data_5EYS # _model_server_result.job_id zm1dxcJTLPirUGdSinpXFQ _model_server_result.datetime_utc '2024-11-01 08:22:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5EYS # _exptl.entry_id 5EYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EYS _cell.length_a 88.784 _cell.length_b 88.784 _cell.length_c 114.31 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.108 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5EYS _atom_sites.fract_transf_matrix[1][1] 0.011263 _atom_sites.fract_transf_matrix[1][2] 0.006503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 SO4 A 1 202 202 SO4 SO4 . D 4 HOH A 1 301 396 HOH HOH . D 4 HOH A 2 302 304 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 304 397 HOH HOH . D 4 HOH A 5 305 310 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 312 HOH HOH . D 4 HOH A 8 308 309 HOH HOH . D 4 HOH A 9 309 337 HOH HOH . D 4 HOH A 10 310 408 HOH HOH . D 4 HOH A 11 311 316 HOH HOH . D 4 HOH A 12 312 342 HOH HOH . D 4 HOH A 13 313 307 HOH HOH . D 4 HOH A 14 314 365 HOH HOH . D 4 HOH A 15 315 324 HOH HOH . D 4 HOH A 16 316 403 HOH HOH . D 4 HOH A 17 317 329 HOH HOH . D 4 HOH A 18 318 317 HOH HOH . D 4 HOH A 19 319 338 HOH HOH . D 4 HOH A 20 320 358 HOH HOH . D 4 HOH A 21 321 318 HOH HOH . D 4 HOH A 22 322 343 HOH HOH . D 4 HOH A 23 323 330 HOH HOH . D 4 HOH A 24 324 305 HOH HOH . D 4 HOH A 25 325 315 HOH HOH . D 4 HOH A 26 326 406 HOH HOH . D 4 HOH A 27 327 323 HOH HOH . D 4 HOH A 28 328 313 HOH HOH . D 4 HOH A 29 329 331 HOH HOH . D 4 HOH A 30 330 411 HOH HOH . D 4 HOH A 31 331 319 HOH HOH . D 4 HOH A 32 332 326 HOH HOH . D 4 HOH A 33 333 327 HOH HOH . D 4 HOH A 34 334 407 HOH HOH . D 4 HOH A 35 335 332 HOH HOH . D 4 HOH A 36 336 336 HOH HOH . D 4 HOH A 37 337 328 HOH HOH . D 4 HOH A 38 338 333 HOH HOH . D 4 HOH A 39 339 321 HOH HOH . D 4 HOH A 40 340 334 HOH HOH . D 4 HOH A 41 341 381 HOH HOH . D 4 HOH A 42 342 322 HOH HOH . D 4 HOH A 43 343 311 HOH HOH . D 4 HOH A 44 344 409 HOH HOH . D 4 HOH A 45 345 348 HOH HOH . D 4 HOH A 46 346 340 HOH HOH . D 4 HOH A 47 347 393 HOH HOH . D 4 HOH A 48 348 346 HOH HOH . D 4 HOH A 49 349 351 HOH HOH . D 4 HOH A 50 350 320 HOH HOH . D 4 HOH A 51 351 325 HOH HOH . D 4 HOH A 52 352 359 HOH HOH . D 4 HOH A 53 353 344 HOH HOH . D 4 HOH A 54 354 339 HOH HOH . D 4 HOH A 55 355 386 HOH HOH . D 4 HOH A 56 356 335 HOH HOH . D 4 HOH A 57 357 383 HOH HOH . D 4 HOH A 58 358 353 HOH HOH . D 4 HOH A 59 359 384 HOH HOH . D 4 HOH A 60 360 360 HOH HOH . D 4 HOH A 61 361 345 HOH HOH . D 4 HOH A 62 362 404 HOH HOH . D 4 HOH A 63 363 302 HOH HOH . D 4 HOH A 64 364 341 HOH HOH . D 4 HOH A 65 365 401 HOH HOH . D 4 HOH A 66 366 349 HOH HOH . D 4 HOH A 67 367 380 HOH HOH . D 4 HOH A 68 368 377 HOH HOH . D 4 HOH A 69 369 352 HOH HOH . D 4 HOH A 70 370 361 HOH HOH . D 4 HOH A 71 371 347 HOH HOH . D 4 HOH A 72 372 362 HOH HOH . D 4 HOH A 73 373 382 HOH HOH . D 4 HOH A 74 374 356 HOH HOH . D 4 HOH A 75 375 357 HOH HOH . D 4 HOH A 76 376 388 HOH HOH . D 4 HOH A 77 377 391 HOH HOH . D 4 HOH A 78 378 371 HOH HOH . D 4 HOH A 79 379 363 HOH HOH . D 4 HOH A 80 380 398 HOH HOH . D 4 HOH A 81 381 314 HOH HOH . D 4 HOH A 82 382 368 HOH HOH . D 4 HOH A 83 383 390 HOH HOH . D 4 HOH A 84 384 366 HOH HOH . D 4 HOH A 85 385 399 HOH HOH . D 4 HOH A 86 386 367 HOH HOH . D 4 HOH A 87 387 385 HOH HOH . D 4 HOH A 88 388 370 HOH HOH . D 4 HOH A 89 389 376 HOH HOH . D 4 HOH A 90 390 395 HOH HOH . D 4 HOH A 91 391 402 HOH HOH . D 4 HOH A 92 392 372 HOH HOH . D 4 HOH A 93 393 387 HOH HOH . D 4 HOH A 94 394 412 HOH HOH . D 4 HOH A 95 395 378 HOH HOH . D 4 HOH A 96 396 375 HOH HOH . D 4 HOH A 97 397 392 HOH HOH . D 4 HOH A 98 398 405 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . A . B 2 41.026 -4.98 1.754 1 17.06 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . A . B 2 42.538 -9.177 3.497 1 15.41 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . A . B 2 38.045 -10.891 2.844 1 17.15 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . A . B 2 36.465 -6.554 1.588 1 15.83 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . A . B 2 41.804 -5.976 2.276 1 16.24 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . A . B 2 43.156 -5.819 2.595 1 17.73 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . A . B 2 43.604 -6.99 3.118 1 17.66 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . A . B 2 42.511 -7.862 3.097 1 16.32 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . A . B 2 45.01 -7.301 3.582 1 19.92 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . A . B 2 44.01 -4.597 2.439 1 18.75 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . A . B 2 44.213 -3.888 3.762 1 19.55 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . A . B 2 42.933 -3.284 4.27 1 22.23 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . A . B 2 42.258 -2.454 3.598 1 22.25 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . A . B 2 42.502 -3.608 5.382 1 20.37 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . A . B 2 41.424 -10.021 3.459 1 16.16 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . A . B 2 41.46 -11.427 3.783 1 17.74 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . A . B 2 40.186 -11.911 3.574 1 19.19 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . A . B 2 39.368 -10.784 3.12 1 16.52 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . A . B 2 42.675 -12.182 4.249 1 21.32 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . A . B 2 39.603 -13.256 3.689 1 23.33 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . A . B 2 40.322 -14.338 3.658 1 31.12 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . A . B 2 37.208 -9.88 2.46 1 17.76 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . A . B 2 35.863 -10.031 2.148 1 19.58 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . A . B 2 35.424 -8.773 1.776 1 17.84 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . A . B 2 36.498 -7.883 1.903 1 16.21 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . A . B 2 35.044 -11.314 2.194 1 21.42 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . A . B 2 34.097 -8.379 1.317 1 20.83 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . A . B 2 33.174 -9.177 0.872 1 29.82 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . A . B 2 37.638 -5.787 1.554 1 14.95 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . A . B 2 37.591 -4.383 1.105 1 16.81 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . A . B 2 38.85 -3.924 1.102 1 16.4 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . A . B 2 39.665 -5.076 1.576 1 16.82 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . A . B 2 36.311 -3.685 0.695 1 17.75 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . A . B 2 39.325 -2.524 0.697 1 19.22 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . A . B 2 39.752 -2.715 -0.735 1 22.83 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . A . B 2 40.221 -1.452 -1.465 1 26.21 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . A . B 2 41.426 -1.178 -1.465 1 30.45 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . A . B 2 39.366 -0.772 -1.998 1 25.63 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . A . B 2 41.359 -7.259 2.592 1 15.32 ? NA HEM 201 A 1 HETATM 40 N NB HEM . A . B 2 40.198 -9.754 3.096 1 15.42 ? NB HEM 201 A 1 HETATM 41 N NC HEM . A . B 2 37.617 -8.575 2.273 1 16.34 ? NC HEM 201 A 1 HETATM 42 N ND HEM . A . B 2 38.873 -6.136 1.826 1 15.61 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . A . B 2 39.519 -7.901 2.451 1 15.5 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #