data_5EXY # _model_server_result.job_id Xgr-inytP2DnZXHpFtdN0g _model_server_result.datetime_utc '2024-11-09 02:33:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5exy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5EXY # _exptl.entry_id 5EXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EXY _cell.length_a 103.18 _cell.length_b 103.18 _cell.length_c 103.18 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 103.18 103.18 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 103.18 0 103.18 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 103.18 103.18 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 103.18 103.18 7 'crystal symmetry operation' 7_665 -z+1,-x+1,y 0 0 -1 -1 0 0 0 1 0 103.18 103.18 0 8 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 103.18 0 103.18 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_656 -y+1,z,-x+1 0 -1 0 0 0 1 -1 0 0 103.18 0 103.18 11 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 103.18 103.18 12 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 103.18 103.18 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 C MG MG . A MG 302 1_555 G O3G CTP . A CTP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc2 C MG MG . A MG 302 1_555 G O2A CTP . A CTP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 C MG MG . A MG 302 1_555 G O2B CTP . A CTP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 C MG MG . A MG 302 1_555 I O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc5 C MG MG . A MG 302 1_555 I O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 D MG MG . A MG 303 1_555 F O3G ATP . A ATP 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc7 D MG MG . A MG 303 1_555 F O1A ATP . A ATP 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 D MG MG . A MG 303 1_555 F O1B ATP . A ATP 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc9 D MG MG . A MG 303 1_555 I O HOH . A HOH 413 19_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc10 D MG MG . A MG 303 1_555 I O HOH . A HOH 423 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc11 D MG MG . A MG 303 1_555 I O HOH . A HOH 429 19_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 E MG MG . A MG 304 1_555 H O1B GTP . A GTP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc13 E MG MG . A MG 304 1_555 H O1A GTP . A GTP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc14 E MG MG . A MG 304 1_555 H O3G GTP . A GTP 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EXY _atom_sites.fract_transf_matrix[1][1] 0.009692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 301 249 CL CL . C 3 MG A 1 302 250 MG MG . D 3 MG A 1 303 251 MG MG . E 3 MG A 1 304 252 MG MG . F 4 ATP A 1 305 253 ATP ATP . G 5 CTP A 1 306 254 CTP CTP . H 6 GTP A 1 307 255 GTP GTP . I 7 HOH A 1 401 485 HOH HOH . I 7 HOH A 2 402 420 HOH HOH . I 7 HOH A 3 403 455 HOH HOH . I 7 HOH A 4 404 419 HOH HOH . I 7 HOH A 5 405 288 HOH HOH . I 7 HOH A 6 406 476 HOH HOH . I 7 HOH A 7 407 301 HOH HOH . I 7 HOH A 8 408 417 HOH HOH . I 7 HOH A 9 409 344 HOH HOH . I 7 HOH A 10 410 435 HOH HOH . I 7 HOH A 11 411 473 HOH HOH . I 7 HOH A 12 412 283 HOH HOH . I 7 HOH A 13 413 447 HOH HOH . I 7 HOH A 14 414 482 HOH HOH . I 7 HOH A 15 415 461 HOH HOH . I 7 HOH A 16 416 275 HOH HOH . I 7 HOH A 17 417 262 HOH HOH . I 7 HOH A 18 418 440 HOH HOH . I 7 HOH A 19 419 484 HOH HOH . I 7 HOH A 20 420 319 HOH HOH . I 7 HOH A 21 421 354 HOH HOH . I 7 HOH A 22 422 289 HOH HOH . I 7 HOH A 23 423 445 HOH HOH . I 7 HOH A 24 424 318 HOH HOH . I 7 HOH A 25 425 414 HOH HOH . I 7 HOH A 26 426 450 HOH HOH . I 7 HOH A 27 427 365 HOH HOH . I 7 HOH A 28 428 416 HOH HOH . I 7 HOH A 29 429 446 HOH HOH . I 7 HOH A 30 430 314 HOH HOH . I 7 HOH A 31 431 341 HOH HOH . I 7 HOH A 32 432 324 HOH HOH . I 7 HOH A 33 433 307 HOH HOH . I 7 HOH A 34 434 298 HOH HOH . I 7 HOH A 35 435 460 HOH HOH . I 7 HOH A 36 436 268 HOH HOH . I 7 HOH A 37 437 295 HOH HOH . I 7 HOH A 38 438 479 HOH HOH . I 7 HOH A 39 439 429 HOH HOH . I 7 HOH A 40 440 267 HOH HOH . I 7 HOH A 41 441 375 HOH HOH . I 7 HOH A 42 442 259 HOH HOH . I 7 HOH A 43 443 356 HOH HOH . I 7 HOH A 44 444 379 HOH HOH . I 7 HOH A 45 445 316 HOH HOH . I 7 HOH A 46 446 427 HOH HOH . I 7 HOH A 47 447 325 HOH HOH . I 7 HOH A 48 448 264 HOH HOH . I 7 HOH A 49 449 464 HOH HOH . I 7 HOH A 50 450 457 HOH HOH . I 7 HOH A 51 451 278 HOH HOH . I 7 HOH A 52 452 358 HOH HOH . I 7 HOH A 53 453 428 HOH HOH . I 7 HOH A 54 454 391 HOH HOH . I 7 HOH A 55 455 329 HOH HOH . I 7 HOH A 56 456 311 HOH HOH . I 7 HOH A 57 457 338 HOH HOH . I 7 HOH A 58 458 410 HOH HOH . I 7 HOH A 59 459 441 HOH HOH . I 7 HOH A 60 460 433 HOH HOH . I 7 HOH A 61 461 453 HOH HOH . I 7 HOH A 62 462 328 HOH HOH . I 7 HOH A 63 463 297 HOH HOH . I 7 HOH A 64 464 274 HOH HOH . I 7 HOH A 65 465 330 HOH HOH . I 7 HOH A 66 466 292 HOH HOH . I 7 HOH A 67 467 395 HOH HOH . I 7 HOH A 68 468 406 HOH HOH . I 7 HOH A 69 469 293 HOH HOH . I 7 HOH A 70 470 257 HOH HOH . I 7 HOH A 71 471 399 HOH HOH . I 7 HOH A 72 472 277 HOH HOH . I 7 HOH A 73 473 418 HOH HOH . I 7 HOH A 74 474 347 HOH HOH . I 7 HOH A 75 475 342 HOH HOH . I 7 HOH A 76 476 385 HOH HOH . I 7 HOH A 77 477 422 HOH HOH . I 7 HOH A 78 478 454 HOH HOH . I 7 HOH A 79 479 377 HOH HOH . I 7 HOH A 80 480 378 HOH HOH . I 7 HOH A 81 481 280 HOH HOH . I 7 HOH A 82 482 285 HOH HOH . I 7 HOH A 83 483 409 HOH HOH . I 7 HOH A 84 484 371 HOH HOH . I 7 HOH A 85 485 368 HOH HOH . I 7 HOH A 86 486 415 HOH HOH . I 7 HOH A 87 487 361 HOH HOH . I 7 HOH A 88 488 452 HOH HOH . I 7 HOH A 89 489 332 HOH HOH . I 7 HOH A 90 490 411 HOH HOH . I 7 HOH A 91 491 322 HOH HOH . I 7 HOH A 92 492 463 HOH HOH . I 7 HOH A 93 493 308 HOH HOH . I 7 HOH A 94 494 402 HOH HOH . I 7 HOH A 95 495 261 HOH HOH . I 7 HOH A 96 496 270 HOH HOH . I 7 HOH A 97 497 291 HOH HOH . I 7 HOH A 98 498 374 HOH HOH . I 7 HOH A 99 499 281 HOH HOH . I 7 HOH A 100 500 466 HOH HOH . I 7 HOH A 101 501 360 HOH HOH . I 7 HOH A 102 502 294 HOH HOH . I 7 HOH A 103 503 279 HOH HOH . I 7 HOH A 104 504 472 HOH HOH . I 7 HOH A 105 505 340 HOH HOH . I 7 HOH A 106 506 273 HOH HOH . I 7 HOH A 107 507 380 HOH HOH . I 7 HOH A 108 508 284 HOH HOH . I 7 HOH A 109 509 299 HOH HOH . I 7 HOH A 110 510 350 HOH HOH . I 7 HOH A 111 511 256 HOH HOH . I 7 HOH A 112 512 310 HOH HOH . I 7 HOH A 113 513 337 HOH HOH . I 7 HOH A 114 514 331 HOH HOH . I 7 HOH A 115 515 302 HOH HOH . I 7 HOH A 116 516 303 HOH HOH . I 7 HOH A 117 517 265 HOH HOH . I 7 HOH A 118 518 459 HOH HOH . I 7 HOH A 119 519 334 HOH HOH . I 7 HOH A 120 520 373 HOH HOH . I 7 HOH A 121 521 286 HOH HOH . I 7 HOH A 122 522 345 HOH HOH . I 7 HOH A 123 523 321 HOH HOH . I 7 HOH A 124 524 401 HOH HOH . I 7 HOH A 125 525 349 HOH HOH . I 7 HOH A 126 526 432 HOH HOH . I 7 HOH A 127 527 260 HOH HOH . I 7 HOH A 128 528 339 HOH HOH . I 7 HOH A 129 529 263 HOH HOH . I 7 HOH A 130 530 258 HOH HOH . I 7 HOH A 131 531 372 HOH HOH . I 7 HOH A 132 532 364 HOH HOH . I 7 HOH A 133 533 357 HOH HOH . I 7 HOH A 134 534 381 HOH HOH . I 7 HOH A 135 535 408 HOH HOH . I 7 HOH A 136 536 426 HOH HOH . I 7 HOH A 137 537 276 HOH HOH . I 7 HOH A 138 538 390 HOH HOH . I 7 HOH A 139 539 269 HOH HOH . I 7 HOH A 140 540 282 HOH HOH . I 7 HOH A 141 541 367 HOH HOH . I 7 HOH A 142 542 348 HOH HOH . I 7 HOH A 143 543 456 HOH HOH . I 7 HOH A 144 544 412 HOH HOH . I 7 HOH A 145 545 431 HOH HOH . I 7 HOH A 146 546 304 HOH HOH . I 7 HOH A 147 547 290 HOH HOH . I 7 HOH A 148 548 271 HOH HOH . I 7 HOH A 149 549 272 HOH HOH . I 7 HOH A 150 550 287 HOH HOH . I 7 HOH A 151 551 383 HOH HOH . I 7 HOH A 152 552 423 HOH HOH . I 7 HOH A 153 553 437 HOH HOH . I 7 HOH A 154 554 306 HOH HOH . I 7 HOH A 155 555 266 HOH HOH . I 7 HOH A 156 556 421 HOH HOH . I 7 HOH A 157 557 392 HOH HOH . I 7 HOH A 158 558 369 HOH HOH . I 7 HOH A 159 559 424 HOH HOH . I 7 HOH A 160 560 376 HOH HOH . I 7 HOH A 161 561 359 HOH HOH . I 7 HOH A 162 562 370 HOH HOH . I 7 HOH A 163 563 439 HOH HOH . I 7 HOH A 164 564 449 HOH HOH . I 7 HOH A 165 565 305 HOH HOH . I 7 HOH A 166 566 309 HOH HOH . I 7 HOH A 167 567 443 HOH HOH . I 7 HOH A 168 568 362 HOH HOH . I 7 HOH A 169 569 317 HOH HOH . I 7 HOH A 170 570 451 HOH HOH . I 7 HOH A 171 571 343 HOH HOH . I 7 HOH A 172 572 465 HOH HOH . I 7 HOH A 173 573 352 HOH HOH . I 7 HOH A 174 574 483 HOH HOH . I 7 HOH A 175 575 312 HOH HOH . I 7 HOH A 176 576 366 HOH HOH . I 7 HOH A 177 577 467 HOH HOH . I 7 HOH A 178 578 436 HOH HOH . I 7 HOH A 179 579 444 HOH HOH . I 7 HOH A 180 580 351 HOH HOH . I 7 HOH A 181 581 333 HOH HOH . I 7 HOH A 182 582 448 HOH HOH . I 7 HOH A 183 583 425 HOH HOH . I 7 HOH A 184 584 458 HOH HOH . I 7 HOH A 185 585 384 HOH HOH . I 7 HOH A 186 586 480 HOH HOH . I 7 HOH A 187 587 404 HOH HOH . I 7 HOH A 188 588 335 HOH HOH . I 7 HOH A 189 589 470 HOH HOH . I 7 HOH A 190 590 481 HOH HOH . I 7 HOH A 191 591 477 HOH HOH . I 7 HOH A 192 592 387 HOH HOH . I 7 HOH A 193 593 386 HOH HOH . I 7 HOH A 194 594 469 HOH HOH . I 7 HOH A 195 595 389 HOH HOH . I 7 HOH A 196 596 474 HOH HOH . I 7 HOH A 197 597 475 HOH HOH . I 7 HOH A 198 598 478 HOH HOH . I 7 HOH A 199 599 326 HOH HOH . I 7 HOH A 200 600 471 HOH HOH . I 7 HOH A 201 601 434 HOH HOH . I 7 HOH A 202 602 442 HOH HOH . I 7 HOH A 203 603 468 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 44.23 _atom_site.Cartn_y 24.269 _atom_site.Cartn_z -3.67 _atom_site.occupancy 0.54 _atom_site.B_iso_or_equiv 5.75 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #