data_5EY8 # _model_server_result.job_id -HHqIIrCQ-fU2WrtQZv8eg _model_server_result.datetime_utc '2024-11-05 00:20:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ey8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":702}' # _entry.id 5EY8 # _exptl.entry_id 5EY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EY8 _cell.length_a 164.04 _cell.length_b 164.04 _cell.length_c 231.53 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I 1 1 B,J 2 1 C,K 3 1 D,L 4 1 E,M,N 5 1 F,O,P 6 1 G,Q 7 1 H,R 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 P N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 228 n n C1 C2 GOL sing 229 n n C1 H11 GOL sing 230 n n C1 H12 GOL sing 231 n n O1 HO1 GOL sing 232 n n C2 O2 GOL sing 233 n n C2 C3 GOL sing 234 n n C2 H2 GOL sing 235 n n O2 HO2 GOL sing 236 n n C3 O3 GOL sing 237 n n C3 H31 GOL sing 238 n n C3 H32 GOL sing 239 n n O3 HO3 GOL sing 240 n n # _atom_sites.entry_id 5EY8 _atom_sites.fract_transf_matrix[1][1] 0.006096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 5SV A 1 701 631 5SV KK2 . J 2 5SV B 1 701 631 5SV KK2 . K 2 5SV C 1 701 631 5SV KK2 . L 2 5SV D 1 701 631 5SV KK2 . M 2 5SV E 1 701 631 5SV KK2 . N 3 GOL E 1 702 637 GOL GOL . O 2 5SV F 1 701 631 5SV KK2 . P 3 GOL F 1 702 637 GOL GOL . Q 2 5SV G 1 701 631 5SV KK2 . R 2 5SV H 1 701 631 5SV KK2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . P 3 57.405 49.123 286.297 1 36.18 ? C1 GOL 702 F 1 HETATM 2 O O1 GOL . . . P 3 57.457 48.062 287.23 1 35.05 ? O1 GOL 702 F 1 HETATM 3 C C2 GOL . . . P 3 55.982 49.332 285.776 1 37.31 ? C2 GOL 702 F 1 HETATM 4 O O2 GOL . . . P 3 55.787 48.633 284.565 1 40.48 ? O2 GOL 702 F 1 HETATM 5 C C3 GOL . . . P 3 55.724 50.819 285.553 1 35.17 ? C3 GOL 702 F 1 HETATM 6 O O3 GOL . . . P 3 54.456 51.022 284.963 1 35.16 ? O3 GOL 702 F 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #