HOH . J 5 HOH A 204 604 97 HOH HOH . J 5 HOH A 205 605 174 HOH HOH . J 5 HOH A 206 606 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 17.101 -18.76 23.53 1 62.34 ? C1 EDO 307 A 1 HETATM 2 O O1 EDO . . . H 4 16.756 -17.585 24.275 1 64.47 ? O1 EDO 307 A 1 HETATM 3 C C2 EDO . . . H 4 16.6 -20.009 24.249 1 61.53 ? C2 EDO 307 A 1 HETATM 4 O O2 EDO . . . H 4 17.154 -20.079 25.571 1 67.01 ? O2 EDO 307 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #