data_5EZM # _model_server_result.job_id xHBblkJM-ui0JZidyd7GbQ _model_server_result.datetime_utc '2024-10-19 16:33:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ezm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5EZM # _exptl.entry_id 5EZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 779.165 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MONO-TRANS,OCTA-CIS DECAPRENYL-PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EZM _cell.length_a 58.604 _cell.length_b 80.63 _cell.length_c 150.253 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 87 A GLU 84 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 A OE2 GLU 87 A GLU 84 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A NE2 HIS 268 A HIS 265 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 A ND1 HIS 270 A HIS 267 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc5 A O GLN 578 A GLN 575 1_555 B ZN ZN . A ZN 601 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc6 A OXT GLN 578 A GLN 575 1_555 B ZN ZN . A ZN 601 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? # _chem_comp.formula 'C50 H83 O4 P' _chem_comp.formula_weight 779.165 _chem_comp.id DSL _chem_comp.mon_nstd_flag . _chem_comp.name 'MONO-TRANS, OCTA-CIS DECAPRENYL-PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C07 DSL sing 83 n n C07 C08 DSL sing 84 n n C07 C09 DSL doub 85 n n C09 C10 DSL sing 86 n n C10 C11 DSL sing 87 n n C11 C12 DSL sing 88 n n C12 C13 DSL sing 89 n n C12 C14 DSL doub 90 n n C14 C15 DSL sing 91 n n C15 C16 DSL sing 92 n n C16 C17 DSL sing 93 n n C17 C18 DSL sing 94 n n C17 C19 DSL doub 95 n n C19 C20 DSL sing 96 n n C20 C21 DSL sing 97 n n C21 C22 DSL sing 98 n n C22 C23 DSL sing 99 n n C22 C24 DSL doub 100 n n C24 C25 DSL sing 101 e n C25 C26 DSL sing 102 n n C26 C27 DSL sing 103 n n C27 C28 DSL sing 104 n n C27 C29 DSL doub 105 n n C29 C30 DSL sing 106 n n C30 C31 DSL sing 107 n n C31 C32 DSL sing 108 n n C32 C33 DSL sing 109 n n C32 C34 DSL doub 110 n n C34 C35 DSL sing 111 n n C35 C36 DSL sing 112 n n C36 C37 DSL sing 113 n n C37 C38 DSL sing 114 z n C37 C39 DSL doub 115 n n C39 C40 DSL sing 116 n n C40 C41 DSL sing 117 n n C41 C42 DSL sing 118 n n C42 C43 DSL sing 119 n n C42 C44 DSL doub 120 n n C44 C45 DSL sing 121 n n C45 C46 DSL sing 122 n n C46 C47 DSL sing 123 n n C47 C48 DSL sing 124 n n C47 C49 DSL doub 125 n n C49 C50 DSL sing 126 n n C50 C51 DSL sing 127 z n C51 C52 DSL sing 128 n n C52 C53 DSL sing 129 n n C52 C54 DSL doub 130 n n C54 C55 DSL sing 131 n n C55 O56 DSL sing 132 n n O56 P57 DSL sing 133 n n P57 O58 DSL doub 134 n n P57 O59 DSL sing 135 n n P57 O60 DSL sing 136 n n C06 H061 DSL sing 137 n n C06 H062 DSL sing 138 n n C06 H063 DSL sing 139 n n C08 H081 DSL sing 140 z n C08 H082 DSL sing 141 n n C08 H083 DSL sing 142 n n C09 H09 DSL sing 143 n n C10 H101 DSL sing 144 n n C10 H102 DSL sing 145 n n C11 H111 DSL sing 146 n n C11 H112 DSL sing 147 n n C13 H131 DSL sing 148 n n C13 H132 DSL sing 149 n n C13 H133 DSL sing 150 n n C14 H14 DSL sing 151 n n C15 H151 DSL sing 152 n n C15 H152 DSL sing 153 z n C16 H161 DSL sing 154 n n C16 H162 DSL sing 155 n n C18 H181 DSL sing 156 n n C18 H182 DSL sing 157 n n C18 H183 DSL sing 158 n n C19 H19 DSL sing 159 n n C20 H201 DSL sing 160 n n C20 H202 DSL sing 161 n n C21 H211 DSL sing 162 n n C21 H212 DSL sing 163 n n C23 H231 DSL sing 164 n n C23 H232 DSL sing 165 n n C23 H233 DSL sing 166 z n C24 H24 DSL sing 167 n n C25 H251 DSL sing 168 n n C25 H252 DSL sing 169 n n C26 H261 DSL sing 170 n n C26 H262 DSL sing 171 n n C28 H281 DSL sing 172 n n C28 H282 DSL sing 173 n n C28 H283 DSL sing 174 n n C29 H29 DSL sing 175 n n C30 H301 DSL sing 176 n n C30 H302 DSL sing 177 n n C31 H311 DSL sing 178 n n C31 H312 DSL sing 179 z n C33 H331 DSL sing 180 n n C33 H332 DSL sing 181 n n C33 H333 DSL sing 182 n n C34 H34 DSL sing 183 n n C35 H351 DSL sing 184 n n C35 H352 DSL sing 185 n n C36 H361 DSL sing 186 n n C36 H362 DSL sing 187 n n C38 H381 DSL sing 188 n n C38 H382 DSL sing 189 n n C38 H383 DSL sing 190 n n C39 H39 DSL sing 191 n n C40 H401 DSL sing 192 z n C40 H402 DSL sing 193 n n C41 H411 DSL sing 194 n n C41 H412 DSL sing 195 n n C43 H431 DSL sing 196 n n C43 H432 DSL sing 197 n n C43 H433 DSL sing 198 n n C44 H44 DSL sing 199 n n C45 H451 DSL sing 200 n n C45 H452 DSL sing 201 n n C46 H461 DSL sing 202 n n C46 H462 DSL sing 203 n n C48 H481 DSL sing 204 n n C48 H482 DSL sing 205 z n C48 H483 DSL sing 206 n n C49 H49 DSL sing 207 n n C50 H501 DSL sing 208 n n C50 H502 DSL sing 209 n n C51 H511 DSL sing 210 n n C51 H512 DSL sing 211 n n C53 H531 DSL sing 212 n n C53 H532 DSL sing 213 n n C53 H533 DSL sing 214 n n C54 H54 DSL sing 215 n n C55 H551 DSL sing 216 n n C55 H552 DSL sing 217 n n O60 H60 DSL sing 218 n n O59 H59 DSL sing 219 n n # _atom_sites.entry_id 5EZM _atom_sites.fract_transf_matrix[1][1] 0.017064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 1 ZN ZN . C 3 DSL A 1 602 1 DSL UNP . D 4 MPG A 1 603 3 MPG UNL . E 4 MPG A 1 604 4 MPG UNL . F 4 MPG A 1 605 6 MPG UNL . G 4 MPG A 1 606 8 MPG UNL . H 4 MPG A 1 607 9 MPG UNL . I 4 MPG A 1 608 10 MPG UNL . J 4 MPG A 1 609 11 MPG UNL . K 4 MPG A 1 610 15 MPG UNL . L 4 MPG A 1 611 16 MPG UNL . M 4 MPG A 1 612 17 MPG UNL . N 4 MPG A 1 613 19 MPG UNL . O 4 MPG A 1 614 20 MPG UNL . P 4 MPG A 1 615 21 MPG UNL . Q 4 MPG A 1 616 22 MPG UNL . R 4 MPG A 1 617 23 MPG UNL . S 4 MPG A 1 618 26 MPG UNL . T 4 MPG A 1 619 27 MPG UNL . U 4 MPG A 1 620 28 MPG UNL . V 4 MPG A 1 621 29 MPG UNL . W 4 MPG A 1 622 30 MPG UNL . X 4 MPG A 1 623 31 MPG UNL . Y 4 MPG A 1 624 33 MPG UNL . Z 4 MPG A 1 625 34 MPG UNL . AA 4 MPG A 1 626 37 MPG UNL . BA 4 MPG A 1 627 38 MPG UNL . CA 4 MPG A 1 628 39 MPG UNL . DA 4 MPG A 1 629 40 MPG UNL . EA 4 MPG A 1 630 42 MPG UNL . FA 4 MPG A 1 631 47 MPG UNL . GA 4 MPG A 1 632 50 MPG UNL . HA 4 MPG A 1 633 51 MPG UNL . IA 4 MPG A 1 634 52 MPG UNL . JA 4 MPG A 1 635 53 MPG UNL . KA 4 MPG A 1 636 56 MPG UNL . LA 4 MPG A 1 637 58 MPG UNL . MA 4 MPG A 1 638 66 MPG UNL . NA 4 MPG A 1 639 67 MPG UNL . OA 4 MPG A 1 640 68 MPG UNL . PA 4 MPG A 1 641 69 MPG UNL . QA 4 MPG A 1 642 72 MPG UNL . RA 4 MPG A 1 643 74 MPG UNL . SA 4 MPG A 1 644 75 MPG UNL . TA 4 MPG A 1 645 76 MPG UNL . UA 4 MPG A 1 646 80 MPG UNL . VA 4 MPG A 1 647 81 MPG UNL . WA 4 MPG A 1 648 82 MPG UNL . XA 4 MPG A 1 649 85 MPG UNL . YA 4 MPG A 1 650 86 MPG UNL . ZA 5 CL A 1 651 1 CL CL . AB 5 CL A 1 652 2 CL CL . BB 6 PO4 A 1 653 1 PO4 PO4 . CB 6 PO4 A 1 654 2 PO4 PO4 . DB 7 PC A 1 655 1 PC PC . EB 8 EPE A 1 656 1 EPE EPE . FB 9 HOH A 1 701 14 HOH HOH . FB 9 HOH A 2 702 50 HOH HOH . FB 9 HOH A 3 703 47 HOH HOH . FB 9 HOH A 4 704 2 HOH HOH . FB 9 HOH A 5 705 30 HOH HOH . FB 9 HOH A 6 706 11 HOH HOH . FB 9 HOH A 7 707 10 HOH HOH . FB 9 HOH A 8 708 18 HOH HOH . FB 9 HOH A 9 709 36 HOH HOH . FB 9 HOH A 10 710 43 HOH HOH . FB 9 HOH A 11 711 21 HOH HOH . FB 9 HOH A 12 712 33 HOH HOH . FB 9 HOH A 13 713 1 HOH HOH . FB 9 HOH A 14 714 29 HOH HOH . FB 9 HOH A 15 715 37 HOH HOH . FB 9 HOH A 16 716 41 HOH HOH . FB 9 HOH A 17 717 31 HOH HOH . FB 9 HOH A 18 718 40 HOH HOH . FB 9 HOH A 19 719 6 HOH HOH . FB 9 HOH A 20 720 32 HOH HOH . FB 9 HOH A 21 721 3 HOH HOH . FB 9 HOH A 22 722 12 HOH HOH . FB 9 HOH A 23 723 28 HOH HOH . FB 9 HOH A 24 724 42 HOH HOH . FB 9 HOH A 25 725 24 HOH HOH . FB 9 HOH A 26 726 4 HOH HOH . FB 9 HOH A 27 727 34 HOH HOH . FB 9 HOH A 28 728 13 HOH HOH . FB 9 HOH A 29 729 26 HOH HOH . FB 9 HOH A 30 730 27 HOH HOH . FB 9 HOH A 31 731 38 HOH HOH . FB 9 HOH A 32 732 19 HOH HOH . FB 9 HOH A 33 733 25 HOH HOH . FB 9 HOH A 34 734 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 DSL . . . C 3 36.16 14.204 31.082 1 81.97 ? C21 DSL 602 A 1 HETATM 2 C C22 DSL . . . C 3 35.927 12.773 31.534 1 82.64 ? C22 DSL 602 A 1 HETATM 3 C C23 DSL . . . C 3 37.116 11.863 31.817 1 84.58 ? C23 DSL 602 A 1 HETATM 4 C C24 DSL . . . C 3 34.674 12.317 31.683 1 81.65 ? C24 DSL 602 A 1 HETATM 5 C C25 DSL . . . C 3 34.424 10.859 32.147 1 80.59 ? C25 DSL 602 A 1 HETATM 6 C C26 DSL . . . C 3 33.318 10.881 33.238 1 80.4 ? C26 DSL 602 A 1 HETATM 7 C C27 DSL . . . C 3 32.132 9.952 32.808 1 81 ? C27 DSL 602 A 1 HETATM 8 C C28 DSL . . . C 3 32.389 8.774 31.837 1 81.5 ? C28 DSL 602 A 1 HETATM 9 C C29 DSL . . . C 3 30.892 10.18 33.285 1 82.52 ? C29 DSL 602 A 1 HETATM 10 C C30 DSL . . . C 3 30.639 11.359 34.26 1 83.52 ? C30 DSL 602 A 1 HETATM 11 C C31 DSL . . . C 3 29.162 11.86 34.124 1 83.68 ? C31 DSL 602 A 1 HETATM 12 C C32 DSL . . . C 3 28.479 11.903 35.537 1 83.34 ? C32 DSL 602 A 1 HETATM 13 C C33 DSL . . . C 3 27.921 10.613 36.167 1 82.79 ? C33 DSL 602 A 1 HETATM 14 C C34 DSL . . . C 3 28.369 13.08 36.199 1 83.61 ? C34 DSL 602 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #