data_5EZE
#
_model_server_result.job_id            x_BaxDEl7AWV-29FTMJJ9Q 
_model_server_result.datetime_utc      '2024-10-10 12:16:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5eze 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":101}' 
#
_entry.id    5EZE 
#
_exptl.entry_id    5EZE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.43 
_cell.angle_gamma         90 
_cell.entry_id            5EZE 
_cell.length_a            62.45 
_cell.length_b            60.49 
_cell.length_c            68.812 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EZE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C GLU 17 A GLU 17 1_555 A N CG6 18 A CG6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 A C CG6 18 A CG6 18 1_555 A N ALA 19 A ALA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 B C GLU 17 B GLU 17 1_555 B N CG6 18 B CG6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale6 B C CG6 18 B CG6 18 1_555 B N ALA 19 B ALA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale7 C C ACE 1 C ACE 1 1_555 C N GLY 2 C GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale8 C C GLU 17 C GLU 17 1_555 C N CG6 18 C CG6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale9 C C CG6 18 C CG6 18 1_555 C N ALA 19 C ALA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale10 D C ACE 1 D ACE 1 1_555 D N GLY 2 D GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 D C GLU 17 D GLU 17 1_555 D N CG6 18 D CG6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale12 D C CG6 18 D CG6 18 1_555 D N ALA 19 D ALA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale13 E C ACE 1 E ACE 1 1_555 E N GLY 2 E GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 E C GLU 17 E GLU 17 1_555 E N CG6 18 E CG6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale15 E C CG6 18 E CG6 18 1_555 E N ALA 19 E ALA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale16 F C ACE 1 F ACE 1 1_555 F N GLY 2 F GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale17 F C GLU 17 F GLU 17 1_555 F N CG6 18 F CG6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale18 F C CG6 18 F CG6 18 1_555 F N ALA 19 F ALA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale19 G C ACE 1 G ACE 1 1_555 G N GLY 2 G GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale20 G C GLU 17 G GLU 17 1_555 G N CG6 18 G CG6 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale21 G C CG6 18 G CG6 18 1_555 G N ALA 19 G ALA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 88 n n 
C1 C2 GOL sing 89 n n 
C1 H11 GOL sing 90 n n 
C1 H12 GOL sing 91 n n 
O1 HO1 GOL sing 92 n n 
C2 O2 GOL sing 93 n n 
C2 C3 GOL sing 94 n n 
C2 H2 GOL sing 95 n n 
O2 HO2 GOL sing 96 n n 
C3 O3 GOL sing 97 n n 
C3 H31 GOL sing 98 n n 
C3 H32 GOL sing 99 n n 
O3 HO3 GOL sing 100 n n 
#
_atom_sites.entry_id                     5EZE 
_atom_sites.fract_transf_matrix[1][1]    0.016013 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006611 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016532 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015722 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 GOL A 1 101 3 GOL GOL . 
I 2 GOL C 1 101 2 GOL GOL . 
J 3 HOH A 1 201 121 HOH HOH . 
J 3 HOH A 2 202 122 HOH HOH . 
J 3 HOH A 3 203 26 HOH HOH . 
J 3 HOH A 4 204 58 HOH HOH . 
J 3 HOH A 5 205 86 HOH HOH . 
J 3 HOH A 6 206 23 HOH HOH . 
J 3 HOH A 7 207 44 HOH HOH . 
J 3 HOH A 8 208 55 HOH HOH . 
J 3 HOH A 9 209 18 HOH HOH . 
J 3 HOH A 10 210 42 HOH HOH . 
J 3 HOH A 11 211 95 HOH HOH . 
J 3 HOH A 12 212 57 HOH HOH . 
J 3 HOH A 13 213 20 HOH HOH . 
J 3 HOH A 14 214 5 HOH HOH . 
J 3 HOH A 15 215 7 HOH HOH . 
J 3 HOH A 16 216 88 HOH HOH . 
J 3 HOH A 17 217 21 HOH HOH . 
J 3 HOH A 18 218 56 HOH HOH . 
J 3 HOH A 19 219 101 HOH HOH . 
J 3 HOH A 20 220 94 HOH HOH . 
K 3 HOH B 1 101 50 HOH HOH . 
K 3 HOH B 2 102 62 HOH HOH . 
K 3 HOH B 3 103 106 HOH HOH . 
K 3 HOH B 4 104 15 HOH HOH . 
K 3 HOH B 5 105 61 HOH HOH . 
K 3 HOH B 6 106 126 HOH HOH . 
K 3 HOH B 7 107 13 HOH HOH . 
K 3 HOH B 8 108 135 HOH HOH . 
K 3 HOH B 9 109 11 HOH HOH . 
K 3 HOH B 10 110 99 HOH HOH . 
K 3 HOH B 11 111 82 HOH HOH . 
K 3 HOH B 12 112 132 HOH HOH . 
K 3 HOH B 13 113 136 HOH HOH . 
K 3 HOH B 14 114 81 HOH HOH . 
L 3 HOH C 1 201 102 HOH HOH . 
L 3 HOH C 2 202 85 HOH HOH . 
L 3 HOH C 3 203 105 HOH HOH . 
L 3 HOH C 4 204 64 HOH HOH . 
L 3 HOH C 5 205 22 HOH HOH . 
L 3 HOH C 6 206 63 HOH HOH . 
L 3 HOH C 7 207 104 HOH HOH . 
L 3 HOH C 8 208 31 HOH HOH . 
L 3 HOH C 9 209 125 HOH HOH . 
L 3 HOH C 10 210 17 HOH HOH . 
L 3 HOH C 11 211 137 HOH HOH . 
M 3 HOH D 1 101 103 HOH HOH . 
M 3 HOH D 2 102 45 HOH HOH . 
M 3 HOH D 3 103 113 HOH HOH . 
M 3 HOH D 4 104 65 HOH HOH . 
M 3 HOH D 5 105 35 HOH HOH . 
M 3 HOH D 6 106 123 HOH HOH . 
M 3 HOH D 7 107 32 HOH HOH . 
M 3 HOH D 8 108 34 HOH HOH . 
M 3 HOH D 9 109 108 HOH HOH . 
M 3 HOH D 10 110 96 HOH HOH . 
M 3 HOH D 11 111 109 HOH HOH . 
M 3 HOH D 12 112 133 HOH HOH . 
M 3 HOH D 13 113 134 HOH HOH . 
M 3 HOH D 14 114 67 HOH HOH . 
M 3 HOH D 15 115 120 HOH HOH . 
M 3 HOH D 16 116 90 HOH HOH . 
N 3 HOH E 1 101 107 HOH HOH . 
N 3 HOH E 2 102 36 HOH HOH . 
N 3 HOH E 3 103 97 HOH HOH . 
N 3 HOH E 4 104 68 HOH HOH . 
N 3 HOH E 5 105 46 HOH HOH . 
N 3 HOH E 6 106 8 HOH HOH . 
N 3 HOH E 7 107 37 HOH HOH . 
N 3 HOH E 8 108 28 HOH HOH . 
N 3 HOH E 9 109 14 HOH HOH . 
N 3 HOH E 10 110 98 HOH HOH . 
N 3 HOH E 11 111 33 HOH HOH . 
N 3 HOH E 12 112 66 HOH HOH . 
N 3 HOH E 13 113 128 HOH HOH . 
N 3 HOH E 14 114 112 HOH HOH . 
N 3 HOH E 15 115 29 HOH HOH . 
N 3 HOH E 16 116 110 HOH HOH . 
N 3 HOH E 17 117 114 HOH HOH . 
N 3 HOH E 18 118 131 HOH HOH . 
N 3 HOH E 19 119 51 HOH HOH . 
N 3 HOH E 20 120 41 HOH HOH . 
O 3 HOH F 1 101 70 HOH HOH . 
O 3 HOH F 2 102 48 HOH HOH . 
O 3 HOH F 3 103 38 HOH HOH . 
O 3 HOH F 4 104 30 HOH HOH . 
O 3 HOH F 5 105 124 HOH HOH . 
O 3 HOH F 6 106 39 HOH HOH . 
O 3 HOH F 7 107 16 HOH HOH . 
O 3 HOH F 8 108 40 HOH HOH . 
O 3 HOH F 9 109 19 HOH HOH . 
O 3 HOH F 10 110 52 HOH HOH . 
O 3 HOH F 11 111 6 HOH HOH . 
O 3 HOH F 12 112 12 HOH HOH . 
O 3 HOH F 13 113 69 HOH HOH . 
O 3 HOH F 14 114 117 HOH HOH . 
O 3 HOH F 15 115 100 HOH HOH . 
O 3 HOH F 16 116 43 HOH HOH . 
P 3 HOH G 1 101 49 HOH HOH . 
P 3 HOH G 2 102 47 HOH HOH . 
P 3 HOH G 3 103 59 HOH HOH . 
P 3 HOH G 4 104 27 HOH HOH . 
P 3 HOH G 5 105 76 HOH HOH . 
P 3 HOH G 6 106 54 HOH HOH . 
P 3 HOH G 7 107 73 HOH HOH . 
P 3 HOH G 8 108 4 HOH HOH . 
P 3 HOH G 9 109 111 HOH HOH . 
P 3 HOH G 10 110 92 HOH HOH . 
P 3 HOH G 11 111 24 HOH HOH . 
P 3 HOH G 12 112 9 HOH HOH . 
P 3 HOH G 13 113 115 HOH HOH . 
P 3 HOH G 14 114 93 HOH HOH . 
P 3 HOH G 15 115 75 HOH HOH . 
P 3 HOH G 16 116 25 HOH HOH . 
P 3 HOH G 17 117 116 HOH HOH . 
P 3 HOH G 18 118 74 HOH HOH . 
P 3 HOH G 19 119 89 HOH HOH . 
P 3 HOH G 20 120 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 2 -52.378 -2.865 -36.013 1 48.75 ? C1 GOL 101 C 1 
HETATM 2 O O1 GOL . . . I 2 -53.219 -1.83 -36.482 1 44.97 ? O1 GOL 101 C 1 
HETATM 3 C C2 GOL . . . I 2 -51.253 -3.107 -36.987 1 39.12 ? C2 GOL 101 C 1 
HETATM 4 O O2 GOL . . . I 2 -50.828 -1.845 -37.431 1 38.35 ? O2 GOL 101 C 1 
HETATM 5 C C3 GOL . . . I 2 -51.782 -3.976 -38.123 1 41.57 ? C3 GOL 101 C 1 
HETATM 6 O O3 GOL . . . I 2 -50.822 -4.215 -39.142 1 27.38 ? O3 GOL 101 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#