data_5EYL # _model_server_result.job_id eG-dwhrIA_19olSw9cV5SQ _model_server_result.datetime_utc '2024-11-22 21:47:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5EYL # _exptl.entry_id 5EYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EYL _cell.length_a 105.311 _cell.length_b 105.311 _cell.length_c 192.962 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5EYL _atom_sites.fract_transf_matrix[1][1] 0.009496 _atom_sites.fract_transf_matrix[1][2] 0.005482 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 201 1 PO4 PO4 . D 3 GOL A 1 202 4 GOL GOL . E 3 GOL B 1 201 1 GOL GOL . F 3 GOL B 1 202 2 GOL GOL . G 3 GOL B 1 203 3 GOL GOL . H 4 HOH A 1 301 53 HOH HOH . H 4 HOH A 2 302 13 HOH HOH . H 4 HOH A 3 303 40 HOH HOH . H 4 HOH A 4 304 14 HOH HOH . H 4 HOH A 5 305 74 HOH HOH . H 4 HOH A 6 306 48 HOH HOH . H 4 HOH A 7 307 25 HOH HOH . H 4 HOH A 8 308 1 HOH HOH . H 4 HOH A 9 309 12 HOH HOH . H 4 HOH A 10 310 93 HOH HOH . H 4 HOH A 11 311 77 HOH HOH . H 4 HOH A 12 312 33 HOH HOH . H 4 HOH A 13 313 2 HOH HOH . H 4 HOH A 14 314 24 HOH HOH . H 4 HOH A 15 315 3 HOH HOH . H 4 HOH A 16 316 62 HOH HOH . H 4 HOH A 17 317 65 HOH HOH . H 4 HOH A 18 318 4 HOH HOH . H 4 HOH A 19 319 23 HOH HOH . H 4 HOH A 20 320 36 HOH HOH . H 4 HOH A 21 321 70 HOH HOH . H 4 HOH A 22 322 18 HOH HOH . H 4 HOH A 23 323 29 HOH HOH . H 4 HOH A 24 324 63 HOH HOH . H 4 HOH A 25 325 58 HOH HOH . H 4 HOH A 26 326 88 HOH HOH . H 4 HOH A 27 327 83 HOH HOH . H 4 HOH A 28 328 90 HOH HOH . H 4 HOH A 29 329 81 HOH HOH . H 4 HOH A 30 330 41 HOH HOH . H 4 HOH A 31 331 61 HOH HOH . H 4 HOH A 32 332 26 HOH HOH . H 4 HOH A 33 333 46 HOH HOH . H 4 HOH A 34 334 43 HOH HOH . H 4 HOH A 35 335 60 HOH HOH . H 4 HOH A 36 336 30 HOH HOH . H 4 HOH A 37 337 57 HOH HOH . H 4 HOH A 38 338 84 HOH HOH . H 4 HOH A 39 339 72 HOH HOH . H 4 HOH A 40 340 47 HOH HOH . H 4 HOH A 41 341 66 HOH HOH . H 4 HOH A 42 342 19 HOH HOH . H 4 HOH A 43 343 34 HOH HOH . H 4 HOH A 44 344 17 HOH HOH . H 4 HOH A 45 345 38 HOH HOH . H 4 HOH A 46 346 39 HOH HOH . H 4 HOH A 47 347 59 HOH HOH . H 4 HOH A 48 348 86 HOH HOH . H 4 HOH A 49 349 85 HOH HOH . H 4 HOH A 50 350 52 HOH HOH . I 4 HOH B 1 301 7 HOH HOH . I 4 HOH B 2 302 92 HOH HOH . I 4 HOH B 3 303 68 HOH HOH . I 4 HOH B 4 304 8 HOH HOH . I 4 HOH B 5 305 20 HOH HOH . I 4 HOH B 6 306 94 HOH HOH . I 4 HOH B 7 307 91 HOH HOH . I 4 HOH B 8 308 31 HOH HOH . I 4 HOH B 9 309 27 HOH HOH . I 4 HOH B 10 310 79 HOH HOH . I 4 HOH B 11 311 78 HOH HOH . I 4 HOH B 12 312 10 HOH HOH . I 4 HOH B 13 313 11 HOH HOH . I 4 HOH B 14 314 56 HOH HOH . I 4 HOH B 15 315 51 HOH HOH . I 4 HOH B 16 316 82 HOH HOH . I 4 HOH B 17 317 42 HOH HOH . I 4 HOH B 18 318 80 HOH HOH . I 4 HOH B 19 319 89 HOH HOH . I 4 HOH B 20 320 9 HOH HOH . I 4 HOH B 21 321 50 HOH HOH . I 4 HOH B 22 322 95 HOH HOH . I 4 HOH B 23 323 73 HOH HOH . I 4 HOH B 24 324 64 HOH HOH . I 4 HOH B 25 325 37 HOH HOH . I 4 HOH B 26 326 32 HOH HOH . I 4 HOH B 27 327 55 HOH HOH . I 4 HOH B 28 328 75 HOH HOH . I 4 HOH B 29 329 22 HOH HOH . I 4 HOH B 30 330 96 HOH HOH . I 4 HOH B 31 331 16 HOH HOH . I 4 HOH B 32 332 44 HOH HOH . I 4 HOH B 33 333 87 HOH HOH . I 4 HOH B 34 334 35 HOH HOH . I 4 HOH B 35 335 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 29.167 12.514 -21.422 1 68.15 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . E 3 27.841 12.08 -21.209 1 68.42 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . E 3 30.045 12.041 -20.293 1 73.06 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . E 3 29.553 12.54 -19.037 1 74.67 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . E 3 31.439 12.559 -20.55 1 75.2 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . E 3 31.444 13.971 -20.494 1 77.33 ? O3 GOL 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #