data_5EZS # _model_server_result.job_id F176iCL8j2VEVOY3T8EHCw _model_server_result.datetime_utc '2024-11-07 05:47:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ezs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5EZS # _exptl.entry_id 5EZS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EZS _cell.length_a 60.89 _cell.length_b 63.63 _cell.length_c 86.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 23 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 477 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id E6D _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id E6D _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.696 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H32 N2 O5' _chem_comp.formula_weight 344.446 _chem_comp.id E6D _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (3S)-3-hydroxy-4-({(2S)-4-methyl-1-[(3-methylbutyl)amino]-1-oxopentan-2-yl}amino)-4-oxobutanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 O17 E6D sing 83 n n O18 C16 E6D doub 84 n n O17 C16 E6D sing 85 n n C16 C2 E6D sing 86 n n C2 C3 E6D sing 87 n n O1 C3 E6D sing 88 n n C3 C4 E6D sing 89 n n C4 O5 E6D doub 90 n n C4 N6 E6D sing 91 n n N6 C7 E6D sing 92 n n C7 C8 E6D sing 93 n n C7 C19 E6D sing 94 n n O9 C8 E6D doub 95 n n C8 N10 E6D sing 96 n n C19 C20 E6D sing 97 n n C22 C20 E6D sing 98 n n C20 C21 E6D sing 99 n n N10 C11 E6D sing 100 n n C12 C11 E6D sing 101 n n C12 C13 E6D sing 102 n n C13 C15 E6D sing 103 n n C13 C14 E6D sing 104 n n C14 H1 E6D sing 105 n n C14 H2 E6D sing 106 n n C14 H3 E6D sing 107 n n C13 H4 E6D sing 108 n n C15 H5 E6D sing 109 n n C15 H6 E6D sing 110 n n C15 H7 E6D sing 111 n n C12 H8 E6D sing 112 n n C12 H9 E6D sing 113 n n C11 H10 E6D sing 114 n n C11 H11 E6D sing 115 n n N10 H12 E6D sing 116 n n C7 H13 E6D sing 117 n n C19 H14 E6D sing 118 n n C19 H15 E6D sing 119 n n C20 H16 E6D sing 120 n n C22 H17 E6D sing 121 n n C22 H18 E6D sing 122 n n C22 H19 E6D sing 123 n n C21 H20 E6D sing 124 n n C21 H21 E6D sing 125 n n C21 H22 E6D sing 126 n n N6 H23 E6D sing 127 n n C3 H24 E6D sing 128 n n O1 H25 E6D sing 129 n n C2 H26 E6D sing 130 n n C2 H27 E6D sing 131 n n C23 H28 E6D sing 132 n n C23 H29 E6D sing 133 n n C23 C24 E6D sing 134 n n C24 H30 E6D sing 135 n n C24 H31 E6D sing 136 n n C24 H32 E6D sing 137 n n # _atom_sites.entry_id 5EZS _atom_sites.fract_transf_matrix[1][1] 0.016423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E6D A 1 801 999 E6D E6D . C 3 HOH A 1 901 207 HOH HOH . C 3 HOH A 2 902 91 HOH HOH . C 3 HOH A 3 903 14 HOH HOH . C 3 HOH A 4 904 38 HOH HOH . C 3 HOH A 5 905 57 HOH HOH . C 3 HOH A 6 906 105 HOH HOH . C 3 HOH A 7 907 51 HOH HOH . C 3 HOH A 8 908 2 HOH HOH . C 3 HOH A 9 909 189 HOH HOH . C 3 HOH A 10 910 168 HOH HOH . C 3 HOH A 11 911 146 HOH HOH . C 3 HOH A 12 912 53 HOH HOH . C 3 HOH A 13 913 1 HOH HOH . C 3 HOH A 14 914 126 HOH HOH . C 3 HOH A 15 915 30 HOH HOH . C 3 HOH A 16 916 199 HOH HOH . C 3 HOH A 17 917 52 HOH HOH . C 3 HOH A 18 918 78 HOH HOH . C 3 HOH A 19 919 33 HOH HOH . C 3 HOH A 20 920 123 HOH HOH . C 3 HOH A 21 921 181 HOH HOH . C 3 HOH A 22 922 20 HOH HOH . C 3 HOH A 23 923 159 HOH HOH . C 3 HOH A 24 924 183 HOH HOH . C 3 HOH A 25 925 46 HOH HOH . C 3 HOH A 26 926 150 HOH HOH . C 3 HOH A 27 927 174 HOH HOH . C 3 HOH A 28 928 71 HOH HOH . C 3 HOH A 29 929 35 HOH HOH . C 3 HOH A 30 930 185 HOH HOH . C 3 HOH A 31 931 104 HOH HOH . C 3 HOH A 32 932 173 HOH HOH . C 3 HOH A 33 933 42 HOH HOH . C 3 HOH A 34 934 186 HOH HOH . C 3 HOH A 35 935 192 HOH HOH . C 3 HOH A 36 936 96 HOH HOH . C 3 HOH A 37 937 131 HOH HOH . C 3 HOH A 38 938 34 HOH HOH . C 3 HOH A 39 939 140 HOH HOH . C 3 HOH A 40 940 29 HOH HOH . C 3 HOH A 41 941 121 HOH HOH . C 3 HOH A 42 942 48 HOH HOH . C 3 HOH A 43 943 203 HOH HOH . C 3 HOH A 44 944 137 HOH HOH . C 3 HOH A 45 945 8 HOH HOH . C 3 HOH A 46 946 116 HOH HOH . C 3 HOH A 47 947 204 HOH HOH . C 3 HOH A 48 948 62 HOH HOH . C 3 HOH A 49 949 16 HOH HOH . C 3 HOH A 50 950 26 HOH HOH . C 3 HOH A 51 951 122 HOH HOH . C 3 HOH A 52 952 11 HOH HOH . C 3 HOH A 53 953 190 HOH HOH . C 3 HOH A 54 954 45 HOH HOH . C 3 HOH A 55 955 59 HOH HOH . C 3 HOH A 56 956 198 HOH HOH . C 3 HOH A 57 957 10 HOH HOH . C 3 HOH A 58 958 169 HOH HOH . C 3 HOH A 59 959 88 HOH HOH . C 3 HOH A 60 960 76 HOH HOH . C 3 HOH A 61 961 160 HOH HOH . C 3 HOH A 62 962 125 HOH HOH . C 3 HOH A 63 963 82 HOH HOH . C 3 HOH A 64 964 68 HOH HOH . C 3 HOH A 65 965 143 HOH HOH . C 3 HOH A 66 966 111 HOH HOH . C 3 HOH A 67 967 98 HOH HOH . C 3 HOH A 68 968 6 HOH HOH . C 3 HOH A 69 969 64 HOH HOH . C 3 HOH A 70 970 43 HOH HOH . C 3 HOH A 71 971 161 HOH HOH . C 3 HOH A 72 972 28 HOH HOH . C 3 HOH A 73 973 44 HOH HOH . C 3 HOH A 74 974 89 HOH HOH . C 3 HOH A 75 975 93 HOH HOH . C 3 HOH A 76 976 118 HOH HOH . C 3 HOH A 77 977 5 HOH HOH . C 3 HOH A 78 978 66 HOH HOH . C 3 HOH A 79 979 73 HOH HOH . C 3 HOH A 80 980 170 HOH HOH . C 3 HOH A 81 981 134 HOH HOH . C 3 HOH A 82 982 107 HOH HOH . C 3 HOH A 83 983 102 HOH HOH . C 3 HOH A 84 984 155 HOH HOH . C 3 HOH A 85 985 12 HOH HOH . C 3 HOH A 86 986 31 HOH HOH . C 3 HOH A 87 987 130 HOH HOH . C 3 HOH A 88 988 24 HOH HOH . C 3 HOH A 89 989 32 HOH HOH . C 3 HOH A 90 990 132 HOH HOH . C 3 HOH A 91 991 151 HOH HOH . C 3 HOH A 92 992 41 HOH HOH . C 3 HOH A 93 993 77 HOH HOH . C 3 HOH A 94 994 124 HOH HOH . C 3 HOH A 95 995 138 HOH HOH . C 3 HOH A 96 996 15 HOH HOH . C 3 HOH A 97 997 81 HOH HOH . C 3 HOH A 98 998 205 HOH HOH . C 3 HOH A 99 999 55 HOH HOH . C 3 HOH A 100 1000 18 HOH HOH . C 3 HOH A 101 1001 39 HOH HOH . C 3 HOH A 102 1002 113 HOH HOH . C 3 HOH A 103 1003 101 HOH HOH . C 3 HOH A 104 1004 61 HOH HOH . C 3 HOH A 105 1005 21 HOH HOH . C 3 HOH A 106 1006 119 HOH HOH . C 3 HOH A 107 1007 50 HOH HOH . C 3 HOH A 108 1008 147 HOH HOH . C 3 HOH A 109 1009 114 HOH HOH . C 3 HOH A 110 1010 92 HOH HOH . C 3 HOH A 111 1011 99 HOH HOH . C 3 HOH A 112 1012 100 HOH HOH . C 3 HOH A 113 1013 79 HOH HOH . C 3 HOH A 114 1014 158 HOH HOH . C 3 HOH A 115 1015 115 HOH HOH . C 3 HOH A 116 1016 27 HOH HOH . C 3 HOH A 117 1017 23 HOH HOH . C 3 HOH A 118 1018 17 HOH HOH . C 3 HOH A 119 1019 117 HOH HOH . C 3 HOH A 120 1020 136 HOH HOH . C 3 HOH A 121 1021 63 HOH HOH . C 3 HOH A 122 1022 9 HOH HOH . C 3 HOH A 123 1023 37 HOH HOH . C 3 HOH A 124 1024 94 HOH HOH . C 3 HOH A 125 1025 103 HOH HOH . C 3 HOH A 126 1026 47 HOH HOH . C 3 HOH A 127 1027 4 HOH HOH . C 3 HOH A 128 1028 196 HOH HOH . C 3 HOH A 129 1029 176 HOH HOH . C 3 HOH A 130 1030 129 HOH HOH . C 3 HOH A 131 1031 135 HOH HOH . C 3 HOH A 132 1032 72 HOH HOH . C 3 HOH A 133 1033 70 HOH HOH . C 3 HOH A 134 1034 165 HOH HOH . C 3 HOH A 135 1035 54 HOH HOH . C 3 HOH A 136 1036 83 HOH HOH . C 3 HOH A 137 1037 171 HOH HOH . C 3 HOH A 138 1038 36 HOH HOH . C 3 HOH A 139 1039 106 HOH HOH . C 3 HOH A 140 1040 195 HOH HOH . C 3 HOH A 141 1041 120 HOH HOH . C 3 HOH A 142 1042 127 HOH HOH . C 3 HOH A 143 1043 153 HOH HOH . C 3 HOH A 144 1044 95 HOH HOH . C 3 HOH A 145 1045 172 HOH HOH . C 3 HOH A 146 1046 60 HOH HOH . C 3 HOH A 147 1047 167 HOH HOH . C 3 HOH A 148 1048 67 HOH HOH . C 3 HOH A 149 1049 13 HOH HOH . C 3 HOH A 150 1050 154 HOH HOH . C 3 HOH A 151 1051 191 HOH HOH . C 3 HOH A 152 1052 182 HOH HOH . C 3 HOH A 153 1053 110 HOH HOH . C 3 HOH A 154 1054 75 HOH HOH . C 3 HOH A 155 1055 25 HOH HOH . C 3 HOH A 156 1056 74 HOH HOH . C 3 HOH A 157 1057 97 HOH HOH . C 3 HOH A 158 1058 128 HOH HOH . C 3 HOH A 159 1059 166 HOH HOH . C 3 HOH A 160 1060 184 HOH HOH . C 3 HOH A 161 1061 144 HOH HOH . C 3 HOH A 162 1062 208 HOH HOH . C 3 HOH A 163 1063 3 HOH HOH . C 3 HOH A 164 1064 65 HOH HOH . C 3 HOH A 165 1065 7 HOH HOH . C 3 HOH A 166 1066 69 HOH HOH . C 3 HOH A 167 1067 180 HOH HOH . C 3 HOH A 168 1068 49 HOH HOH . C 3 HOH A 169 1069 142 HOH HOH . C 3 HOH A 170 1070 19 HOH HOH . C 3 HOH A 171 1071 58 HOH HOH . C 3 HOH A 172 1072 193 HOH HOH . C 3 HOH A 173 1073 84 HOH HOH . C 3 HOH A 174 1074 175 HOH HOH . C 3 HOH A 175 1075 200 HOH HOH . C 3 HOH A 176 1076 40 HOH HOH . C 3 HOH A 177 1077 156 HOH HOH . C 3 HOH A 178 1078 206 HOH HOH . C 3 HOH A 179 1079 157 HOH HOH . C 3 HOH A 180 1080 163 HOH HOH . C 3 HOH A 181 1081 90 HOH HOH . C 3 HOH A 182 1082 85 HOH HOH . C 3 HOH A 183 1083 179 HOH HOH . C 3 HOH A 184 1084 133 HOH HOH . C 3 HOH A 185 1085 56 HOH HOH . C 3 HOH A 186 1086 145 HOH HOH . C 3 HOH A 187 1087 177 HOH HOH . C 3 HOH A 188 1088 112 HOH HOH . C 3 HOH A 189 1089 22 HOH HOH . C 3 HOH A 190 1090 148 HOH HOH . C 3 HOH A 191 1091 87 HOH HOH . C 3 HOH A 192 1092 141 HOH HOH . C 3 HOH A 193 1093 187 HOH HOH . C 3 HOH A 194 1094 194 HOH HOH . C 3 HOH A 195 1095 149 HOH HOH . C 3 HOH A 196 1096 152 HOH HOH . C 3 HOH A 197 1097 164 HOH HOH . C 3 HOH A 198 1098 201 HOH HOH . C 3 HOH A 199 1099 80 HOH HOH . C 3 HOH A 200 1100 178 HOH HOH . C 3 HOH A 201 1101 108 HOH HOH . C 3 HOH A 202 1102 86 HOH HOH . C 3 HOH A 203 1103 162 HOH HOH . C 3 HOH A 204 1104 202 HOH HOH . C 3 HOH A 205 1105 197 HOH HOH . C 3 HOH A 206 1106 188 HOH HOH . C 3 HOH A 207 1107 109 HOH HOH . C 3 HOH A 208 1108 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 E6D . . . B 2 22.997 39.511 8.13 0.75 27.91 ? C14 E6D 801 A 1 HETATM 2 C C13 E6D . . . B 2 22.803 40.303 6.862 0.75 27.91 ? C13 E6D 801 A 1 HETATM 3 C C15 E6D . . . B 2 21.786 41.306 7.23 0.75 28.64 ? C15 E6D 801 A 1 HETATM 4 C C12 E6D . . . B 2 22.269 39.443 5.68 0.75 28.27 ? C12 E6D 801 A 1 HETATM 5 C C11 E6D . . . B 2 20.834 38.947 5.69 0.75 28.3 ? C11 E6D 801 A 1 HETATM 6 N N10 E6D . . . B 2 19.786 39.922 5.276 0.75 29.06 ? N10 E6D 801 A 1 HETATM 7 C C8 E6D . . . B 2 19.857 41.083 4.496 0.75 28.96 ? C8 E6D 801 A 1 HETATM 8 O O9 E6D . . . B 2 18.848 41.753 4.261 0.75 29.75 ? O9 E6D 801 A 1 HETATM 9 C C7 E6D . . . B 2 21.247 41.532 3.852 0.75 27.81 ? C7 E6D 801 A 1 HETATM 10 C C19 E6D . . . B 2 22.208 42.368 4.675 0.75 28.32 ? C19 E6D 801 A 1 HETATM 11 C C20 E6D . . . B 2 21.886 43.779 5.065 0.75 28.69 ? C20 E6D 801 A 1 HETATM 12 C C22 E6D . . . B 2 23.112 44.662 4.988 0.75 28.7 ? C22 E6D 801 A 1 HETATM 13 C C21 E6D . . . B 2 21.453 43.734 6.527 0.75 28.88 ? C21 E6D 801 A 1 HETATM 14 N N6 E6D . . . B 2 21.145 41.96 2.42 0.75 26.24 ? N6 E6D 801 A 1 HETATM 15 C C4 E6D . . . B 2 22.112 41.67 1.56 0.75 24.63 ? C4 E6D 801 A 1 HETATM 16 O O5 E6D . . . B 2 23.075 41.084 1.914 0.75 23.37 ? O5 E6D 801 A 1 HETATM 17 C C3 E6D . . . B 2 21.958 42.017 0.03 0.75 23.78 ? C3 E6D 801 A 1 HETATM 18 O O1 E6D . . . B 2 20.664 42.287 -0.344 0.75 24.17 ? O1 E6D 801 A 1 HETATM 19 C C2 E6D . . . B 2 22.892 43.154 -0.464 0.75 22.63 ? C2 E6D 801 A 1 HETATM 20 C C16 E6D . . . B 2 22.533 43.453 -1.898 0.75 23.3 ? C16 E6D 801 A 1 HETATM 21 O O18 E6D . . . B 2 23.087 42.915 -2.823 0.75 22.59 ? O18 E6D 801 A 1 HETATM 22 O O17 E6D . . . B 2 21.576 44.381 -2.037 0.75 24.32 ? O17 E6D 801 A 1 HETATM 23 C C23 E6D . . . B 2 20.858 44.358 -3.261 0.75 24.27 ? C23 E6D 801 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #