data_5EZH # _model_server_result.job_id nQix8jclFaMm7DygMaLCjw _model_server_result.datetime_utc '2025-01-10 12:14:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ezh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5EZH # _exptl.entry_id 5EZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(1-pyridin-2-ylpiperidin-4-yl)methyl]pyrrolidine-1-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EZH _cell.length_a 121.41 _cell.length_b 121.41 _cell.length_c 33.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C16 H24 N4 O' _chem_comp.formula_weight 288.388 _chem_comp.id 841 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(1-pyridin-2-ylpiperidin-4-yl)methyl]pyrrolidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 841 sing 1 n n C14 C13 841 sing 2 n n C15 N3 841 sing 3 n n C13 C12 841 sing 4 n n N3 C12 841 sing 5 n n N3 C11 841 sing 6 n n O C11 841 doub 7 n n C11 N2 841 sing 8 n n C9 C8 841 sing 9 n n C9 N1 841 sing 10 n n C8 C7 841 sing 11 n n N2 C10 841 sing 12 n n C7 C10 841 sing 13 n n C7 C6 841 sing 14 n n N1 C5 841 sing 15 n n N1 C3 841 sing 16 n n C5 C6 841 sing 17 n n N C3 841 doub 18 n y N C2 841 sing 19 n y C3 C4 841 sing 20 n y C2 C1 841 doub 21 n y C4 C 841 doub 22 n y C1 C 841 sing 23 n y C15 H1 841 sing 24 n n C15 H2 841 sing 25 n n C14 H3 841 sing 26 n n C14 H4 841 sing 27 n n C13 H5 841 sing 28 n n C13 H6 841 sing 29 n n C12 H7 841 sing 30 n n C12 H8 841 sing 31 n n N2 H9 841 sing 32 n n C10 H10 841 sing 33 n n C10 H11 841 sing 34 n n C7 H12 841 sing 35 n n C6 H13 841 sing 36 n n C6 H14 841 sing 37 n n C5 H15 841 sing 38 n n C5 H16 841 sing 39 n n C8 H17 841 sing 40 n n C8 H18 841 sing 41 n n C9 H19 841 sing 42 n n C9 H20 841 sing 43 n n C4 H21 841 sing 44 n n C H22 841 sing 45 n n C2 H23 841 sing 46 n n C1 H24 841 sing 47 n n # _atom_sites.entry_id 5EZH _atom_sites.fract_transf_matrix[1][1] 0.008237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 841 A 1 301 1 841 841 . C 2 841 A 1 302 1 841 841 . D 3 SO4 A 1 303 1 SO4 SO4 . E 4 HOH A 1 401 45 HOH HOH . E 4 HOH A 2 402 22 HOH HOH . E 4 HOH A 3 403 2 HOH HOH . E 4 HOH A 4 404 12 HOH HOH . E 4 HOH A 5 405 17 HOH HOH . E 4 HOH A 6 406 15 HOH HOH . E 4 HOH A 7 407 43 HOH HOH . E 4 HOH A 8 408 38 HOH HOH . E 4 HOH A 9 409 14 HOH HOH . E 4 HOH A 10 410 16 HOH HOH . E 4 HOH A 11 411 3 HOH HOH . E 4 HOH A 12 412 33 HOH HOH . E 4 HOH A 13 413 30 HOH HOH . E 4 HOH A 14 414 25 HOH HOH . E 4 HOH A 15 415 4 HOH HOH . E 4 HOH A 16 416 8 HOH HOH . E 4 HOH A 17 417 18 HOH HOH . E 4 HOH A 18 418 42 HOH HOH . E 4 HOH A 19 419 9 HOH HOH . E 4 HOH A 20 420 36 HOH HOH . E 4 HOH A 21 421 11 HOH HOH . E 4 HOH A 22 422 29 HOH HOH . E 4 HOH A 23 423 6 HOH HOH . E 4 HOH A 24 424 23 HOH HOH . E 4 HOH A 25 425 1 HOH HOH . E 4 HOH A 26 426 7 HOH HOH . E 4 HOH A 27 427 27 HOH HOH . E 4 HOH A 28 428 5 HOH HOH . E 4 HOH A 29 429 35 HOH HOH . E 4 HOH A 30 430 31 HOH HOH . E 4 HOH A 31 431 24 HOH HOH . E 4 HOH A 32 432 19 HOH HOH . E 4 HOH A 33 433 21 HOH HOH . E 4 HOH A 34 434 28 HOH HOH . E 4 HOH A 35 435 10 HOH HOH . E 4 HOH A 36 436 44 HOH HOH . E 4 HOH A 37 437 13 HOH HOH . E 4 HOH A 38 438 20 HOH HOH . E 4 HOH A 39 439 40 HOH HOH . E 4 HOH A 40 440 39 HOH HOH . E 4 HOH A 41 441 47 HOH HOH . E 4 HOH A 42 442 37 HOH HOH . E 4 HOH A 43 443 34 HOH HOH . E 4 HOH A 44 444 32 HOH HOH . E 4 HOH A 45 445 49 HOH HOH . E 4 HOH A 46 446 41 HOH HOH . E 4 HOH A 47 447 48 HOH HOH . E 4 HOH A 48 448 26 HOH HOH . E 4 HOH A 49 449 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 841 . . . B 2 21.818 31.544 -1.503 1 21.89 ? O 841 301 A 1 HETATM 2 C C11 841 . . . B 2 20.73 31.817 -0.943 1 19.93 ? C11 841 301 A 1 HETATM 3 N N3 841 . . . B 2 19.62 31.776 -1.647 1 21.13 ? N3 841 301 A 1 HETATM 4 C C15 841 . . . B 2 19.672 31.363 -3.096 1 21.1 ? C15 841 301 A 1 HETATM 5 C C14 841 . . . B 2 18.291 31.901 -3.46 1 24.13 ? C14 841 301 A 1 HETATM 6 C C13 841 . . . B 2 17.388 31.841 -2.246 1 23.26 ? C13 841 301 A 1 HETATM 7 C C12 841 . . . B 2 18.323 32.183 -1.114 1 23.24 ? C12 841 301 A 1 HETATM 8 N N2 841 . . . B 2 20.691 32.129 0.383 1 21.26 ? N2 841 301 A 1 HETATM 9 C C10 841 . . . B 2 21.922 32.402 1.184 1 24.22 ? C10 841 301 A 1 HETATM 10 C C7 841 . . . B 2 22.627 33.739 0.783 1 23.45 ? C7 841 301 A 1 HETATM 11 C C6 841 . . . B 2 23.33 34.244 2.046 1 22.25 ? C6 841 301 A 1 HETATM 12 C C5 841 . . . B 2 23.984 35.595 1.749 1 23.68 ? C5 841 301 A 1 HETATM 13 C C8 841 . . . B 2 21.638 34.798 0.284 1 24.49 ? C8 841 301 A 1 HETATM 14 C C9 841 . . . B 2 22.384 36.146 0.011 1 25.24 ? C9 841 301 A 1 HETATM 15 N N1 841 . . . B 2 22.866 36.428 1.37 1 25.5 ? N1 841 301 A 1 HETATM 16 C C3 841 . . . B 2 22.068 37.145 2.296 1 28.18 ? C3 841 301 A 1 HETATM 17 C C4 841 . . . B 2 22.443 37.307 3.647 1 25.42 ? C4 841 301 A 1 HETATM 18 C C 841 . . . B 2 21.593 37.992 4.558 1 25.9 ? C 841 301 A 1 HETATM 19 N N 841 . . . B 2 20.864 37.61 1.854 1 28.05 ? N 841 301 A 1 HETATM 20 C C2 841 . . . B 2 19.992 38.248 2.692 1 24.63 ? C2 841 301 A 1 HETATM 21 C C1 841 . . . B 2 20.336 38.48 4.081 1 24.63 ? C1 841 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #