data_5EYR # _model_server_result.job_id liWnNpKOcqhinQmB6aBZcg _model_server_result.datetime_utc '2025-01-25 11:34:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5EYR # _exptl.entry_id 5EYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.48 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[1-[4-(methylaminomethyl)phenyl]piperidin-4-yl]-1-pyrrolidin-1-yl-propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EYR _cell.length_a 120.885 _cell.length_b 120.885 _cell.length_c 33.829 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H31 N3 O' _chem_comp.formula_weight 329.48 _chem_comp.id 5T0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[1-[4-(methylaminomethyl)phenyl]piperidin-4-yl]-1-pyrrolidin-1-yl-propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C4 5T0 doub 1 n n C3 C2 5T0 sing 2 n n C3 N 5T0 sing 3 n n C2 C1 5T0 sing 4 n n C4 N 5T0 sing 5 n n C4 C5 5T0 sing 6 n n N C 5T0 sing 7 n n C6 C5 5T0 sing 8 n n C6 C7 5T0 sing 9 n n C8 C9 5T0 sing 10 n n C8 C7 5T0 sing 11 n n C1 C 5T0 sing 12 n n C9 N1 5T0 sing 13 n n C7 C11 5T0 sing 14 n n C11 C10 5T0 sing 15 n n N1 C12 5T0 sing 16 n n N1 C10 5T0 sing 17 n n C12 C13 5T0 doub 18 n y C12 C17 5T0 sing 19 n y C13 C14 5T0 sing 20 n y C17 C16 5T0 doub 21 n y C14 C15 5T0 doub 22 n y C16 C15 5T0 sing 23 n y C15 C18 5T0 sing 24 n n C18 N2 5T0 sing 25 n n N2 C19 5T0 sing 26 n n C14 H1 5T0 sing 27 n n C13 H2 5T0 sing 28 n n C17 H3 5T0 sing 29 n n C16 H4 5T0 sing 30 n n C8 H5 5T0 sing 31 n n C8 H6 5T0 sing 32 n n C10 H7 5T0 sing 33 n n C10 H8 5T0 sing 34 n n C9 H9 5T0 sing 35 n n C9 H10 5T0 sing 36 n n C11 H11 5T0 sing 37 n n C11 H12 5T0 sing 38 n n C1 H13 5T0 sing 39 n n C2 H14 5T0 sing 40 n n C3 H15 5T0 sing 41 n n C5 H16 5T0 sing 42 n n C5 H17 5T0 sing 43 n n C6 H18 5T0 sing 44 n n C6 H19 5T0 sing 45 n n C7 H20 5T0 sing 46 n n C H21 5T0 sing 47 n n C18 H22 5T0 sing 48 n n C18 H23 5T0 sing 49 n n N2 H24 5T0 sing 50 n n C19 H26 5T0 sing 51 n n C19 H27 5T0 sing 52 n n C19 H28 5T0 sing 53 n n C1 H29 5T0 sing 54 n n C2 H30 5T0 sing 55 n n C3 H31 5T0 sing 56 n n C H32 5T0 sing 57 n n # _atom_sites.entry_id 5EYR _atom_sites.fract_transf_matrix[1][1] 0.008272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5T0 A 1 301 1 5T0 116 . C 3 HOH A 1 401 7 HOH HOH . C 3 HOH A 2 402 20 HOH HOH . C 3 HOH A 3 403 5 HOH HOH . C 3 HOH A 4 404 2 HOH HOH . C 3 HOH A 5 405 11 HOH HOH . C 3 HOH A 6 406 19 HOH HOH . C 3 HOH A 7 407 66 HOH HOH . C 3 HOH A 8 408 152 HOH HOH . C 3 HOH A 9 409 141 HOH HOH . C 3 HOH A 10 410 130 HOH HOH . C 3 HOH A 11 411 30 HOH HOH . C 3 HOH A 12 412 87 HOH HOH . C 3 HOH A 13 413 153 HOH HOH . C 3 HOH A 14 414 139 HOH HOH . C 3 HOH A 15 415 155 HOH HOH . C 3 HOH A 16 416 4 HOH HOH . C 3 HOH A 17 417 118 HOH HOH . C 3 HOH A 18 418 15 HOH HOH . C 3 HOH A 19 419 57 HOH HOH . C 3 HOH A 20 420 17 HOH HOH . C 3 HOH A 21 421 50 HOH HOH . C 3 HOH A 22 422 86 HOH HOH . C 3 HOH A 23 423 163 HOH HOH . C 3 HOH A 24 424 161 HOH HOH . C 3 HOH A 25 425 78 HOH HOH . C 3 HOH A 26 426 52 HOH HOH . C 3 HOH A 27 427 124 HOH HOH . C 3 HOH A 28 428 80 HOH HOH . C 3 HOH A 29 429 147 HOH HOH . C 3 HOH A 30 430 119 HOH HOH . C 3 HOH A 31 431 55 HOH HOH . C 3 HOH A 32 432 132 HOH HOH . C 3 HOH A 33 433 117 HOH HOH . C 3 HOH A 34 434 146 HOH HOH . C 3 HOH A 35 435 18 HOH HOH . C 3 HOH A 36 436 96 HOH HOH . C 3 HOH A 37 437 148 HOH HOH . C 3 HOH A 38 438 14 HOH HOH . C 3 HOH A 39 439 103 HOH HOH . C 3 HOH A 40 440 34 HOH HOH . C 3 HOH A 41 441 9 HOH HOH . C 3 HOH A 42 442 111 HOH HOH . C 3 HOH A 43 443 84 HOH HOH . C 3 HOH A 44 444 35 HOH HOH . C 3 HOH A 45 445 1 HOH HOH . C 3 HOH A 46 446 75 HOH HOH . C 3 HOH A 47 447 48 HOH HOH . C 3 HOH A 48 448 29 HOH HOH . C 3 HOH A 49 449 40 HOH HOH . C 3 HOH A 50 450 37 HOH HOH . C 3 HOH A 51 451 8 HOH HOH . C 3 HOH A 52 452 6 HOH HOH . C 3 HOH A 53 453 12 HOH HOH . C 3 HOH A 54 454 28 HOH HOH . C 3 HOH A 55 455 61 HOH HOH . C 3 HOH A 56 456 23 HOH HOH . C 3 HOH A 57 457 24 HOH HOH . C 3 HOH A 58 458 31 HOH HOH . C 3 HOH A 59 459 154 HOH HOH . C 3 HOH A 60 460 137 HOH HOH . C 3 HOH A 61 461 116 HOH HOH . C 3 HOH A 62 462 16 HOH HOH . C 3 HOH A 63 463 65 HOH HOH . C 3 HOH A 64 464 51 HOH HOH . C 3 HOH A 65 465 83 HOH HOH . C 3 HOH A 66 466 165 HOH HOH . C 3 HOH A 67 467 112 HOH HOH . C 3 HOH A 68 468 43 HOH HOH . C 3 HOH A 69 469 10 HOH HOH . C 3 HOH A 70 470 169 HOH HOH . C 3 HOH A 71 471 110 HOH HOH . C 3 HOH A 72 472 95 HOH HOH . C 3 HOH A 73 473 26 HOH HOH . C 3 HOH A 74 474 69 HOH HOH . C 3 HOH A 75 475 39 HOH HOH . C 3 HOH A 76 476 3 HOH HOH . C 3 HOH A 77 477 77 HOH HOH . C 3 HOH A 78 478 47 HOH HOH . C 3 HOH A 79 479 22 HOH HOH . C 3 HOH A 80 480 134 HOH HOH . C 3 HOH A 81 481 157 HOH HOH . C 3 HOH A 82 482 13 HOH HOH . C 3 HOH A 83 483 74 HOH HOH . C 3 HOH A 84 484 63 HOH HOH . C 3 HOH A 85 485 106 HOH HOH . C 3 HOH A 86 486 136 HOH HOH . C 3 HOH A 87 487 64 HOH HOH . C 3 HOH A 88 488 127 HOH HOH . C 3 HOH A 89 489 131 HOH HOH . C 3 HOH A 90 490 98 HOH HOH . C 3 HOH A 91 491 21 HOH HOH . C 3 HOH A 92 492 72 HOH HOH . C 3 HOH A 93 493 71 HOH HOH . C 3 HOH A 94 494 89 HOH HOH . C 3 HOH A 95 495 97 HOH HOH . C 3 HOH A 96 496 60 HOH HOH . C 3 HOH A 97 497 108 HOH HOH . C 3 HOH A 98 498 58 HOH HOH . C 3 HOH A 99 499 81 HOH HOH . C 3 HOH A 100 500 109 HOH HOH . C 3 HOH A 101 501 107 HOH HOH . C 3 HOH A 102 502 149 HOH HOH . C 3 HOH A 103 503 32 HOH HOH . C 3 HOH A 104 504 45 HOH HOH . C 3 HOH A 105 505 162 HOH HOH . C 3 HOH A 106 506 94 HOH HOH . C 3 HOH A 107 507 166 HOH HOH . C 3 HOH A 108 508 143 HOH HOH . C 3 HOH A 109 509 53 HOH HOH . C 3 HOH A 110 510 25 HOH HOH . C 3 HOH A 111 511 41 HOH HOH . C 3 HOH A 112 512 168 HOH HOH . C 3 HOH A 113 513 113 HOH HOH . C 3 HOH A 114 514 59 HOH HOH . C 3 HOH A 115 515 158 HOH HOH . C 3 HOH A 116 516 120 HOH HOH . C 3 HOH A 117 517 104 HOH HOH . C 3 HOH A 118 518 156 HOH HOH . C 3 HOH A 119 519 92 HOH HOH . C 3 HOH A 120 520 170 HOH HOH . C 3 HOH A 121 521 73 HOH HOH . C 3 HOH A 122 522 159 HOH HOH . C 3 HOH A 123 523 36 HOH HOH . C 3 HOH A 124 524 99 HOH HOH . C 3 HOH A 125 525 135 HOH HOH . C 3 HOH A 126 526 42 HOH HOH . C 3 HOH A 127 527 160 HOH HOH . C 3 HOH A 128 528 125 HOH HOH . C 3 HOH A 129 529 128 HOH HOH . C 3 HOH A 130 530 27 HOH HOH . C 3 HOH A 131 531 102 HOH HOH . C 3 HOH A 132 532 79 HOH HOH . C 3 HOH A 133 533 68 HOH HOH . C 3 HOH A 134 534 90 HOH HOH . C 3 HOH A 135 535 88 HOH HOH . C 3 HOH A 136 536 54 HOH HOH . C 3 HOH A 137 537 167 HOH HOH . C 3 HOH A 138 538 140 HOH HOH . C 3 HOH A 139 539 82 HOH HOH . C 3 HOH A 140 540 144 HOH HOH . C 3 HOH A 141 541 123 HOH HOH . C 3 HOH A 142 542 44 HOH HOH . C 3 HOH A 143 543 49 HOH HOH . C 3 HOH A 144 544 76 HOH HOH . C 3 HOH A 145 545 38 HOH HOH . C 3 HOH A 146 546 67 HOH HOH . C 3 HOH A 147 547 126 HOH HOH . C 3 HOH A 148 548 46 HOH HOH . C 3 HOH A 149 549 115 HOH HOH . C 3 HOH A 150 550 91 HOH HOH . C 3 HOH A 151 551 145 HOH HOH . C 3 HOH A 152 552 105 HOH HOH . C 3 HOH A 153 553 151 HOH HOH . C 3 HOH A 154 554 85 HOH HOH . C 3 HOH A 155 555 62 HOH HOH . C 3 HOH A 156 556 100 HOH HOH . C 3 HOH A 157 557 164 HOH HOH . C 3 HOH A 158 558 138 HOH HOH . C 3 HOH A 159 559 56 HOH HOH . C 3 HOH A 160 560 150 HOH HOH . C 3 HOH A 161 561 129 HOH HOH . C 3 HOH A 162 562 114 HOH HOH . C 3 HOH A 163 563 70 HOH HOH . C 3 HOH A 164 564 93 HOH HOH . C 3 HOH A 165 565 142 HOH HOH . C 3 HOH A 166 566 33 HOH HOH . C 3 HOH A 167 567 122 HOH HOH . C 3 HOH A 168 568 133 HOH HOH . C 3 HOH A 169 569 121 HOH HOH . C 3 HOH A 170 570 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 5T0 . . . B 2 3.911 28.534 4.246 1 44.66 ? C14 5T0 301 A 1 HETATM 2 C C13 5T0 . . . B 2 5.279 28.382 4 1 40.41 ? C13 5T0 301 A 1 HETATM 3 C C15 5T0 . . . B 2 3.113 27.401 4.434 1 45.98 ? C15 5T0 301 A 1 HETATM 4 C C17 5T0 . . . B 2 5.061 25.988 4.143 1 41.16 ? C17 5T0 301 A 1 HETATM 5 C C16 5T0 . . . B 2 3.69 26.125 4.387 1 43.65 ? C16 5T0 301 A 1 HETATM 6 C C8 5T0 . . . B 2 9.108 26.048 2.328 1 29.56 ? C8 5T0 301 A 1 HETATM 7 C C10 5T0 . . . B 2 8.212 27.821 4.509 1 30.93 ? C10 5T0 301 A 1 HETATM 8 C C9 5T0 . . . B 2 7.726 25.827 2.942 1 31.67 ? C9 5T0 301 A 1 HETATM 9 N N1 5T0 . . . B 2 7.27 26.965 3.762 1 34.01 ? N1 5T0 301 A 1 HETATM 10 C C12 5T0 . . . B 2 5.874 27.118 3.945 1 37.56 ? C12 5T0 301 A 1 HETATM 11 C C11 5T0 . . . B 2 9.436 28.142 3.65 1 30.9 ? C11 5T0 301 A 1 HETATM 12 C C1 5T0 . . . B 2 16.359 29.745 2.815 1 28.65 ? C1 5T0 301 A 1 HETATM 13 C C2 5T0 . . . B 2 16.608 29.907 1.324 1 29.44 ? C2 5T0 301 A 1 HETATM 14 C C3 5T0 . . . B 2 15.537 29.102 0.617 1 24.56 ? C3 5T0 301 A 1 HETATM 15 C C4 5T0 . . . B 2 13.46 28.016 1.394 1 27.08 ? C4 5T0 301 A 1 HETATM 16 C C5 5T0 . . . B 2 12.468 27.805 2.527 1 28.43 ? C5 5T0 301 A 1 HETATM 17 C C6 5T0 . . . B 2 11.16 27.176 2.054 1 28.84 ? C6 5T0 301 A 1 HETATM 18 C C7 5T0 . . . B 2 10.116 26.867 3.124 1 27.83 ? C7 5T0 301 A 1 HETATM 19 O O 5T0 . . . B 2 13.205 27.627 0.243 1 25.82 ? O 5T0 301 A 1 HETATM 20 N N 5T0 . . . B 2 14.602 28.679 1.668 1 24.87 ? N 5T0 301 A 1 HETATM 21 C C 5T0 . . . B 2 15.014 29.071 3.019 1 26.87 ? C 5T0 301 A 1 HETATM 22 C C18 5T0 . . . B 2 1.627 27.56 4.665 1 48.82 ? C18 5T0 301 A 1 HETATM 23 N N2 5T0 . . . B 2 1.317 27.486 6.078 1 52.15 ? N2 5T0 301 A 1 HETATM 24 C C19 5T0 . . . B 2 0.922 26.22 6.675 1 54.34 ? C19 5T0 301 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #