data_5EXP # _model_server_result.job_id XbvOOUEWJrycOert8_k65A _model_server_result.datetime_utc '2025-02-20 15:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5exp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5EXP # _exptl.entry_id 5EXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EXP _cell.length_a 104.907 _cell.length_b 104.907 _cell.length_c 42.752 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 1 2 A,B,C,D,E,F,G,H 1 3 A,B,C,D,E,F,G,H 1 4 A,B,C,D,E,F,G,H 1 5 A,B,C,D,E,F,G,H 1 6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z+2/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 28.501333 3 'crystal symmetry operation' 3_555 -x+y,-x,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 14.250667 4 'crystal symmetry operation' 4_555 -x,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 0 0 21.376 5 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 7.125333 6 'crystal symmetry operation' 6_555 x-y,x,z+5/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 35.626667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5EXP _atom_sites.fract_transf_matrix[1][1] 0.009532 _atom_sites.fract_transf_matrix[1][2] 0.005503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 3 EDO A 1 403 1 EDO EDO . E 3 EDO A 1 404 2 EDO EDO . F 3 EDO A 1 405 3 EDO EDO . G 3 EDO A 1 406 1 EDO EDO . H 4 HOH A 1 501 90 HOH HOH . H 4 HOH A 2 502 127 HOH HOH . H 4 HOH A 3 503 148 HOH HOH . H 4 HOH A 4 504 70 HOH HOH . H 4 HOH A 5 505 144 HOH HOH . H 4 HOH A 6 506 163 HOH HOH . H 4 HOH A 7 507 117 HOH HOH . H 4 HOH A 8 508 22 HOH HOH . H 4 HOH A 9 509 57 HOH HOH . H 4 HOH A 10 510 217 HOH HOH . H 4 HOH A 11 511 182 HOH HOH . H 4 HOH A 12 512 13 HOH HOH . H 4 HOH A 13 513 242 HOH HOH . H 4 HOH A 14 514 59 HOH HOH . H 4 HOH A 15 515 121 HOH HOH . H 4 HOH A 16 516 241 HOH HOH . H 4 HOH A 17 517 86 HOH HOH . H 4 HOH A 18 518 58 HOH HOH . H 4 HOH A 19 519 253 HOH HOH . H 4 HOH A 20 520 178 HOH HOH . H 4 HOH A 21 521 39 HOH HOH . H 4 HOH A 22 522 81 HOH HOH . H 4 HOH A 23 523 210 HOH HOH . H 4 HOH A 24 524 95 HOH HOH . H 4 HOH A 25 525 27 HOH HOH . H 4 HOH A 26 526 176 HOH HOH . H 4 HOH A 27 527 44 HOH HOH . H 4 HOH A 28 528 47 HOH HOH . H 4 HOH A 29 529 103 HOH HOH . H 4 HOH A 30 530 82 HOH HOH . H 4 HOH A 31 531 136 HOH HOH . H 4 HOH A 32 532 122 HOH HOH . H 4 HOH A 33 533 187 HOH HOH . H 4 HOH A 34 534 94 HOH HOH . H 4 HOH A 35 535 169 HOH HOH . H 4 HOH A 36 536 34 HOH HOH . H 4 HOH A 37 537 197 HOH HOH . H 4 HOH A 38 538 76 HOH HOH . H 4 HOH A 39 539 7 HOH HOH . H 4 HOH A 40 540 18 HOH HOH . H 4 HOH A 41 541 156 HOH HOH . H 4 HOH A 42 542 130 HOH HOH . H 4 HOH A 43 543 24 HOH HOH . H 4 HOH A 44 544 3 HOH HOH . H 4 HOH A 45 545 75 HOH HOH . H 4 HOH A 46 546 221 HOH HOH . H 4 HOH A 47 547 2 HOH HOH . H 4 HOH A 48 548 140 HOH HOH . H 4 HOH A 49 549 92 HOH HOH . H 4 HOH A 50 550 200 HOH HOH . H 4 HOH A 51 551 259 HOH HOH . H 4 HOH A 52 552 102 HOH HOH . H 4 HOH A 53 553 107 HOH HOH . H 4 HOH A 54 554 64 HOH HOH . H 4 HOH A 55 555 138 HOH HOH . H 4 HOH A 56 556 128 HOH HOH . H 4 HOH A 57 557 248 HOH HOH . H 4 HOH A 58 558 60 HOH HOH . H 4 HOH A 59 559 93 HOH HOH . H 4 HOH A 60 560 100 HOH HOH . H 4 HOH A 61 561 4 HOH HOH . H 4 HOH A 62 562 83 HOH HOH . H 4 HOH A 63 563 226 HOH HOH . H 4 HOH A 64 564 135 HOH HOH . H 4 HOH A 65 565 250 HOH HOH . H 4 HOH A 66 566 155 HOH HOH . H 4 HOH A 67 567 5 HOH HOH . H 4 HOH A 68 568 232 HOH HOH . H 4 HOH A 69 569 30 HOH HOH . H 4 HOH A 70 570 66 HOH HOH . H 4 HOH A 71 571 50 HOH HOH . H 4 HOH A 72 572 16 HOH HOH . H 4 HOH A 73 573 120 HOH HOH . H 4 HOH A 74 574 88 HOH HOH . H 4 HOH A 75 575 20 HOH HOH . H 4 HOH A 76 576 53 HOH HOH . H 4 HOH A 77 577 65 HOH HOH . H 4 HOH A 78 578 28 HOH HOH . H 4 HOH A 79 579 19 HOH HOH . H 4 HOH A 80 580 1 HOH HOH . H 4 HOH A 81 581 203 HOH HOH . H 4 HOH A 82 582 267 HOH HOH . H 4 HOH A 83 583 108 HOH HOH . H 4 HOH A 84 584 61 HOH HOH . H 4 HOH A 85 585 209 HOH HOH . H 4 HOH A 86 586 115 HOH HOH . H 4 HOH A 87 587 214 HOH HOH . H 4 HOH A 88 588 104 HOH HOH . H 4 HOH A 89 589 126 HOH HOH . H 4 HOH A 90 590 68 HOH HOH . H 4 HOH A 91 591 79 HOH HOH . H 4 HOH A 92 592 33 HOH HOH . H 4 HOH A 93 593 222 HOH HOH . H 4 HOH A 94 594 29 HOH HOH . H 4 HOH A 95 595 175 HOH HOH . H 4 HOH A 96 596 180 HOH HOH . H 4 HOH A 97 597 41 HOH HOH . H 4 HOH A 98 598 77 HOH HOH . H 4 HOH A 99 599 32 HOH HOH . H 4 HOH A 100 600 62 HOH HOH . H 4 HOH A 101 601 189 HOH HOH . H 4 HOH A 102 602 109 HOH HOH . H 4 HOH A 103 603 71 HOH HOH . H 4 HOH A 104 604 118 HOH HOH . H 4 HOH A 105 605 42 HOH HOH . H 4 HOH A 106 606 26 HOH HOH . H 4 HOH A 107 607 80 HOH HOH . H 4 HOH A 108 608 89 HOH HOH . H 4 HOH A 109 609 63 HOH HOH . H 4 HOH A 110 610 186 HOH HOH . H 4 HOH A 111 611 73 HOH HOH . H 4 HOH A 112 612 174 HOH HOH . H 4 HOH A 113 613 91 HOH HOH . H 4 HOH A 114 614 8 HOH HOH . H 4 HOH A 115 615 110 HOH HOH . H 4 HOH A 116 616 36 HOH HOH . H 4 HOH A 117 617 245 HOH HOH . H 4 HOH A 118 618 161 HOH HOH . H 4 HOH A 119 619 52 HOH HOH . H 4 HOH A 120 620 45 HOH HOH . H 4 HOH A 121 621 67 HOH HOH . H 4 HOH A 122 622 43 HOH HOH . H 4 HOH A 123 623 14 HOH HOH . H 4 HOH A 124 624 85 HOH HOH . H 4 HOH A 125 625 10 HOH HOH . H 4 HOH A 126 626 25 HOH HOH . H 4 HOH A 127 627 142 HOH HOH . H 4 HOH A 128 628 37 HOH HOH . H 4 HOH A 129 629 78 HOH HOH . H 4 HOH A 130 630 183 HOH HOH . H 4 HOH A 131 631 134 HOH HOH . H 4 HOH A 132 632 160 HOH HOH . H 4 HOH A 133 633 55 HOH HOH . H 4 HOH A 134 634 15 HOH HOH . H 4 HOH A 135 635 157 HOH HOH . H 4 HOH A 136 636 46 HOH HOH . H 4 HOH A 137 637 96 HOH HOH . H 4 HOH A 138 638 72 HOH HOH . H 4 HOH A 139 639 125 HOH HOH . H 4 HOH A 140 640 84 HOH HOH . H 4 HOH A 141 641 141 HOH HOH . H 4 HOH A 142 642 171 HOH HOH . H 4 HOH A 143 643 6 HOH HOH . H 4 HOH A 144 644 49 HOH HOH . H 4 HOH A 145 645 261 HOH HOH . H 4 HOH A 146 646 54 HOH HOH . H 4 HOH A 147 647 239 HOH HOH . H 4 HOH A 148 648 170 HOH HOH . H 4 HOH A 149 649 258 HOH HOH . H 4 HOH A 150 650 21 HOH HOH . H 4 HOH A 151 651 31 HOH HOH . H 4 HOH A 152 652 207 HOH HOH . H 4 HOH A 153 653 111 HOH HOH . H 4 HOH A 154 654 234 HOH HOH . H 4 HOH A 155 655 158 HOH HOH . H 4 HOH A 156 656 260 HOH HOH . H 4 HOH A 157 657 17 HOH HOH . H 4 HOH A 158 658 87 HOH HOH . H 4 HOH A 159 659 143 HOH HOH . H 4 HOH A 160 660 191 HOH HOH . H 4 HOH A 161 661 212 HOH HOH . H 4 HOH A 162 662 112 HOH HOH . H 4 HOH A 163 663 225 HOH HOH . H 4 HOH A 164 664 238 HOH HOH . H 4 HOH A 165 665 11 HOH HOH . H 4 HOH A 166 666 165 HOH HOH . H 4 HOH A 167 667 40 HOH HOH . H 4 HOH A 168 668 164 HOH HOH . H 4 HOH A 169 669 249 HOH HOH . H 4 HOH A 170 670 97 HOH HOH . H 4 HOH A 171 671 38 HOH HOH . H 4 HOH A 172 672 153 HOH HOH . H 4 HOH A 173 673 9 HOH HOH . H 4 HOH A 174 674 131 HOH HOH . H 4 HOH A 175 675 223 HOH HOH . H 4 HOH A 176 676 236 HOH HOH . H 4 HOH A 177 677 51 HOH HOH . H 4 HOH A 178 678 243 HOH HOH . H 4 HOH A 179 679 192 HOH HOH . H 4 HOH A 180 680 208 HOH HOH . H 4 HOH A 181 681 151 HOH HOH . H 4 HOH A 182 682 244 HOH HOH . H 4 HOH A 183 683 119 HOH HOH . H 4 HOH A 184 684 202 HOH HOH . H 4 HOH A 185 685 145 HOH HOH . H 4 HOH A 186 686 224 HOH HOH . H 4 HOH A 187 687 230 HOH HOH . H 4 HOH A 188 688 231 HOH HOH . H 4 HOH A 189 689 113 HOH HOH . H 4 HOH A 190 690 233 HOH HOH . H 4 HOH A 191 691 213 HOH HOH . H 4 HOH A 192 692 179 HOH HOH . H 4 HOH A 193 693 106 HOH HOH . H 4 HOH A 194 694 216 HOH HOH . H 4 HOH A 195 695 137 HOH HOH . H 4 HOH A 196 696 206 HOH HOH . H 4 HOH A 197 697 263 HOH HOH . H 4 HOH A 198 698 185 HOH HOH . H 4 HOH A 199 699 265 HOH HOH . H 4 HOH A 200 700 262 HOH HOH . H 4 HOH A 201 701 264 HOH HOH . H 4 HOH A 202 702 56 HOH HOH . H 4 HOH A 203 703 196 HOH HOH . H 4 HOH A 204 704 124 HOH HOH . H 4 HOH A 205 705 237 HOH HOH . H 4 HOH A 206 706 152 HOH HOH . H 4 HOH A 207 707 69 HOH HOH . H 4 HOH A 208 708 116 HOH HOH . H 4 HOH A 209 709 173 HOH HOH . H 4 HOH A 210 710 215 HOH HOH . H 4 HOH A 211 711 149 HOH HOH . H 4 HOH A 212 712 193 HOH HOH . H 4 HOH A 213 713 181 HOH HOH . H 4 HOH A 214 714 166 HOH HOH . H 4 HOH A 215 715 159 HOH HOH . H 4 HOH A 216 716 266 HOH HOH . H 4 HOH A 217 717 133 HOH HOH . H 4 HOH A 218 718 235 HOH HOH . H 4 HOH A 219 719 205 HOH HOH . H 4 HOH A 220 720 256 HOH HOH . H 4 HOH A 221 721 150 HOH HOH . H 4 HOH A 222 722 229 HOH HOH . H 4 HOH A 223 723 99 HOH HOH . H 4 HOH A 224 724 211 HOH HOH . H 4 HOH A 225 725 194 HOH HOH . H 4 HOH A 226 726 74 HOH HOH . H 4 HOH A 227 727 227 HOH HOH . H 4 HOH A 228 728 105 HOH HOH . H 4 HOH A 229 729 132 HOH HOH . H 4 HOH A 230 730 167 HOH HOH . H 4 HOH A 231 731 146 HOH HOH . H 4 HOH A 232 732 219 HOH HOH . H 4 HOH A 233 733 35 HOH HOH . H 4 HOH A 234 734 154 HOH HOH . H 4 HOH A 235 735 190 HOH HOH . H 4 HOH A 236 736 162 HOH HOH . H 4 HOH A 237 737 220 HOH HOH . H 4 HOH A 238 738 139 HOH HOH . H 4 HOH A 239 739 204 HOH HOH . H 4 HOH A 240 740 12 HOH HOH . H 4 HOH A 241 741 147 HOH HOH . H 4 HOH A 242 742 123 HOH HOH . H 4 HOH A 243 743 114 HOH HOH . H 4 HOH A 244 744 268 HOH HOH . H 4 HOH A 245 745 198 HOH HOH . H 4 HOH A 246 746 228 HOH HOH . H 4 HOH A 247 747 101 HOH HOH . H 4 HOH A 248 748 199 HOH HOH . H 4 HOH A 249 749 254 HOH HOH . H 4 HOH A 250 750 252 HOH HOH . H 4 HOH A 251 751 23 HOH HOH . H 4 HOH A 252 752 195 HOH HOH . H 4 HOH A 253 753 240 HOH HOH . H 4 HOH A 254 754 172 HOH HOH . H 4 HOH A 255 755 168 HOH HOH . H 4 HOH A 256 756 129 HOH HOH . H 4 HOH A 257 757 177 HOH HOH . H 4 HOH A 258 758 201 HOH HOH . H 4 HOH A 259 759 184 HOH HOH . H 4 HOH A 260 760 48 HOH HOH . H 4 HOH A 261 761 257 HOH HOH . H 4 HOH A 262 762 98 HOH HOH . H 4 HOH A 263 763 246 HOH HOH . H 4 HOH A 264 764 218 HOH HOH . H 4 HOH A 265 765 251 HOH HOH . H 4 HOH A 266 766 188 HOH HOH . H 4 HOH A 267 767 247 HOH HOH . H 4 HOH A 268 768 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 28.109 22.263 1.136 1 29.11 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 3 27.593 20.964 1.445 1 33.85 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 3 29.57 22.314 1.554 1 28.34 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 3 30.308 21.377 0.767 1 34.13 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #