data_5EZM
#
_model_server_result.job_id            doVWGNRfNYNYAzRMrb3spw 
_model_server_result.datetime_utc      '2024-10-19 16:31:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ezm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":609}' 
#
_entry.id    5EZM 
#
_exptl.entry_id    5EZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_entity.pdbx_number_of_molecules    48 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EZM 
_cell.length_a            58.604 
_cell.length_b            80.63 
_cell.length_c            150.253 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
? 4 EA N N 
? 4 FA N N 
? 4 GA N N 
? 4 HA N N 
? 4 IA N N 
? 4 JA N N 
? 4 KA N N 
? 4 LA N N 
? 4 MA N N 
? 4 NA N N 
? 4 OA N N 
? 4 PA N N 
? 4 QA N N 
? 4 RA N N 
? 4 SA N N 
? 4 TA N N 
? 4 UA N N 
? 4 VA N N 
? 4 WA N N 
? 4 XA N N 
? 4 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 87 A GLU 84 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc2 A OE2 GLU 87 A GLU 84 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc3 A NE2 HIS 268 A HIS 265 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc4 A ND1 HIS 270 A HIS 267 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc5 A O GLN 578 A GLN 575 1_555 B ZN ZN . A ZN 601 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc6 A OXT GLN 578 A GLN 575 1_555 B ZN ZN . A ZN 601 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                MPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 MPG sing 407 n n 
C2 C1 MPG sing 408 n n 
C3 C4 MPG sing 409 n n 
C4 C5 MPG sing 410 n n 
C5 C6 MPG sing 411 n n 
C6 C7 MPG sing 412 n n 
C7 C8 MPG sing 413 n n 
C8 C9 MPG sing 414 n n 
C9 C10 MPG doub 415 z n 
C10 C11 MPG sing 416 n n 
C11 C12 MPG sing 417 n n 
C12 C13 MPG sing 418 n n 
C13 C14 MPG sing 419 n n 
C14 C15 MPG sing 420 n n 
C15 C16 MPG sing 421 n n 
C16 C17 MPG sing 422 n n 
C17 C18 MPG sing 423 n n 
O1 C1 MPG sing 424 n n 
O1 CX3 MPG sing 425 n n 
CXD O2 MPG sing 426 n n 
CXD C21 MPG sing 427 n n 
CXD CX3 MPG sing 428 n n 
C21 O3 MPG sing 429 n n 
C2 H21C MPG sing 430 n n 
C2 H22C MPG sing 431 n n 
C3 H31C MPG sing 432 n n 
C3 H32C MPG sing 433 n n 
CX3 O4 MPG doub 434 n n 
C4 H41C MPG sing 435 n n 
C4 H42C MPG sing 436 n n 
C5 H51C MPG sing 437 n n 
C5 H52C MPG sing 438 n n 
C6 H61C MPG sing 439 n n 
C6 H62C MPG sing 440 n n 
C7 H71C MPG sing 441 n n 
C7 H72C MPG sing 442 n n 
C8 H81C MPG sing 443 n n 
C8 H82C MPG sing 444 n n 
C9 H9 MPG sing 445 n n 
C10 H10 MPG sing 446 n n 
C11 H111 MPG sing 447 n n 
C11 H112 MPG sing 448 n n 
C12 H121 MPG sing 449 n n 
C12 H122 MPG sing 450 n n 
C13 H131 MPG sing 451 n n 
C13 H132 MPG sing 452 n n 
C14 H141 MPG sing 453 n n 
C14 H142 MPG sing 454 n n 
C15 H151 MPG sing 455 n n 
C15 H152 MPG sing 456 n n 
C16 H161 MPG sing 457 n n 
C16 H162 MPG sing 458 n n 
C17 H171 MPG sing 459 n n 
C17 H172 MPG sing 460 n n 
C18 H181 MPG sing 461 n n 
C18 H182 MPG sing 462 n n 
C18 H183 MPG sing 463 n n 
C1 HX31 MPG sing 464 n n 
C1 HX32 MPG sing 465 n n 
CXD HXD MPG sing 466 n n 
O2 H2 MPG sing 467 n n 
C21 H211 MPG sing 468 n n 
C21 H212 MPG sing 469 n n 
O3 H3 MPG sing 470 n n 
#
_atom_sites.entry_id                     5EZM 
_atom_sites.fract_transf_matrix[1][1]    0.017064 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 601 1 ZN ZN . 
C 3 DSL A 1 602 1 DSL UNP . 
D 4 MPG A 1 603 3 MPG UNL . 
E 4 MPG A 1 604 4 MPG UNL . 
F 4 MPG A 1 605 6 MPG UNL . 
G 4 MPG A 1 606 8 MPG UNL . 
H 4 MPG A 1 607 9 MPG UNL . 
I 4 MPG A 1 608 10 MPG UNL . 
J 4 MPG A 1 609 11 MPG UNL . 
K 4 MPG A 1 610 15 MPG UNL . 
L 4 MPG A 1 611 16 MPG UNL . 
M 4 MPG A 1 612 17 MPG UNL . 
N 4 MPG A 1 613 19 MPG UNL . 
O 4 MPG A 1 614 20 MPG UNL . 
P 4 MPG A 1 615 21 MPG UNL . 
Q 4 MPG A 1 616 22 MPG UNL . 
R 4 MPG A 1 617 23 MPG UNL . 
S 4 MPG A 1 618 26 MPG UNL . 
T 4 MPG A 1 619 27 MPG UNL . 
U 4 MPG A 1 620 28 MPG UNL . 
V 4 MPG A 1 621 29 MPG UNL . 
W 4 MPG A 1 622 30 MPG UNL . 
X 4 MPG A 1 623 31 MPG UNL . 
Y 4 MPG A 1 624 33 MPG UNL . 
Z 4 MPG A 1 625 34 MPG UNL . 
AA 4 MPG A 1 626 37 MPG UNL . 
BA 4 MPG A 1 627 38 MPG UNL . 
CA 4 MPG A 1 628 39 MPG UNL . 
DA 4 MPG A 1 629 40 MPG UNL . 
EA 4 MPG A 1 630 42 MPG UNL . 
FA 4 MPG A 1 631 47 MPG UNL . 
GA 4 MPG A 1 632 50 MPG UNL . 
HA 4 MPG A 1 633 51 MPG UNL . 
IA 4 MPG A 1 634 52 MPG UNL . 
JA 4 MPG A 1 635 53 MPG UNL . 
KA 4 MPG A 1 636 56 MPG UNL . 
LA 4 MPG A 1 637 58 MPG UNL . 
MA 4 MPG A 1 638 66 MPG UNL . 
NA 4 MPG A 1 639 67 MPG UNL . 
OA 4 MPG A 1 640 68 MPG UNL . 
PA 4 MPG A 1 641 69 MPG UNL . 
QA 4 MPG A 1 642 72 MPG UNL . 
RA 4 MPG A 1 643 74 MPG UNL . 
SA 4 MPG A 1 644 75 MPG UNL . 
TA 4 MPG A 1 645 76 MPG UNL . 
UA 4 MPG A 1 646 80 MPG UNL . 
VA 4 MPG A 1 647 81 MPG UNL . 
WA 4 MPG A 1 648 82 MPG UNL . 
XA 4 MPG A 1 649 85 MPG UNL . 
YA 4 MPG A 1 650 86 MPG UNL . 
ZA 5 CL A 1 651 1 CL CL . 
AB 5 CL A 1 652 2 CL CL . 
BB 6 PO4 A 1 653 1 PO4 PO4 . 
CB 6 PO4 A 1 654 2 PO4 PO4 . 
DB 7 PC A 1 655 1 PC PC . 
EB 8 EPE A 1 656 1 EPE EPE . 
FB 9 HOH A 1 701 14 HOH HOH . 
FB 9 HOH A 2 702 50 HOH HOH . 
FB 9 HOH A 3 703 47 HOH HOH . 
FB 9 HOH A 4 704 2 HOH HOH . 
FB 9 HOH A 5 705 30 HOH HOH . 
FB 9 HOH A 6 706 11 HOH HOH . 
FB 9 HOH A 7 707 10 HOH HOH . 
FB 9 HOH A 8 708 18 HOH HOH . 
FB 9 HOH A 9 709 36 HOH HOH . 
FB 9 HOH A 10 710 43 HOH HOH . 
FB 9 HOH A 11 711 21 HOH HOH . 
FB 9 HOH A 12 712 33 HOH HOH . 
FB 9 HOH A 13 713 1 HOH HOH . 
FB 9 HOH A 14 714 29 HOH HOH . 
FB 9 HOH A 15 715 37 HOH HOH . 
FB 9 HOH A 16 716 41 HOH HOH . 
FB 9 HOH A 17 717 31 HOH HOH . 
FB 9 HOH A 18 718 40 HOH HOH . 
FB 9 HOH A 19 719 6 HOH HOH . 
FB 9 HOH A 20 720 32 HOH HOH . 
FB 9 HOH A 21 721 3 HOH HOH . 
FB 9 HOH A 22 722 12 HOH HOH . 
FB 9 HOH A 23 723 28 HOH HOH . 
FB 9 HOH A 24 724 42 HOH HOH . 
FB 9 HOH A 25 725 24 HOH HOH . 
FB 9 HOH A 26 726 4 HOH HOH . 
FB 9 HOH A 27 727 34 HOH HOH . 
FB 9 HOH A 28 728 13 HOH HOH . 
FB 9 HOH A 29 729 26 HOH HOH . 
FB 9 HOH A 30 730 27 HOH HOH . 
FB 9 HOH A 31 731 38 HOH HOH . 
FB 9 HOH A 32 732 19 HOH HOH . 
FB 9 HOH A 33 733 25 HOH HOH . 
FB 9 HOH A 34 734 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 MPG . . . J 4 52.901 3.082 29.136 1 80.89 ? C2 MPG 609 A 1 
HETATM 2 C C3 MPG . . . J 4 52.766 3.485 27.673 1 81.01 ? C3 MPG 609 A 1 
HETATM 3 C C4 MPG . . . J 4 54.103 3.866 27.059 1 81.98 ? C4 MPG 609 A 1 
HETATM 4 C C5 MPG . . . J 4 53.962 4.38 25.617 1 83.59 ? C5 MPG 609 A 1 
HETATM 5 C C6 MPG . . . J 4 55.318 4.774 25.008 1 84.89 ? C6 MPG 609 A 1 
HETATM 6 C C7 MPG . . . J 4 55.182 5.439 23.624 1 85.27 ? C7 MPG 609 A 1 
HETATM 7 C C8 MPG . . . J 4 56.553 5.86 23.043 1 85.06 ? C8 MPG 609 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#