data_5EZ5 # _model_server_result.job_id 5eh0DULYbiOQRGoeqD8UAw _model_server_result.datetime_utc '2024-10-12 15:23:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ez5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 5EZ5 # _exptl.entry_id 5EZ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EZ5 _cell.length_a 74.111 _cell.length_b 74.111 _cell.length_c 149.444 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,C,D,G 2 1 B,E,F,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 74.111 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 25 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A OG1 THR 36 A THR 43 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc3 C MG MG . A MG 201 1_555 D O1B GTP . A GTP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 C MG MG . A MG 201 1_555 D O1G GTP . A GTP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc5 C MG MG . A MG 201 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc6 B OG SER 18 B SER 25 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc7 B OG1 THR 36 B THR 43 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc8 E MG MG . B MG 201 1_555 F O3G GTP . B GTP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc9 E MG MG . B MG 201 1_555 F O2B GTP . B GTP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc10 E MG MG . B MG 201 1_555 H O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 5EZ5 _atom_sites.fract_transf_matrix[1][1] 0.013493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 201 MG MG . D 3 GTP A 1 202 1 GTP GTP . E 2 MG B 1 201 201 MG MG . F 3 GTP B 1 202 1 GTP GTP . G 4 HOH A 1 301 2 HOH HOH . G 4 HOH A 2 302 10 HOH HOH . G 4 HOH A 3 303 8 HOH HOH . G 4 HOH A 4 304 1 HOH HOH . G 4 HOH A 5 305 9 HOH HOH . G 4 HOH A 6 306 7 HOH HOH . H 4 HOH B 1 301 4 HOH HOH . H 4 HOH B 2 302 6 HOH HOH . H 4 HOH B 3 303 5 HOH HOH . H 4 HOH B 4 304 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 3 27.059 20.405 7.553 1 32.07 ? PG GTP 202 B 1 HETATM 2 O O1G GTP . . . F 3 26.665 20.783 6.165 1 32.36 ? O1G GTP 202 B 1 HETATM 3 O O2G GTP . . . F 3 27.24 18.887 7.589 1 29.65 ? O2G GTP 202 B 1 HETATM 4 O O3G GTP . . . F 3 28.232 21.153 8.055 1 26.01 ? O3G GTP 202 B 1 HETATM 5 O O3B GTP . . . F 3 25.631 20.8 8.643 1 20.06 ? O3B GTP 202 B 1 HETATM 6 P PB GTP . . . F 3 25.456 21.01 10.311 1 26.68 ? PB GTP 202 B 1 HETATM 7 O O1B GTP . . . F 3 25.022 19.574 10.397 1 25.41 ? O1B GTP 202 B 1 HETATM 8 O O2B GTP . . . F 3 26.86 21.489 10.42 1 20.28 ? O2B GTP 202 B 1 HETATM 9 O O3A GTP . . . F 3 24.251 22.141 10.22 1 24.8 ? O3A GTP 202 B 1 HETATM 10 P PA GTP . . . F 3 24.371 23.713 10.889 1 28 ? PA GTP 202 B 1 HETATM 11 O O1A GTP . . . F 3 25.405 23.968 9.875 1 24.37 ? O1A GTP 202 B 1 HETATM 12 O O2A GTP . . . F 3 24.668 23.373 12.285 1 25.47 ? O2A GTP 202 B 1 HETATM 13 O O5' GTP . . . F 3 22.838 23.925 10.587 1 30.79 ? O5' GTP 202 B 1 HETATM 14 C C5' GTP . . . F 3 22.355 24.289 9.282 1 34.72 ? C5' GTP 202 B 1 HETATM 15 C C4' GTP . . . F 3 21.137 25.213 9.414 1 36.03 ? C4' GTP 202 B 1 HETATM 16 O O4' GTP . . . F 3 20.246 24.653 10.391 1 35.49 ? O4' GTP 202 B 1 HETATM 17 C C3' GTP . . . F 3 21.576 26.605 9.95 1 37.12 ? C3' GTP 202 B 1 HETATM 18 O O3' GTP . . . F 3 20.712 27.64 9.403 1 37.42 ? O3' GTP 202 B 1 HETATM 19 C C2' GTP . . . F 3 21.31 26.443 11.402 1 37.48 ? C2' GTP 202 B 1 HETATM 20 O O2' GTP . . . F 3 21.134 27.719 12.077 1 36.39 ? O2' GTP 202 B 1 HETATM 21 C C1' GTP . . . F 3 20.032 25.634 11.411 1 37.35 ? C1' GTP 202 B 1 HETATM 22 N N9 GTP . . . F 3 19.84 25.094 12.781 1 43.02 ? N9 GTP 202 B 1 HETATM 23 C C8 GTP . . . F 3 20.78 24.5 13.525 1 44.31 ? C8 GTP 202 B 1 HETATM 24 N N7 GTP . . . F 3 20.25 24.211 14.714 1 45.84 ? N7 GTP 202 B 1 HETATM 25 C C5 GTP . . . F 3 18.981 24.613 14.722 1 45.84 ? C5 GTP 202 B 1 HETATM 26 C C6 GTP . . . F 3 18.028 24.534 15.666 1 45.42 ? C6 GTP 202 B 1 HETATM 27 O O6 GTP . . . F 3 18.226 24.031 16.771 1 42.54 ? O6 GTP 202 B 1 HETATM 28 N N1 GTP . . . F 3 16.766 25.07 15.399 1 47.01 ? N1 GTP 202 B 1 HETATM 29 C C2 GTP . . . F 3 16.527 25.645 14.149 1 47.83 ? C2 GTP 202 B 1 HETATM 30 N N2 GTP . . . F 3 15.32 26.137 13.897 1 47.65 ? N2 GTP 202 B 1 HETATM 31 N N3 GTP . . . F 3 17.514 25.689 13.224 1 46.59 ? N3 GTP 202 B 1 HETATM 32 C C4 GTP . . . F 3 18.73 25.18 13.518 1 45.58 ? C4 GTP 202 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #