data_5EZA # _model_server_result.job_id e1mFkAFNNjiKfFKZXe3obQ _model_server_result.datetime_utc '2024-10-10 12:21:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 5EZA # _exptl.entry_id 5EZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.98 _cell.angle_gamma 90 _cell.entry_id 5EZA _cell.length_a 62.24 _cell.length_b 61.37 _cell.length_c 69.415 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C ACE 1 C ACE 1 1_555 C N GLY 2 C GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 D C ACE 1 D ACE 1 1_555 D N GLY 2 D GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 E C ACE 1 E ACE 1 1_555 E N GLY 2 E GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 F C ACE 1 F ACE 1 1_555 F N GLY 2 F GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 G C ACE 1 G ACE 1 1_555 G N GLY 2 G GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 85 n n C1 C2 GOL sing 86 n n C1 H11 GOL sing 87 n n C1 H12 GOL sing 88 n n O1 HO1 GOL sing 89 n n C2 O2 GOL sing 90 n n C2 C3 GOL sing 91 n n C2 H2 GOL sing 92 n n O2 HO2 GOL sing 93 n n C3 O3 GOL sing 94 n n C3 H31 GOL sing 95 n n C3 H32 GOL sing 96 n n O3 HO3 GOL sing 97 n n # _atom_sites.entry_id 5EZA _atom_sites.fract_transf_matrix[1][1] 0.016067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005842 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 GOL F 1 101 1 GOL GOL . I 3 HOH A 1 101 31 HOH HOH . I 3 HOH A 2 102 54 HOH HOH . I 3 HOH A 3 103 145 HOH HOH . I 3 HOH A 4 104 160 HOH HOH . I 3 HOH A 5 105 158 HOH HOH . I 3 HOH A 6 106 134 HOH HOH . I 3 HOH A 7 107 33 HOH HOH . I 3 HOH A 8 108 1 HOH HOH . I 3 HOH A 9 109 19 HOH HOH . I 3 HOH A 10 110 88 HOH HOH . I 3 HOH A 11 111 94 HOH HOH . I 3 HOH A 12 112 58 HOH HOH . I 3 HOH A 13 113 136 HOH HOH . I 3 HOH A 14 114 229 HOH HOH . I 3 HOH A 15 115 164 HOH HOH . I 3 HOH A 16 116 138 HOH HOH . I 3 HOH A 17 117 157 HOH HOH . I 3 HOH A 18 118 228 HOH HOH . I 3 HOH A 19 119 177 HOH HOH . I 3 HOH A 20 120 137 HOH HOH . I 3 HOH A 21 121 196 HOH HOH . I 3 HOH A 22 122 128 HOH HOH . I 3 HOH A 23 123 236 HOH HOH . I 3 HOH A 24 124 69 HOH HOH . I 3 HOH A 25 125 73 HOH HOH . I 3 HOH A 26 126 200 HOH HOH . I 3 HOH A 27 127 194 HOH HOH . J 3 HOH B 1 101 85 HOH HOH . J 3 HOH B 2 102 71 HOH HOH . J 3 HOH B 3 103 150 HOH HOH . J 3 HOH B 4 104 202 HOH HOH . J 3 HOH B 5 105 199 HOH HOH . J 3 HOH B 6 106 50 HOH HOH . J 3 HOH B 7 107 215 HOH HOH . J 3 HOH B 8 108 86 HOH HOH . J 3 HOH B 9 109 10 HOH HOH . J 3 HOH B 10 110 149 HOH HOH . J 3 HOH B 11 111 97 HOH HOH . J 3 HOH B 12 112 38 HOH HOH . J 3 HOH B 13 113 28 HOH HOH . J 3 HOH B 14 114 262 HOH HOH . J 3 HOH B 15 115 232 HOH HOH . J 3 HOH B 16 116 123 HOH HOH . J 3 HOH B 17 117 170 HOH HOH . J 3 HOH B 18 118 167 HOH HOH . J 3 HOH B 19 119 211 HOH HOH . J 3 HOH B 20 120 213 HOH HOH . J 3 HOH B 21 121 233 HOH HOH . J 3 HOH B 22 122 212 HOH HOH . J 3 HOH B 23 123 204 HOH HOH . J 3 HOH B 24 124 179 HOH HOH . J 3 HOH B 25 125 237 HOH HOH . J 3 HOH B 26 126 162 HOH HOH . J 3 HOH B 27 127 101 HOH HOH . J 3 HOH B 28 128 102 HOH HOH . J 3 HOH B 29 129 104 HOH HOH . K 3 HOH C 1 101 186 HOH HOH . K 3 HOH C 2 102 89 HOH HOH . K 3 HOH C 3 103 22 HOH HOH . K 3 HOH C 4 104 159 HOH HOH . K 3 HOH C 5 105 131 HOH HOH . K 3 HOH C 6 106 4 HOH HOH . K 3 HOH C 7 107 18 HOH HOH . K 3 HOH C 8 108 197 HOH HOH . K 3 HOH C 9 109 75 HOH HOH . K 3 HOH C 10 110 76 HOH HOH . K 3 HOH C 11 111 17 HOH HOH . K 3 HOH C 12 112 3 HOH HOH . K 3 HOH C 13 113 55 HOH HOH . K 3 HOH C 14 114 46 HOH HOH . K 3 HOH C 15 115 36 HOH HOH . K 3 HOH C 16 116 59 HOH HOH . K 3 HOH C 17 117 27 HOH HOH . K 3 HOH C 18 118 61 HOH HOH . K 3 HOH C 19 119 72 HOH HOH . K 3 HOH C 20 120 53 HOH HOH . K 3 HOH C 21 121 219 HOH HOH . K 3 HOH C 22 122 168 HOH HOH . K 3 HOH C 23 123 227 HOH HOH . K 3 HOH C 24 124 148 HOH HOH . K 3 HOH C 25 125 188 HOH HOH . K 3 HOH C 26 126 63 HOH HOH . K 3 HOH C 27 127 87 HOH HOH . K 3 HOH C 28 128 226 HOH HOH . K 3 HOH C 29 129 6 HOH HOH . K 3 HOH C 30 130 152 HOH HOH . K 3 HOH C 31 131 103 HOH HOH . L 3 HOH D 1 101 77 HOH HOH . L 3 HOH D 2 102 221 HOH HOH . L 3 HOH D 3 103 35 HOH HOH . L 3 HOH D 4 104 90 HOH HOH . L 3 HOH D 5 105 206 HOH HOH . L 3 HOH D 6 106 24 HOH HOH . L 3 HOH D 7 107 13 HOH HOH . L 3 HOH D 8 108 79 HOH HOH . L 3 HOH D 9 109 129 HOH HOH . L 3 HOH D 10 110 7 HOH HOH . L 3 HOH D 11 111 205 HOH HOH . L 3 HOH D 12 112 184 HOH HOH . L 3 HOH D 13 113 56 HOH HOH . L 3 HOH D 14 114 238 HOH HOH . L 3 HOH D 15 115 192 HOH HOH . L 3 HOH D 16 116 16 HOH HOH . L 3 HOH D 17 117 127 HOH HOH . L 3 HOH D 18 118 180 HOH HOH . L 3 HOH D 19 119 45 HOH HOH . L 3 HOH D 20 120 191 HOH HOH . L 3 HOH D 21 121 257 HOH HOH . L 3 HOH D 22 122 178 HOH HOH . L 3 HOH D 23 123 126 HOH HOH . L 3 HOH D 24 124 147 HOH HOH . L 3 HOH D 25 125 175 HOH HOH . L 3 HOH D 26 126 242 HOH HOH . L 3 HOH D 27 127 259 HOH HOH . L 3 HOH D 28 128 239 HOH HOH . L 3 HOH D 29 129 65 HOH HOH . L 3 HOH D 30 130 218 HOH HOH . L 3 HOH D 31 131 176 HOH HOH . L 3 HOH D 32 132 125 HOH HOH . M 3 HOH E 1 101 81 HOH HOH . M 3 HOH E 2 102 220 HOH HOH . M 3 HOH E 3 103 30 HOH HOH . M 3 HOH E 4 104 230 HOH HOH . M 3 HOH E 5 105 66 HOH HOH . M 3 HOH E 6 106 64 HOH HOH . M 3 HOH E 7 107 223 HOH HOH . M 3 HOH E 8 108 34 HOH HOH . M 3 HOH E 9 109 8 HOH HOH . M 3 HOH E 10 110 29 HOH HOH . M 3 HOH E 11 111 41 HOH HOH . M 3 HOH E 12 112 21 HOH HOH . M 3 HOH E 13 113 174 HOH HOH . M 3 HOH E 14 114 5 HOH HOH . M 3 HOH E 15 115 23 HOH HOH . M 3 HOH E 16 116 32 HOH HOH . M 3 HOH E 17 117 60 HOH HOH . M 3 HOH E 18 118 247 HOH HOH . M 3 HOH E 19 119 144 HOH HOH . M 3 HOH E 20 120 169 HOH HOH . M 3 HOH E 21 121 44 HOH HOH . M 3 HOH E 22 122 42 HOH HOH . M 3 HOH E 23 123 214 HOH HOH . M 3 HOH E 24 124 154 HOH HOH . M 3 HOH E 25 125 43 HOH HOH . M 3 HOH E 26 126 80 HOH HOH . M 3 HOH E 27 127 62 HOH HOH . M 3 HOH E 28 128 70 HOH HOH . M 3 HOH E 29 129 231 HOH HOH . M 3 HOH E 30 130 248 HOH HOH . M 3 HOH E 31 131 235 HOH HOH . M 3 HOH E 32 132 234 HOH HOH . M 3 HOH E 33 133 173 HOH HOH . M 3 HOH E 34 134 216 HOH HOH . M 3 HOH E 35 135 109 HOH HOH . M 3 HOH E 36 136 217 HOH HOH . N 3 HOH F 1 201 151 HOH HOH . N 3 HOH F 2 202 207 HOH HOH . N 3 HOH F 3 203 67 HOH HOH . N 3 HOH F 4 204 91 HOH HOH . N 3 HOH F 5 205 25 HOH HOH . N 3 HOH F 6 206 113 HOH HOH . N 3 HOH F 7 207 39 HOH HOH . N 3 HOH F 8 208 250 HOH HOH . N 3 HOH F 9 209 260 HOH HOH . N 3 HOH F 10 210 26 HOH HOH . N 3 HOH F 11 211 48 HOH HOH . N 3 HOH F 12 212 14 HOH HOH . N 3 HOH F 13 213 222 HOH HOH . N 3 HOH F 14 214 243 HOH HOH . N 3 HOH F 15 215 95 HOH HOH . N 3 HOH F 16 216 2 HOH HOH . N 3 HOH F 17 217 37 HOH HOH . N 3 HOH F 18 218 256 HOH HOH . N 3 HOH F 19 219 49 HOH HOH . N 3 HOH F 20 220 182 HOH HOH . N 3 HOH F 21 221 92 HOH HOH . N 3 HOH F 22 222 110 HOH HOH . N 3 HOH F 23 223 172 HOH HOH . N 3 HOH F 24 224 165 HOH HOH . N 3 HOH F 25 225 251 HOH HOH . N 3 HOH F 26 226 114 HOH HOH . N 3 HOH F 27 227 193 HOH HOH . N 3 HOH F 28 228 258 HOH HOH . N 3 HOH F 29 229 249 HOH HOH . N 3 HOH F 30 230 130 HOH HOH . N 3 HOH F 31 231 183 HOH HOH . N 3 HOH F 32 232 142 HOH HOH . N 3 HOH F 33 233 52 HOH HOH . N 3 HOH F 34 234 210 HOH HOH . N 3 HOH F 35 235 143 HOH HOH . N 3 HOH F 36 236 111 HOH HOH . N 3 HOH F 37 237 201 HOH HOH . O 3 HOH G 1 101 84 HOH HOH . O 3 HOH G 2 102 240 HOH HOH . O 3 HOH G 3 103 261 HOH HOH . O 3 HOH G 4 104 68 HOH HOH . O 3 HOH G 5 105 112 HOH HOH . O 3 HOH G 6 106 155 HOH HOH . O 3 HOH G 7 107 9 HOH HOH . O 3 HOH G 8 108 98 HOH HOH . O 3 HOH G 9 109 254 HOH HOH . O 3 HOH G 10 110 74 HOH HOH . O 3 HOH G 11 111 15 HOH HOH . O 3 HOH G 12 112 12 HOH HOH . O 3 HOH G 13 113 20 HOH HOH . O 3 HOH G 14 114 161 HOH HOH . O 3 HOH G 15 115 99 HOH HOH . O 3 HOH G 16 116 83 HOH HOH . O 3 HOH G 17 117 166 HOH HOH . O 3 HOH G 18 118 245 HOH HOH . O 3 HOH G 19 119 246 HOH HOH . O 3 HOH G 20 120 181 HOH HOH . O 3 HOH G 21 121 141 HOH HOH . O 3 HOH G 22 122 171 HOH HOH . O 3 HOH G 23 123 208 HOH HOH . O 3 HOH G 24 124 209 HOH HOH . O 3 HOH G 25 125 252 HOH HOH . O 3 HOH G 26 126 255 HOH HOH . O 3 HOH G 27 127 241 HOH HOH . O 3 HOH G 28 128 139 HOH HOH . O 3 HOH G 29 129 224 HOH HOH . O 3 HOH G 30 130 225 HOH HOH . O 3 HOH G 31 131 140 HOH HOH . O 3 HOH G 32 132 253 HOH HOH . O 3 HOH G 33 133 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 2 -27.735 28.754 -45.847 1 34.58 ? C1 GOL 101 F 1 HETATM 2 O O1 GOL . . . H 2 -27.745 27.392 -45.491 1 29.84 ? O1 GOL 101 F 1 HETATM 3 C C2 GOL . . . H 2 -26.311 29.28 -45.792 1 39.8 ? C2 GOL 101 F 1 HETATM 4 O O2 GOL . . . H 2 -26.198 30.313 -46.746 1 33.18 ? O2 GOL 101 F 1 HETATM 5 C C3 GOL . . . H 2 -26.04 29.841 -44.399 1 49.01 ? C3 GOL 101 F 1 HETATM 6 O O3 GOL . . . H 2 -26.757 29.092 -43.438 1 52.56 ? O3 GOL 101 F 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #