data_5EZ7 # _model_server_result.job_id OgIJ_G4da5iobC5OdtXV1Q _model_server_result.datetime_utc '2024-11-05 00:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ez7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5EZ7 # _exptl.entry_id 5EZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.4 _cell.angle_gamma 90 _cell.entry_id 5EZ7 _cell.length_a 37.89 _cell.length_b 79.83 _cell.length_c 63.23 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id HG _struct_conn.ptnr1_label_comp_id HG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HG _struct_conn.ptnr1_auth_seq_id 402 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 538 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.859 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5EZ7 _atom_sites.fract_transf_matrix[1][1] 0.026392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006776 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 401 1 FAD FAD . C 3 HG A 1 402 1 HG HG . D 3 HG A 1 403 2 HG HG . E 4 HOH A 1 501 16 HOH HOH . E 4 HOH A 2 502 1 HOH HOH . E 4 HOH A 3 503 28 HOH HOH . E 4 HOH A 4 504 2 HOH HOH . E 4 HOH A 5 505 8 HOH HOH . E 4 HOH A 6 506 18 HOH HOH . E 4 HOH A 7 507 15 HOH HOH . E 4 HOH A 8 508 40 HOH HOH . E 4 HOH A 9 509 29 HOH HOH . E 4 HOH A 10 510 31 HOH HOH . E 4 HOH A 11 511 37 HOH HOH . E 4 HOH A 12 512 11 HOH HOH . E 4 HOH A 13 513 12 HOH HOH . E 4 HOH A 14 514 6 HOH HOH . E 4 HOH A 15 515 14 HOH HOH . E 4 HOH A 16 516 10 HOH HOH . E 4 HOH A 17 517 39 HOH HOH . E 4 HOH A 18 518 21 HOH HOH . E 4 HOH A 19 519 19 HOH HOH . E 4 HOH A 20 520 5 HOH HOH . E 4 HOH A 21 521 23 HOH HOH . E 4 HOH A 22 522 25 HOH HOH . E 4 HOH A 23 523 9 HOH HOH . E 4 HOH A 24 524 3 HOH HOH . E 4 HOH A 25 525 30 HOH HOH . E 4 HOH A 26 526 41 HOH HOH . E 4 HOH A 27 527 32 HOH HOH . E 4 HOH A 28 528 7 HOH HOH . E 4 HOH A 29 529 17 HOH HOH . E 4 HOH A 30 530 33 HOH HOH . E 4 HOH A 31 531 20 HOH HOH . E 4 HOH A 32 532 22 HOH HOH . E 4 HOH A 33 533 38 HOH HOH . E 4 HOH A 34 534 13 HOH HOH . E 4 HOH A 35 535 35 HOH HOH . E 4 HOH A 36 536 34 HOH HOH . E 4 HOH A 37 537 4 HOH HOH . E 4 HOH A 38 538 27 HOH HOH . E 4 HOH A 39 539 36 HOH HOH . E 4 HOH A 40 540 24 HOH HOH . E 4 HOH A 41 541 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 34.212 -9.916 11.993 1 21.83 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . B 2 35.162 -9.001 11.292 1 22.23 ? O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . B 2 33.712 -11.163 11.319 1 22.92 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . B 2 34.887 -10.289 13.379 1 22 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . B 2 34.395 -11.32 14.212 1 21.75 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . B 2 35.589 -11.825 14.994 1 22 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . B 2 35.139 -12.741 16.006 1 22.11 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . B 2 36.588 -12.552 14.089 1 21.47 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . B 2 37.891 -11.975 14.198 1 20.71 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . B 2 36.542 -13.981 14.597 1 21.75 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . B 2 37.776 -14.689 14.507 1 21.59 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . B 2 36.064 -13.808 16.041 1 22.29 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . B 2 35.381 -14.993 16.574 1 23.63 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . B 2 34.466 -15.744 15.937 1 23.09 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . B 2 34.065 -16.751 16.732 1 22.98 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . B 2 34.718 -16.644 17.895 1 22.53 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . B 2 34.748 -17.406 19.151 1 22.02 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . B 2 33.953 -18.479 19.278 1 21.48 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . B 2 35.556 -16.985 20.138 1 21.89 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . B 2 36.339 -15.901 19.987 1 23.02 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . B 2 36.368 -15.158 18.861 1 23.01 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . B 2 35.591 -15.485 17.799 1 23.21 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . B 2 31.334 -2.568 5.31 1 25.77 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . B 2 31.572 -1.273 5.012 1 27.75 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . B 2 31.166 -0.385 5.799 1 27.67 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . B 2 32.231 -0.901 3.901 1 28.72 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . B 2 32.689 -1.782 3.016 1 27.76 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . B 2 33.308 -1.414 1.998 1 30.67 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . B 2 32.47 -3.21 3.271 1 26.84 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . B 2 32.908 -4.148 2.41 1 25.45 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . B 2 32.712 -5.455 2.661 1 25.9 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . B 2 33.195 -6.391 1.755 1 26.7 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . B 2 33.019 -7.742 1.976 1 27.46 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . B 2 33.565 -8.733 0.993 1 28.68 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . B 2 32.328 -8.197 3.209 1 27.98 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . B 2 32.115 -9.664 3.516 1 29.21 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . B 2 31.839 -7.262 4.103 1 26.84 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . B 2 31.998 -5.895 3.887 1 26.41 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . B 2 31.515 -4.909 4.793 1 25.88 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . B 2 31.751 -3.558 4.514 1 25.92 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . B 2 30.832 -5.267 6.025 1 25.48 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . B 2 31.881 -5.444 7.109 1 24.66 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . B 2 33.009 -6.191 6.634 1 25.37 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . B 2 31.281 -6.105 8.342 1 24.13 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . B 2 30.013 -5.481 8.629 1 24.08 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . B 2 32.206 -5.953 9.547 1 22.82 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . B 2 33.579 -6.094 9.181 1 23.27 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . B 2 31.899 -6.985 10.615 1 22.3 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . B 2 32.683 -6.698 11.781 1 20.74 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . B 2 32.627 -7.71 13.016 1 20.3 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . B 2 33.746 -7.363 13.963 1 21.17 ? O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . B 2 31.218 -7.711 13.489 1 20.45 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . B 2 32.841 -9.139 12.32 1 20.67 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 53 #