data_5EYH
#
_model_server_result.job_id            JNvrMIxOpRA4230MDQAo4g 
_model_server_result.datetime_utc      '2024-12-02 04:05:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5eyh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5EYH 
#
_exptl.entry_id    5EYH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.28 
_cell.angle_gamma         90 
_cell.entry_id            5EYH 
_cell.length_a            64.505 
_cell.length_b            60.331 
_cell.length_c            79.939 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 70 A GLU 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc2 A OE1 GLU 70 A GLU 70 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc3 A OD1 ASP 88 A ASP 88 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc4 A OD2 ASP 88 A ASP 88 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
metalc ? metalc5 A OD2 ASP 88 A ASP 88 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc6 A O ILE 90 A ILE 90 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc7 A OD1 ASP 91 A ASP 91 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc8 A OD1 ASP 209 A ASP 209 1_555 G CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc9 C CA CA . A CA 301 1_555 H O3X NAP . A NAP 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc10 C CA CA . A CA 301 1_555 H O3X NAP . A NAP 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc11 C CA CA . A CA 301 1_555 L O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc12 C CA CA . A CA 301 1_555 L O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc13 D CA CA . A CA 302 1_555 H O1X NAP . A NAP 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc14 D CA CA . A CA 302 1_555 H O1X NAP . A NAP 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc15 D CA CA . A CA 302 1_555 L O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc16 D CA CA . A CA 302 1_555 L O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc17 D CA CA . A CA 302 1_555 L O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc18 D CA CA . A CA 302 1_555 L O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc19 D CA CA . A CA 302 1_555 L O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc20 G CA CA . A CA 305 1_555 H O3X NAP . A NAP 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc21 G CA CA . A CA 305 1_555 H O3X NAP . A NAP 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc22 G CA CA . A CA 305 1_555 H O2B NAP . A NAP 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc23 G CA CA . A CA 305 1_555 H O2B NAP . A NAP 306 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc24 G CA CA . A CA 305 1_555 L O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? 
metalc ? metalc25 B OE1 GLU 70 B GLU 70 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc26 B OD2 ASP 88 B ASP 88 1_555 I CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc27 B OD1 ASP 88 B ASP 88 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc28 B OD2 ASP 88 B ASP 88 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? 
metalc ? metalc29 B O ILE 90 B ILE 90 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc30 B OD1 ASP 91 B ASP 91 1_555 I CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc31 B OD1 ASP 209 B ASP 209 1_555 I CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc32 I CA CA . B CA 301 1_555 K O2B NAP . B NAP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc33 I CA CA . B CA 301 1_555 K O2X NAP . B NAP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc34 I CA CA . B CA 301 1_555 M O HOH . B HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc35 J CA CA . B CA 302 1_555 K O2X NAP . B NAP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc36 J CA CA . B CA 302 1_555 M O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc37 J CA CA . B CA 302 1_555 M O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5EYH 
_atom_sites.fract_transf_matrix[1][1]    0.015503 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005121 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016575 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 301 302 CA CA . 
D 2 CA A 1 302 303 CA CA . 
E 3 GOL A 1 303 304 GOL GOL . 
F 3 GOL A 1 304 303 GOL GOL . 
G 2 CA A 1 305 1 CA CA . 
H 4 NAP A 1 306 1 NAP NAP . 
I 2 CA B 1 301 301 CA CA . 
J 2 CA B 1 302 302 CA CA . 
K 4 NAP B 1 303 2 NAP NAP . 
L 5 HOH A 1 401 419 HOH HOH . 
L 5 HOH A 2 402 12 HOH HOH . 
L 5 HOH A 3 403 431 HOH HOH . 
L 5 HOH A 4 404 436 HOH HOH . 
L 5 HOH A 5 405 418 HOH HOH . 
L 5 HOH A 6 406 402 HOH HOH . 
L 5 HOH A 7 407 464 HOH HOH . 
L 5 HOH A 8 408 405 HOH HOH . 
L 5 HOH A 9 409 401 HOH HOH . 
L 5 HOH A 10 410 490 HOH HOH . 
L 5 HOH A 11 411 422 HOH HOH . 
L 5 HOH A 12 412 429 HOH HOH . 
L 5 HOH A 13 413 481 HOH HOH . 
L 5 HOH A 14 414 404 HOH HOH . 
L 5 HOH A 15 415 429 HOH HOH . 
L 5 HOH A 16 416 426 HOH HOH . 
L 5 HOH A 17 417 11 HOH HOH . 
L 5 HOH A 18 418 446 HOH HOH . 
L 5 HOH A 19 419 411 HOH HOH . 
L 5 HOH A 20 420 468 HOH HOH . 
L 5 HOH A 21 421 427 HOH HOH . 
L 5 HOH A 22 422 440 HOH HOH . 
L 5 HOH A 23 423 475 HOH HOH . 
L 5 HOH A 24 424 478 HOH HOH . 
L 5 HOH A 25 425 10 HOH HOH . 
L 5 HOH A 26 426 403 HOH HOH . 
L 5 HOH A 27 427 417 HOH HOH . 
L 5 HOH A 28 428 469 HOH HOH . 
L 5 HOH A 29 429 415 HOH HOH . 
L 5 HOH A 30 430 414 HOH HOH . 
L 5 HOH A 31 431 458 HOH HOH . 
L 5 HOH A 32 432 467 HOH HOH . 
L 5 HOH A 33 433 482 HOH HOH . 
L 5 HOH A 34 434 433 HOH HOH . 
L 5 HOH A 35 435 460 HOH HOH . 
L 5 HOH A 36 436 428 HOH HOH . 
L 5 HOH A 37 437 437 HOH HOH . 
L 5 HOH A 38 438 415 HOH HOH . 
L 5 HOH A 39 439 474 HOH HOH . 
L 5 HOH A 40 440 454 HOH HOH . 
L 5 HOH A 41 441 424 HOH HOH . 
L 5 HOH A 42 442 430 HOH HOH . 
L 5 HOH A 43 443 473 HOH HOH . 
L 5 HOH A 44 444 406 HOH HOH . 
L 5 HOH A 45 445 414 HOH HOH . 
L 5 HOH A 46 446 461 HOH HOH . 
L 5 HOH A 47 447 413 HOH HOH . 
L 5 HOH A 48 448 477 HOH HOH . 
L 5 HOH A 49 449 457 HOH HOH . 
L 5 HOH A 50 450 488 HOH HOH . 
L 5 HOH A 51 451 483 HOH HOH . 
L 5 HOH A 52 452 4 HOH HOH . 
L 5 HOH A 53 453 445 HOH HOH . 
L 5 HOH A 54 454 489 HOH HOH . 
L 5 HOH A 55 455 465 HOH HOH . 
L 5 HOH A 56 456 438 HOH HOH . 
L 5 HOH A 57 457 434 HOH HOH . 
L 5 HOH A 58 458 484 HOH HOH . 
L 5 HOH A 59 459 2 HOH HOH . 
L 5 HOH A 60 460 450 HOH HOH . 
L 5 HOH A 61 461 491 HOH HOH . 
L 5 HOH A 62 462 485 HOH HOH . 
L 5 HOH A 63 463 495 HOH HOH . 
L 5 HOH A 64 464 493 HOH HOH . 
L 5 HOH A 65 465 472 HOH HOH . 
L 5 HOH A 66 466 480 HOH HOH . 
L 5 HOH A 67 467 9 HOH HOH . 
L 5 HOH A 68 468 425 HOH HOH . 
L 5 HOH A 69 469 470 HOH HOH . 
L 5 HOH A 70 470 420 HOH HOH . 
L 5 HOH A 71 471 476 HOH HOH . 
L 5 HOH A 72 472 456 HOH HOH . 
L 5 HOH A 73 473 410 HOH HOH . 
L 5 HOH A 74 474 421 HOH HOH . 
L 5 HOH A 75 475 444 HOH HOH . 
L 5 HOH A 76 476 443 HOH HOH . 
L 5 HOH A 77 477 492 HOH HOH . 
L 5 HOH A 78 478 447 HOH HOH . 
L 5 HOH A 79 479 448 HOH HOH . 
L 5 HOH A 80 480 423 HOH HOH . 
L 5 HOH A 81 481 452 HOH HOH . 
L 5 HOH A 82 482 441 HOH HOH . 
L 5 HOH A 83 483 416 HOH HOH . 
L 5 HOH A 84 484 459 HOH HOH . 
L 5 HOH A 85 485 487 HOH HOH . 
L 5 HOH A 86 486 466 HOH HOH . 
L 5 HOH A 87 487 449 HOH HOH . 
L 5 HOH A 88 488 479 HOH HOH . 
L 5 HOH A 89 489 439 HOH HOH . 
L 5 HOH A 90 490 453 HOH HOH . 
L 5 HOH A 91 491 412 HOH HOH . 
L 5 HOH A 92 492 409 HOH HOH . 
L 5 HOH A 93 493 455 HOH HOH . 
L 5 HOH A 94 494 451 HOH HOH . 
L 5 HOH A 95 495 435 HOH HOH . 
L 5 HOH A 96 496 451 HOH HOH . 
L 5 HOH A 97 497 462 HOH HOH . 
L 5 HOH A 98 498 442 HOH HOH . 
L 5 HOH A 99 499 407 HOH HOH . 
L 5 HOH A 100 500 408 HOH HOH . 
L 5 HOH A 101 501 463 HOH HOH . 
L 5 HOH A 102 502 486 HOH HOH . 
M 5 HOH B 1 401 13 HOH HOH . 
M 5 HOH B 2 402 440 HOH HOH . 
M 5 HOH B 3 403 402 HOH HOH . 
M 5 HOH B 4 404 5 HOH HOH . 
M 5 HOH B 5 405 424 HOH HOH . 
M 5 HOH B 6 406 432 HOH HOH . 
M 5 HOH B 7 407 419 HOH HOH . 
M 5 HOH B 8 408 423 HOH HOH . 
M 5 HOH B 9 409 452 HOH HOH . 
M 5 HOH B 10 410 436 HOH HOH . 
M 5 HOH B 11 411 7 HOH HOH . 
M 5 HOH B 12 412 443 HOH HOH . 
M 5 HOH B 13 413 6 HOH HOH . 
M 5 HOH B 14 414 441 HOH HOH . 
M 5 HOH B 15 415 432 HOH HOH . 
M 5 HOH B 16 416 408 HOH HOH . 
M 5 HOH B 17 417 420 HOH HOH . 
M 5 HOH B 18 418 401 HOH HOH . 
M 5 HOH B 19 419 3 HOH HOH . 
M 5 HOH B 20 420 439 HOH HOH . 
M 5 HOH B 21 421 412 HOH HOH . 
M 5 HOH B 22 422 416 HOH HOH . 
M 5 HOH B 23 423 403 HOH HOH . 
M 5 HOH B 24 424 406 HOH HOH . 
M 5 HOH B 25 425 411 HOH HOH . 
M 5 HOH B 26 426 427 HOH HOH . 
M 5 HOH B 27 427 413 HOH HOH . 
M 5 HOH B 28 428 448 HOH HOH . 
M 5 HOH B 29 429 428 HOH HOH . 
M 5 HOH B 30 430 434 HOH HOH . 
M 5 HOH B 31 431 430 HOH HOH . 
M 5 HOH B 32 432 438 HOH HOH . 
M 5 HOH B 33 433 442 HOH HOH . 
M 5 HOH B 34 434 437 HOH HOH . 
M 5 HOH B 35 435 445 HOH HOH . 
M 5 HOH B 36 436 433 HOH HOH . 
M 5 HOH B 37 437 426 HOH HOH . 
M 5 HOH B 38 438 405 HOH HOH . 
M 5 HOH B 39 439 1 HOH HOH . 
M 5 HOH B 40 440 435 HOH HOH . 
M 5 HOH B 41 441 409 HOH HOH . 
M 5 HOH B 42 442 407 HOH HOH . 
M 5 HOH B 43 443 421 HOH HOH . 
M 5 HOH B 44 444 8 HOH HOH . 
M 5 HOH B 45 445 431 HOH HOH . 
M 5 HOH B 46 446 444 HOH HOH . 
M 5 HOH B 47 447 404 HOH HOH . 
M 5 HOH B 48 448 410 HOH HOH . 
M 5 HOH B 49 449 417 HOH HOH . 
M 5 HOH B 50 450 422 HOH HOH . 
M 5 HOH B 51 451 418 HOH HOH . 
M 5 HOH B 52 452 425 HOH HOH . 
M 5 HOH B 53 453 450 HOH HOH . 
M 5 HOH B 54 454 471 HOH HOH . 
M 5 HOH B 55 455 449 HOH HOH . 
M 5 HOH B 56 456 446 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -4.78 
_atom_site.Cartn_y               -14.338 
_atom_site.Cartn_z               12.643 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        29.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#