data_5EZD # _model_server_result.job_id a6Hb5TREV57gt82qCeABNQ _model_server_result.datetime_utc '2024-12-02 19:24:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ezd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5EZD # _exptl.entry_id 5EZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EZD _cell.length_a 57.65 _cell.length_b 75.14 _cell.length_c 75.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 250 1_555 A SG CYS 135 A CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 94 A CYS 259 1_555 A SG CYS 118 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 110 A CYS 275 1_555 A SG CYS 131 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf4 B SG CYS 85 B CYS 250 1_555 B SG CYS 135 B CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 94 B CYS 259 1_555 B SG CYS 118 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 B SG CYS 110 B CYS 275 1_555 B SG CYS 131 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A OE1 GLU 129 A GLU 294 1_555 C K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? metalc ? metalc2 C K K . A K 401 1_555 G O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? metalc ? metalc3 C K K . A K 401 1_555 G O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc4 B OE1 GLU 129 B GLU 294 1_555 F K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc5 F K K . B K 403 1_555 H O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? metalc ? metalc6 F K K . B K 403 1_555 H O HOH . B HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc7 F K K . B K 403 1_555 H O HOH . B HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5EZD _atom_sites.fract_transf_matrix[1][1] 0.017346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 401 1 K K . D 3 ACT B 1 401 1 ACT ACT . E 3 ACT B 1 402 2 ACT ACT . F 2 K B 1 403 2 K K . G 4 HOH A 1 501 67 HOH HOH . G 4 HOH A 2 502 49 HOH HOH . G 4 HOH A 3 503 7 HOH HOH . G 4 HOH A 4 504 2 HOH HOH . G 4 HOH A 5 505 46 HOH HOH . G 4 HOH A 6 506 68 HOH HOH . G 4 HOH A 7 507 59 HOH HOH . G 4 HOH A 8 508 37 HOH HOH . G 4 HOH A 9 509 11 HOH HOH . G 4 HOH A 10 510 43 HOH HOH . G 4 HOH A 11 511 1 HOH HOH . G 4 HOH A 12 512 16 HOH HOH . G 4 HOH A 13 513 47 HOH HOH . G 4 HOH A 14 514 60 HOH HOH . G 4 HOH A 15 515 9 HOH HOH . G 4 HOH A 16 516 10 HOH HOH . G 4 HOH A 17 517 57 HOH HOH . G 4 HOH A 18 518 44 HOH HOH . G 4 HOH A 19 519 24 HOH HOH . G 4 HOH A 20 520 58 HOH HOH . G 4 HOH A 21 521 33 HOH HOH . G 4 HOH A 22 522 20 HOH HOH . G 4 HOH A 23 523 18 HOH HOH . G 4 HOH A 24 524 63 HOH HOH . G 4 HOH A 25 525 32 HOH HOH . G 4 HOH A 26 526 26 HOH HOH . G 4 HOH A 27 527 45 HOH HOH . G 4 HOH A 28 528 35 HOH HOH . G 4 HOH A 29 529 36 HOH HOH . G 4 HOH A 30 530 42 HOH HOH . H 4 HOH B 1 501 55 HOH HOH . H 4 HOH B 2 502 66 HOH HOH . H 4 HOH B 3 503 3 HOH HOH . H 4 HOH B 4 504 13 HOH HOH . H 4 HOH B 5 505 54 HOH HOH . H 4 HOH B 6 506 39 HOH HOH . H 4 HOH B 7 507 28 HOH HOH . H 4 HOH B 8 508 19 HOH HOH . H 4 HOH B 9 509 50 HOH HOH . H 4 HOH B 10 510 48 HOH HOH . H 4 HOH B 11 511 21 HOH HOH . H 4 HOH B 12 512 53 HOH HOH . H 4 HOH B 13 513 6 HOH HOH . H 4 HOH B 14 514 8 HOH HOH . H 4 HOH B 15 515 5 HOH HOH . H 4 HOH B 16 516 4 HOH HOH . H 4 HOH B 17 517 27 HOH HOH . H 4 HOH B 18 518 61 HOH HOH . H 4 HOH B 19 519 25 HOH HOH . H 4 HOH B 20 520 15 HOH HOH . H 4 HOH B 21 521 14 HOH HOH . H 4 HOH B 22 522 17 HOH HOH . H 4 HOH B 23 523 31 HOH HOH . H 4 HOH B 24 524 30 HOH HOH . H 4 HOH B 25 525 65 HOH HOH . H 4 HOH B 26 526 62 HOH HOH . H 4 HOH B 27 527 64 HOH HOH . H 4 HOH B 28 528 29 HOH HOH . H 4 HOH B 29 529 52 HOH HOH . H 4 HOH B 30 530 51 HOH HOH . H 4 HOH B 31 531 34 HOH HOH . H 4 HOH B 32 532 40 HOH HOH . H 4 HOH B 33 533 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 3 11.754 12.22 40.071 1 89.96 ? C ACT 401 B 1 HETATM 2 O O ACT . . . D 3 11.886 11.601 38.979 1 72.35 ? O ACT 401 B 1 HETATM 3 O OXT ACT . . . D 3 12.717 12.169 40.882 1 76.54 ? OXT ACT 401 B 1 HETATM 4 C CH3 ACT . . . D 3 10.502 12.986 40.4 1 94.25 ? CH3 ACT 401 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #