data_5EXN # _model_server_result.job_id uCc01oL1mdUJf6rEEIXDDQ _model_server_result.datetime_utc '2024-12-16 10:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5exn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5EXN # _exptl.entry_id 5EXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EXN _cell.length_a 38.89 _cell.length_b 69.12 _cell.length_c 85.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 104 A ASN 113 1_555 B C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 309 n n C1 O1 NAG sing 310 n n C1 O5 NAG sing 311 n n C1 H1 NAG sing 312 n n C2 C3 NAG sing 313 n n C2 N2 NAG sing 314 n n C2 H2 NAG sing 315 n n C3 C4 NAG sing 316 n n C3 O3 NAG sing 317 n n C3 H3 NAG sing 318 n n C4 C5 NAG sing 319 n n C4 O4 NAG sing 320 n n C4 H4 NAG sing 321 n n C5 C6 NAG sing 322 n n C5 O5 NAG sing 323 n n C5 H5 NAG sing 324 n n C6 O6 NAG sing 325 n n C6 H61 NAG sing 326 n n C6 H62 NAG sing 327 n n C7 C8 NAG sing 328 n n C7 N2 NAG sing 329 n n C7 O7 NAG doub 330 n n C8 H81 NAG sing 331 n n C8 H82 NAG sing 332 n n C8 H83 NAG sing 333 n n N2 HN2 NAG sing 334 n n O1 HO1 NAG sing 335 n n O3 HO3 NAG sing 336 n n O4 HO4 NAG sing 337 n n O6 HO6 NAG sing 338 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5EXN _atom_sites.fract_transf_matrix[1][1] 0.025714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 301 NAG NAG . C 3 5SU A 1 302 1 5SU LG1 . D 4 HOH A 1 401 212 HOH HOH . D 4 HOH A 2 402 213 HOH HOH . D 4 HOH A 3 403 214 HOH HOH . D 4 HOH A 4 404 105 HOH HOH . D 4 HOH A 5 405 22 HOH HOH . D 4 HOH A 6 406 75 HOH HOH . D 4 HOH A 7 407 178 HOH HOH . D 4 HOH A 8 408 12 HOH HOH . D 4 HOH A 9 409 123 HOH HOH . D 4 HOH A 10 410 18 HOH HOH . D 4 HOH A 11 411 60 HOH HOH . D 4 HOH A 12 412 127 HOH HOH . D 4 HOH A 13 413 215 HOH HOH . D 4 HOH A 14 414 216 HOH HOH . D 4 HOH A 15 415 43 HOH HOH . D 4 HOH A 16 416 63 HOH HOH . D 4 HOH A 17 417 31 HOH HOH . D 4 HOH A 18 418 115 HOH HOH . D 4 HOH A 19 419 33 HOH HOH . D 4 HOH A 20 420 16 HOH HOH . D 4 HOH A 21 421 49 HOH HOH . D 4 HOH A 22 422 23 HOH HOH . D 4 HOH A 23 423 14 HOH HOH . D 4 HOH A 24 424 104 HOH HOH . D 4 HOH A 25 425 124 HOH HOH . D 4 HOH A 26 426 34 HOH HOH . D 4 HOH A 27 427 179 HOH HOH . D 4 HOH A 28 428 88 HOH HOH . D 4 HOH A 29 429 95 HOH HOH . D 4 HOH A 30 430 13 HOH HOH . D 4 HOH A 31 431 100 HOH HOH . D 4 HOH A 32 432 143 HOH HOH . D 4 HOH A 33 433 92 HOH HOH . D 4 HOH A 34 434 162 HOH HOH . D 4 HOH A 35 435 37 HOH HOH . D 4 HOH A 36 436 188 HOH HOH . D 4 HOH A 37 437 68 HOH HOH . D 4 HOH A 38 438 204 HOH HOH . D 4 HOH A 39 439 134 HOH HOH . D 4 HOH A 40 440 110 HOH HOH . D 4 HOH A 41 441 197 HOH HOH . D 4 HOH A 42 442 38 HOH HOH . D 4 HOH A 43 443 84 HOH HOH . D 4 HOH A 44 444 186 HOH HOH . D 4 HOH A 45 445 20 HOH HOH . D 4 HOH A 46 446 210 HOH HOH . D 4 HOH A 47 447 196 HOH HOH . D 4 HOH A 48 448 57 HOH HOH . D 4 HOH A 49 449 220 HOH HOH . D 4 HOH A 50 450 17 HOH HOH . D 4 HOH A 51 451 55 HOH HOH . D 4 HOH A 52 452 113 HOH HOH . D 4 HOH A 53 453 45 HOH HOH . D 4 HOH A 54 454 78 HOH HOH . D 4 HOH A 55 455 87 HOH HOH . D 4 HOH A 56 456 15 HOH HOH . D 4 HOH A 57 457 25 HOH HOH . D 4 HOH A 58 458 158 HOH HOH . D 4 HOH A 59 459 147 HOH HOH . D 4 HOH A 60 460 93 HOH HOH . D 4 HOH A 61 461 189 HOH HOH . D 4 HOH A 62 462 62 HOH HOH . D 4 HOH A 63 463 136 HOH HOH . D 4 HOH A 64 464 170 HOH HOH . D 4 HOH A 65 465 101 HOH HOH . D 4 HOH A 66 466 35 HOH HOH . D 4 HOH A 67 467 183 HOH HOH . D 4 HOH A 68 468 150 HOH HOH . D 4 HOH A 69 469 46 HOH HOH . D 4 HOH A 70 470 10 HOH HOH . D 4 HOH A 71 471 198 HOH HOH . D 4 HOH A 72 472 219 HOH HOH . D 4 HOH A 73 473 149 HOH HOH . D 4 HOH A 74 474 77 HOH HOH . D 4 HOH A 75 475 81 HOH HOH . D 4 HOH A 76 476 30 HOH HOH . D 4 HOH A 77 477 217 HOH HOH . D 4 HOH A 78 478 42 HOH HOH . D 4 HOH A 79 479 29 HOH HOH . D 4 HOH A 80 480 141 HOH HOH . D 4 HOH A 81 481 194 HOH HOH . D 4 HOH A 82 482 155 HOH HOH . D 4 HOH A 83 483 61 HOH HOH . D 4 HOH A 84 484 114 HOH HOH . D 4 HOH A 85 485 11 HOH HOH . D 4 HOH A 86 486 69 HOH HOH . D 4 HOH A 87 487 185 HOH HOH . D 4 HOH A 88 488 44 HOH HOH . D 4 HOH A 89 489 148 HOH HOH . D 4 HOH A 90 490 51 HOH HOH . D 4 HOH A 91 491 144 HOH HOH . D 4 HOH A 92 492 130 HOH HOH . D 4 HOH A 93 493 181 HOH HOH . D 4 HOH A 94 494 27 HOH HOH . D 4 HOH A 95 495 58 HOH HOH . D 4 HOH A 96 496 7 HOH HOH . D 4 HOH A 97 497 80 HOH HOH . D 4 HOH A 98 498 116 HOH HOH . D 4 HOH A 99 499 90 HOH HOH . D 4 HOH A 100 500 119 HOH HOH . D 4 HOH A 101 501 156 HOH HOH . D 4 HOH A 102 502 118 HOH HOH . D 4 HOH A 103 503 94 HOH HOH . D 4 HOH A 104 504 132 HOH HOH . D 4 HOH A 105 505 2 HOH HOH . D 4 HOH A 106 506 40 HOH HOH . D 4 HOH A 107 507 135 HOH HOH . D 4 HOH A 108 508 83 HOH HOH . D 4 HOH A 109 509 74 HOH HOH . D 4 HOH A 110 510 182 HOH HOH . D 4 HOH A 111 511 52 HOH HOH . D 4 HOH A 112 512 64 HOH HOH . D 4 HOH A 113 513 206 HOH HOH . D 4 HOH A 114 514 174 HOH HOH . D 4 HOH A 115 515 168 HOH HOH . D 4 HOH A 116 516 203 HOH HOH . D 4 HOH A 117 517 54 HOH HOH . D 4 HOH A 118 518 41 HOH HOH . D 4 HOH A 119 519 19 HOH HOH . D 4 HOH A 120 520 3 HOH HOH . D 4 HOH A 121 521 120 HOH HOH . D 4 HOH A 122 522 85 HOH HOH . D 4 HOH A 123 523 21 HOH HOH . D 4 HOH A 124 524 67 HOH HOH . D 4 HOH A 125 525 5 HOH HOH . D 4 HOH A 126 526 97 HOH HOH . D 4 HOH A 127 527 53 HOH HOH . D 4 HOH A 128 528 98 HOH HOH . D 4 HOH A 129 529 108 HOH HOH . D 4 HOH A 130 530 138 HOH HOH . D 4 HOH A 131 531 48 HOH HOH . D 4 HOH A 132 532 26 HOH HOH . D 4 HOH A 133 533 1 HOH HOH . D 4 HOH A 134 534 117 HOH HOH . D 4 HOH A 135 535 218 HOH HOH . D 4 HOH A 136 536 161 HOH HOH . D 4 HOH A 137 537 32 HOH HOH . D 4 HOH A 138 538 50 HOH HOH . D 4 HOH A 139 539 59 HOH HOH . D 4 HOH A 140 540 165 HOH HOH . D 4 HOH A 141 541 76 HOH HOH . D 4 HOH A 142 542 71 HOH HOH . D 4 HOH A 143 543 24 HOH HOH . D 4 HOH A 144 544 146 HOH HOH . D 4 HOH A 145 545 180 HOH HOH . D 4 HOH A 146 546 47 HOH HOH . D 4 HOH A 147 547 177 HOH HOH . D 4 HOH A 148 548 56 HOH HOH . D 4 HOH A 149 549 73 HOH HOH . D 4 HOH A 150 550 122 HOH HOH . D 4 HOH A 151 551 142 HOH HOH . D 4 HOH A 152 552 36 HOH HOH . D 4 HOH A 153 553 99 HOH HOH . D 4 HOH A 154 554 221 HOH HOH . D 4 HOH A 155 555 8 HOH HOH . D 4 HOH A 156 556 154 HOH HOH . D 4 HOH A 157 557 72 HOH HOH . D 4 HOH A 158 558 106 HOH HOH . D 4 HOH A 159 559 195 HOH HOH . D 4 HOH A 160 560 102 HOH HOH . D 4 HOH A 161 561 39 HOH HOH . D 4 HOH A 162 562 82 HOH HOH . D 4 HOH A 163 563 192 HOH HOH . D 4 HOH A 164 564 164 HOH HOH . D 4 HOH A 165 565 91 HOH HOH . D 4 HOH A 166 566 193 HOH HOH . D 4 HOH A 167 567 66 HOH HOH . D 4 HOH A 168 568 131 HOH HOH . D 4 HOH A 169 569 28 HOH HOH . D 4 HOH A 170 570 201 HOH HOH . D 4 HOH A 171 571 107 HOH HOH . D 4 HOH A 172 572 175 HOH HOH . D 4 HOH A 173 573 121 HOH HOH . D 4 HOH A 174 574 133 HOH HOH . D 4 HOH A 175 575 112 HOH HOH . D 4 HOH A 176 576 209 HOH HOH . D 4 HOH A 177 577 65 HOH HOH . D 4 HOH A 178 578 111 HOH HOH . D 4 HOH A 179 579 109 HOH HOH . D 4 HOH A 180 580 79 HOH HOH . D 4 HOH A 181 581 70 HOH HOH . D 4 HOH A 182 582 4 HOH HOH . D 4 HOH A 183 583 86 HOH HOH . D 4 HOH A 184 584 6 HOH HOH . D 4 HOH A 185 585 167 HOH HOH . D 4 HOH A 186 586 199 HOH HOH . D 4 HOH A 187 587 129 HOH HOH . D 4 HOH A 188 588 163 HOH HOH . D 4 HOH A 189 589 157 HOH HOH . D 4 HOH A 190 590 137 HOH HOH . D 4 HOH A 191 591 211 HOH HOH . D 4 HOH A 192 592 205 HOH HOH . D 4 HOH A 193 593 160 HOH HOH . D 4 HOH A 194 594 191 HOH HOH . D 4 HOH A 195 595 200 HOH HOH . D 4 HOH A 196 596 96 HOH HOH . D 4 HOH A 197 597 139 HOH HOH . D 4 HOH A 198 598 208 HOH HOH . D 4 HOH A 199 599 103 HOH HOH . D 4 HOH A 200 600 187 HOH HOH . D 4 HOH A 201 601 89 HOH HOH . D 4 HOH A 202 602 171 HOH HOH . D 4 HOH A 203 603 125 HOH HOH . D 4 HOH A 204 604 151 HOH HOH . D 4 HOH A 205 605 172 HOH HOH . D 4 HOH A 206 606 140 HOH HOH . D 4 HOH A 207 607 207 HOH HOH . D 4 HOH A 208 608 145 HOH HOH . D 4 HOH A 209 609 159 HOH HOH . D 4 HOH A 210 610 126 HOH HOH . D 4 HOH A 211 611 9 HOH HOH . D 4 HOH A 212 612 190 HOH HOH . D 4 HOH A 213 613 169 HOH HOH . D 4 HOH A 214 614 153 HOH HOH . D 4 HOH A 215 615 166 HOH HOH . D 4 HOH A 216 616 173 HOH HOH . D 4 HOH A 217 617 128 HOH HOH . D 4 HOH A 218 618 184 HOH HOH . D 4 HOH A 219 619 152 HOH HOH . D 4 HOH A 220 620 176 HOH HOH . D 4 HOH A 221 621 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -19.347 -2.038 7.409 1 25.61 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . B 2 -18.011 -2.387 8.07 1 21.89 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . B 2 -18.214 -3.485 9.117 1 24.58 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . B 2 -19.359 -3.151 10.065 1 30.74 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . B 2 -20.635 -2.884 9.27 1 31.69 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . B 2 -21.808 -2.485 10.141 1 36.6 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . B 2 -16.232 -2.126 6.348 1 19.79 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . B 2 -15.472 -2.855 5.28 1 20.88 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . B 2 -17.107 -2.869 7.036 1 20.17 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . B 2 -17.005 -3.595 9.86 1 22.66 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . B 2 -19.578 -4.247 10.947 1 31.22 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . B 2 -20.397 -1.797 8.354 1 28.84 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . B 2 -21.618 -1.194 10.702 1 42.15 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . B 2 -16.084 -0.923 6.548 1 23.73 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 581 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #