data_5EZH # _model_server_result.job_id xfokPm29_maPJf6JlIJb0Q _model_server_result.datetime_utc '2025-01-10 11:59:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ezh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5EZH # _exptl.entry_id 5EZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(1-pyridin-2-ylpiperidin-4-yl)methyl]pyrrolidine-1-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EZH _cell.length_a 121.41 _cell.length_b 121.41 _cell.length_c 33.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C16 H24 N4 O' _chem_comp.formula_weight 288.388 _chem_comp.id 841 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(1-pyridin-2-ylpiperidin-4-yl)methyl]pyrrolidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 841 sing 1 n n C14 C13 841 sing 2 n n C15 N3 841 sing 3 n n C13 C12 841 sing 4 n n N3 C12 841 sing 5 n n N3 C11 841 sing 6 n n O C11 841 doub 7 n n C11 N2 841 sing 8 n n C9 C8 841 sing 9 n n C9 N1 841 sing 10 n n C8 C7 841 sing 11 n n N2 C10 841 sing 12 n n C7 C10 841 sing 13 n n C7 C6 841 sing 14 n n N1 C5 841 sing 15 n n N1 C3 841 sing 16 n n C5 C6 841 sing 17 n n N C3 841 doub 18 n y N C2 841 sing 19 n y C3 C4 841 sing 20 n y C2 C1 841 doub 21 n y C4 C 841 doub 22 n y C1 C 841 sing 23 n y C15 H1 841 sing 24 n n C15 H2 841 sing 25 n n C14 H3 841 sing 26 n n C14 H4 841 sing 27 n n C13 H5 841 sing 28 n n C13 H6 841 sing 29 n n C12 H7 841 sing 30 n n C12 H8 841 sing 31 n n N2 H9 841 sing 32 n n C10 H10 841 sing 33 n n C10 H11 841 sing 34 n n C7 H12 841 sing 35 n n C6 H13 841 sing 36 n n C6 H14 841 sing 37 n n C5 H15 841 sing 38 n n C5 H16 841 sing 39 n n C8 H17 841 sing 40 n n C8 H18 841 sing 41 n n C9 H19 841 sing 42 n n C9 H20 841 sing 43 n n C4 H21 841 sing 44 n n C H22 841 sing 45 n n C2 H23 841 sing 46 n n C1 H24 841 sing 47 n n # _atom_sites.entry_id 5EZH _atom_sites.fract_transf_matrix[1][1] 0.008237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 841 A 1 301 1 841 841 . C 2 841 A 1 302 1 841 841 . D 3 SO4 A 1 303 1 SO4 SO4 . E 4 HOH A 1 401 45 HOH HOH . E 4 HOH A 2 402 22 HOH HOH . E 4 HOH A 3 403 2 HOH HOH . E 4 HOH A 4 404 12 HOH HOH . E 4 HOH A 5 405 17 HOH HOH . E 4 HOH A 6 406 15 HOH HOH . E 4 HOH A 7 407 43 HOH HOH . E 4 HOH A 8 408 38 HOH HOH . E 4 HOH A 9 409 14 HOH HOH . E 4 HOH A 10 410 16 HOH HOH . E 4 HOH A 11 411 3 HOH HOH . E 4 HOH A 12 412 33 HOH HOH . E 4 HOH A 13 413 30 HOH HOH . E 4 HOH A 14 414 25 HOH HOH . E 4 HOH A 15 415 4 HOH HOH . E 4 HOH A 16 416 8 HOH HOH . E 4 HOH A 17 417 18 HOH HOH . E 4 HOH A 18 418 42 HOH HOH . E 4 HOH A 19 419 9 HOH HOH . E 4 HOH A 20 420 36 HOH HOH . E 4 HOH A 21 421 11 HOH HOH . E 4 HOH A 22 422 29 HOH HOH . E 4 HOH A 23 423 6 HOH HOH . E 4 HOH A 24 424 23 HOH HOH . E 4 HOH A 25 425 1 HOH HOH . E 4 HOH A 26 426 7 HOH HOH . E 4 HOH A 27 427 27 HOH HOH . E 4 HOH A 28 428 5 HOH HOH . E 4 HOH A 29 429 35 HOH HOH . E 4 HOH A 30 430 31 HOH HOH . E 4 HOH A 31 431 24 HOH HOH . E 4 HOH A 32 432 19 HOH HOH . E 4 HOH A 33 433 21 HOH HOH . E 4 HOH A 34 434 28 HOH HOH . E 4 HOH A 35 435 10 HOH HOH . E 4 HOH A 36 436 44 HOH HOH . E 4 HOH A 37 437 13 HOH HOH . E 4 HOH A 38 438 20 HOH HOH . E 4 HOH A 39 439 40 HOH HOH . E 4 HOH A 40 440 39 HOH HOH . E 4 HOH A 41 441 47 HOH HOH . E 4 HOH A 42 442 37 HOH HOH . E 4 HOH A 43 443 34 HOH HOH . E 4 HOH A 44 444 32 HOH HOH . E 4 HOH A 45 445 49 HOH HOH . E 4 HOH A 46 446 41 HOH HOH . E 4 HOH A 47 447 48 HOH HOH . E 4 HOH A 48 448 26 HOH HOH . E 4 HOH A 49 449 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 841 . . . C 2 13.004 27.477 0.001 1 19.13 ? O 841 302 A 1 HETATM 2 C C11 841 . . . C 2 13.356 27.709 1.217 1 18.1 ? C11 841 302 A 1 HETATM 3 N N3 841 . . . C 2 14.558 28.291 1.471 1 19.04 ? N3 841 302 A 1 HETATM 4 C C15 841 . . . C 2 15.462 28.786 0.425 1 16.92 ? C15 841 302 A 1 HETATM 5 C C14 841 . . . C 2 16.414 29.726 1.145 1 18.41 ? C14 841 302 A 1 HETATM 6 C C13 841 . . . C 2 16.397 29.21 2.571 1 20.68 ? C13 841 302 A 1 HETATM 7 C C12 841 . . . C 2 14.958 28.683 2.812 1 18.18 ? C12 841 302 A 1 HETATM 8 N N2 841 . . . C 2 12.546 27.41 2.28 1 16.98 ? N2 841 302 A 1 HETATM 9 C C10 841 . . . C 2 11.178 26.916 2.007 1 16.94 ? C10 841 302 A 1 HETATM 10 C C7 841 . . . C 2 10.35 26.86 3.268 1 19.98 ? C7 841 302 A 1 HETATM 11 C C6 841 . . . C 2 9.037 26.122 2.993 1 20.8 ? C6 841 302 A 1 HETATM 12 C C5 841 . . . C 2 8.063 26.141 4.221 1 20.65 ? C5 841 302 A 1 HETATM 13 C C8 841 . . . C 2 10.038 28.265 3.789 1 21.69 ? C8 841 302 A 1 HETATM 14 C C9 841 . . . C 2 9.106 28.297 5.065 1 20.65 ? C9 841 302 A 1 HETATM 15 N N1 841 . . . C 2 7.953 27.543 4.599 1 22.13 ? N1 841 302 A 1 HETATM 16 C C3 841 . . . C 2 6.667 28.183 4.298 1 24.48 ? C3 841 302 A 1 HETATM 17 C C4 841 . . . C 2 5.779 27.483 3.519 1 24.95 ? C4 841 302 A 1 HETATM 18 C C 841 . . . C 2 4.535 28.033 3.174 1 30.13 ? C 841 302 A 1 HETATM 19 N N 841 . . . C 2 6.425 29.436 4.735 1 30.31 ? N 841 302 A 1 HETATM 20 C C2 841 . . . C 2 5.189 30.04 4.486 1 30.89 ? C2 841 302 A 1 HETATM 21 C C1 841 . . . C 2 4.303 29.313 3.739 1 29.5 ? C1 841 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #