data_5EZV # _model_server_result.job_id L_u4udiSsw2VIukbkXBbRg _model_server_result.datetime_utc '2024-11-06 15:31:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ezv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 5EZV # _exptl.entry_id 5EZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 231.099 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(5-hydroxyl-isoxazol-3-yl)-furan-2-phosphonic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.16 _cell.angle_gamma 90 _cell.entry_id 5EZV _cell.length_a 75.608 _cell.length_b 134.112 _cell.length_c 141.287 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,K,L,O,P,S 1 1 C,D,F,I,J,M,N,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OD2 ASP 180 A ASP 166 1_555 B NH2 ARG 256 B ARG 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale2 A C ARG 185 A ARG 171 1_555 A N TPO 186 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C TPO 186 A TPO 172 1_555 A N SER 187 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 B C ARG 107 B ARG 107 1_555 B N SEP 108 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 B C SEP 108 B SEP 108 1_555 B N HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 C C ARG 185 C ARG 171 1_555 C N TPO 186 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 C C TPO 186 C TPO 172 1_555 C N SER 187 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 D C ARG 107 D ARG 107 1_555 D N SEP 108 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale9 D C SEP 108 D SEP 108 1_555 D N HIS 109 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C7 H6 N O6 P' _chem_comp.formula_weight 231.099 _chem_comp.id C2Z _chem_comp.mon_nstd_flag . _chem_comp.name '5-(5-hydroxyl-isoxazol-3-yl)-furan-2-phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[5-(5-hydroxy-1,2-oxazol-3-yl)furan-2-yl]phosphonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC PAO C2Z doub 111 n n OAB PAO C2Z sing 112 n n NAH OAI C2Z sing 113 n y NAH CAL C2Z doub 114 n y OAI CAK C2Z sing 115 n y OAJ CAN C2Z sing 116 n y OAJ CAM C2Z sing 117 n y PAO CAN C2Z sing 118 n n PAO OAD C2Z sing 119 n n CAL CAM C2Z sing 120 n n CAL CAG C2Z sing 121 n y CAK OAA C2Z sing 122 n n CAK CAG C2Z doub 123 n y CAN CAF C2Z doub 124 n y CAM CAE C2Z doub 125 n y CAF CAE C2Z sing 126 n y OAB H1 C2Z sing 127 n n OAD H2 C2Z sing 128 n n CAF H3 C2Z sing 129 n n CAE H4 C2Z sing 130 n n CAG H5 C2Z sing 131 n n OAA H7 C2Z sing 132 n n # _atom_sites.entry_id 5EZV _atom_sites.fract_transf_matrix[1][1] 0.013226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00073 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 STU A 1 601 1552 STU STU . H 5 C1V A 1 602 1271 C1V C1V . I 4 STU C 1 601 1552 STU STU . J 5 C1V C 1 602 1553 C1V C1V . K 6 C2Z E 1 401 5 C2Z C2Z . L 6 C2Z E 1 402 6 C2Z C2Z . M 6 C2Z F 1 401 7 C2Z C2Z . N 6 C2Z F 1 402 8 C2Z C2Z . O 7 HOH A 1 701 35 HOH HOH . O 7 HOH A 2 702 5 HOH HOH . O 7 HOH A 3 703 3 HOH HOH . O 7 HOH A 4 704 80 HOH HOH . O 7 HOH A 5 705 62 HOH HOH . O 7 HOH A 6 706 50 HOH HOH . O 7 HOH A 7 707 61 HOH HOH . O 7 HOH A 8 708 64 HOH HOH . O 7 HOH A 9 709 21 HOH HOH . O 7 HOH A 10 710 69 HOH HOH . O 7 HOH A 11 711 63 HOH HOH . O 7 HOH A 12 712 65 HOH HOH . O 7 HOH A 13 713 1 HOH HOH . O 7 HOH A 14 714 51 HOH HOH . O 7 HOH A 15 715 30 HOH HOH . O 7 HOH A 16 716 18 HOH HOH . O 7 HOH A 17 717 19 HOH HOH . O 7 HOH A 18 718 49 HOH HOH . O 7 HOH A 19 719 48 HOH HOH . O 7 HOH A 20 720 68 HOH HOH . O 7 HOH A 21 721 37 HOH HOH . O 7 HOH A 22 722 52 HOH HOH . O 7 HOH A 23 723 22 HOH HOH . O 7 HOH A 24 724 2 HOH HOH . O 7 HOH A 25 725 36 HOH HOH . O 7 HOH A 26 726 53 HOH HOH . O 7 HOH A 27 727 23 HOH HOH . O 7 HOH A 28 728 67 HOH HOH . O 7 HOH A 29 729 29 HOH HOH . O 7 HOH A 30 730 66 HOH HOH . O 7 HOH A 31 731 70 HOH HOH . O 7 HOH A 32 732 85 HOH HOH . P 7 HOH B 1 301 38 HOH HOH . P 7 HOH B 2 302 27 HOH HOH . P 7 HOH B 3 303 7 HOH HOH . P 7 HOH B 4 304 58 HOH HOH . P 7 HOH B 5 305 6 HOH HOH . P 7 HOH B 6 306 71 HOH HOH . P 7 HOH B 7 307 72 HOH HOH . P 7 HOH B 8 308 4 HOH HOH . Q 7 HOH C 1 701 74 HOH HOH . Q 7 HOH C 2 702 9 HOH HOH . Q 7 HOH C 3 703 77 HOH HOH . Q 7 HOH C 4 704 32 HOH HOH . Q 7 HOH C 5 705 33 HOH HOH . Q 7 HOH C 6 706 75 HOH HOH . Q 7 HOH C 7 707 8 HOH HOH . Q 7 HOH C 8 708 45 HOH HOH . Q 7 HOH C 9 709 76 HOH HOH . Q 7 HOH C 10 710 60 HOH HOH . Q 7 HOH C 11 711 56 HOH HOH . Q 7 HOH C 12 712 82 HOH HOH . Q 7 HOH C 13 713 31 HOH HOH . Q 7 HOH C 14 714 39 HOH HOH . Q 7 HOH C 15 715 10 HOH HOH . Q 7 HOH C 16 716 55 HOH HOH . Q 7 HOH C 17 717 26 HOH HOH . Q 7 HOH C 18 718 46 HOH HOH . Q 7 HOH C 19 719 81 HOH HOH . Q 7 HOH C 20 720 73 HOH HOH . Q 7 HOH C 21 721 44 HOH HOH . Q 7 HOH C 22 722 40 HOH HOH . Q 7 HOH C 23 723 43 HOH HOH . Q 7 HOH C 24 724 42 HOH HOH . Q 7 HOH C 25 725 41 HOH HOH . R 7 HOH D 1 301 11 HOH HOH . R 7 HOH D 2 302 47 HOH HOH . R 7 HOH D 3 303 83 HOH HOH . R 7 HOH D 4 304 57 HOH HOH . R 7 HOH D 5 305 13 HOH HOH . R 7 HOH D 6 306 59 HOH HOH . R 7 HOH D 7 307 20 HOH HOH . S 7 HOH E 1 501 78 HOH HOH . S 7 HOH E 2 502 79 HOH HOH . S 7 HOH E 3 503 84 HOH HOH . S 7 HOH E 4 504 17 HOH HOH . S 7 HOH E 5 505 24 HOH HOH . S 7 HOH E 6 506 12 HOH HOH . S 7 HOH E 7 507 54 HOH HOH . T 7 HOH F 1 501 28 HOH HOH . T 7 HOH F 2 502 25 HOH HOH . T 7 HOH F 3 503 34 HOH HOH . T 7 HOH F 4 504 16 HOH HOH . T 7 HOH F 5 505 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB C2Z . . . M 6 109.74 -84.729 40.573 1 94.83 ? OAB C2Z 401 F 1 HETATM 2 P PAO C2Z . . . M 6 110.189 -83.875 39.298 1 94.58 ? PAO C2Z 401 F 1 HETATM 3 O OAD C2Z . . . M 6 109.223 -82.768 39.129 1 94.5 ? OAD C2Z 401 F 1 HETATM 4 O OAA C2Z . . . M 6 116.348 -80.395 35.867 1 92.79 ? OAA C2Z 401 F 1 HETATM 5 C CAN C2Z . . . M 6 111.908 -83.512 39.438 1 94.19 ? CAN C2Z 401 F 1 HETATM 6 O OAJ C2Z . . . M 6 112.576 -82.712 38.612 1 94.1 ? OAJ C2Z 401 F 1 HETATM 7 C CAF C2Z . . . M 6 112.718 -83.99 40.381 1 93.93 ? CAF C2Z 401 F 1 HETATM 8 C CAE C2Z . . . M 6 113.931 -83.485 40.153 1 93.53 ? CAE C2Z 401 F 1 HETATM 9 C CAM C2Z . . . M 6 113.839 -82.704 39.076 1 93.62 ? CAM C2Z 401 F 1 HETATM 10 C CAL C2Z . . . M 6 114.837 -82.009 38.524 1 93.36 ? CAL C2Z 401 F 1 HETATM 11 C CAG C2Z . . . M 6 114.86 -81.613 37.252 1 93.34 ? CAG C2Z 401 F 1 HETATM 12 N NAH C2Z . . . M 6 115.925 -81.587 39.168 1 93.12 ? NAH C2Z 401 F 1 HETATM 13 O OAI C2Z . . . M 6 116.698 -80.888 38.221 1 92.9 ? OAI C2Z 401 F 1 HETATM 14 C CAK C2Z . . . M 6 115.991 -80.939 37.061 1 93 ? CAK C2Z 401 F 1 HETATM 15 O OAC C2Z . . . M 6 109.968 -84.936 38.112 1 94.95 ? OAC C2Z 401 F 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #