data_5EZV
#
_model_server_result.job_id            8o7lRocN3us6pCINWuSuaA 
_model_server_result.datetime_utc      '2024-11-22 05:31:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ezv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    5EZV 
#
_exptl.entry_id    5EZV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              466.531 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            STAUROSPORINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.16 
_cell.angle_gamma         90 
_cell.entry_id            5EZV 
_cell.length_a            75.608 
_cell.length_b            134.112 
_cell.length_c            141.287 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EZV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,K,L,O,P,S 1 1 
C,D,F,I,J,M,N,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OD2 ASP 180 A ASP 166 1_555 B NH2 ARG 256 B ARG 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? 
covale ? covale2 A C ARG 185 A ARG 171 1_555 A N TPO 186 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C TPO 186 A TPO 172 1_555 A N SER 187 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 B C ARG 107 B ARG 107 1_555 B N SEP 108 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 B C SEP 108 B SEP 108 1_555 B N HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 C C ARG 185 C ARG 171 1_555 C N TPO 186 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 C C TPO 186 C TPO 172 1_555 C N SER 187 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 D C ARG 107 D ARG 107 1_555 D N SEP 108 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale9 D C SEP 108 D SEP 108 1_555 D N HIS 109 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
#
_chem_comp.formula           'C28 H26 N4 O3' 
_chem_comp.formula_weight    466.531 
_chem_comp.id                STU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              STAUROSPORINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C25 STU sing 371 n n 
O4 C21 STU sing 372 n n 
C25 C24 STU sing 373 n n 
C25 N3 STU sing 374 n n 
C25 H25 STU sing 375 n n 
C24 C23 STU sing 376 n n 
C24 H241 STU sing 377 n n 
C24 H242 STU sing 378 n n 
C23 C22 STU sing 379 n n 
C23 N4 STU sing 380 n n 
C23 H23 STU sing 381 n n 
C22 C21 STU sing 382 n n 
C22 O6 STU sing 383 n n 
C22 H22 STU sing 384 n n 
C21 C26 STU sing 385 n n 
C21 N2 STU sing 386 n n 
C26 H261 STU sing 387 n n 
C26 H262 STU sing 388 n n 
C26 H263 STU sing 389 n n 
N2 C18 STU sing 390 n y 
N2 C17 STU sing 391 n y 
C18 C19 STU doub 392 n y 
C18 C11 STU sing 393 n y 
C19 C6 STU sing 394 n y 
C19 N3 STU sing 395 n y 
C6 C7 STU doub 396 n y 
C6 C5 STU sing 397 n y 
C7 C10 STU sing 398 n y 
C7 C8 STU sing 399 n n 
C10 C11 STU doub 400 n y 
C10 C9 STU sing 401 n n 
C11 C12 STU sing 402 n y 
C12 C17 STU doub 403 n y 
C12 C13 STU sing 404 n y 
C17 C16 STU sing 405 n y 
C16 C15 STU doub 406 n y 
C16 H16 STU sing 407 n n 
C15 C14 STU sing 408 n y 
C15 H15 STU sing 409 n n 
C14 C13 STU doub 410 n y 
C14 H14 STU sing 411 n n 
C13 H13 STU sing 412 n n 
C9 N1 STU sing 413 n n 
C9 H91 STU sing 414 n n 
C9 H92 STU sing 415 n n 
N1 C8 STU sing 416 n n 
N1 HN1 STU sing 417 n n 
C8 O5 STU doub 418 n n 
C5 C20 STU doub 419 n y 
C5 C4 STU sing 420 n y 
C20 C1 STU sing 421 n y 
C20 N3 STU sing 422 n y 
C1 C2 STU doub 423 n y 
C1 H1 STU sing 424 n n 
C2 C3 STU sing 425 n y 
C2 H2 STU sing 426 n n 
C3 C4 STU doub 427 n y 
C3 H3 STU sing 428 n n 
C4 H4 STU sing 429 n n 
O6 C27 STU sing 430 n n 
C27 H271 STU sing 431 n n 
C27 H272 STU sing 432 n n 
C27 H273 STU sing 433 n n 
N4 C28 STU sing 434 n n 
N4 HN4 STU sing 435 n n 
C28 H281 STU sing 436 n n 
C28 H282 STU sing 437 n n 
C28 H283 STU sing 438 n n 
#
_atom_sites.entry_id                     5EZV 
_atom_sites.fract_transf_matrix[1][1]    0.013226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00073 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007456 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 STU A 1 601 1552 STU STU . 
H 5 C1V A 1 602 1271 C1V C1V . 
I 4 STU C 1 601 1552 STU STU . 
J 5 C1V C 1 602 1553 C1V C1V . 
K 6 C2Z E 1 401 5 C2Z C2Z . 
L 6 C2Z E 1 402 6 C2Z C2Z . 
M 6 C2Z F 1 401 7 C2Z C2Z . 
N 6 C2Z F 1 402 8 C2Z C2Z . 
O 7 HOH A 1 701 35 HOH HOH . 
O 7 HOH A 2 702 5 HOH HOH . 
O 7 HOH A 3 703 3 HOH HOH . 
O 7 HOH A 4 704 80 HOH HOH . 
O 7 HOH A 5 705 62 HOH HOH . 
O 7 HOH A 6 706 50 HOH HOH . 
O 7 HOH A 7 707 61 HOH HOH . 
O 7 HOH A 8 708 64 HOH HOH . 
O 7 HOH A 9 709 21 HOH HOH . 
O 7 HOH A 10 710 69 HOH HOH . 
O 7 HOH A 11 711 63 HOH HOH . 
O 7 HOH A 12 712 65 HOH HOH . 
O 7 HOH A 13 713 1 HOH HOH . 
O 7 HOH A 14 714 51 HOH HOH . 
O 7 HOH A 15 715 30 HOH HOH . 
O 7 HOH A 16 716 18 HOH HOH . 
O 7 HOH A 17 717 19 HOH HOH . 
O 7 HOH A 18 718 49 HOH HOH . 
O 7 HOH A 19 719 48 HOH HOH . 
O 7 HOH A 20 720 68 HOH HOH . 
O 7 HOH A 21 721 37 HOH HOH . 
O 7 HOH A 22 722 52 HOH HOH . 
O 7 HOH A 23 723 22 HOH HOH . 
O 7 HOH A 24 724 2 HOH HOH . 
O 7 HOH A 25 725 36 HOH HOH . 
O 7 HOH A 26 726 53 HOH HOH . 
O 7 HOH A 27 727 23 HOH HOH . 
O 7 HOH A 28 728 67 HOH HOH . 
O 7 HOH A 29 729 29 HOH HOH . 
O 7 HOH A 30 730 66 HOH HOH . 
O 7 HOH A 31 731 70 HOH HOH . 
O 7 HOH A 32 732 85 HOH HOH . 
P 7 HOH B 1 301 38 HOH HOH . 
P 7 HOH B 2 302 27 HOH HOH . 
P 7 HOH B 3 303 7 HOH HOH . 
P 7 HOH B 4 304 58 HOH HOH . 
P 7 HOH B 5 305 6 HOH HOH . 
P 7 HOH B 6 306 71 HOH HOH . 
P 7 HOH B 7 307 72 HOH HOH . 
P 7 HOH B 8 308 4 HOH HOH . 
Q 7 HOH C 1 701 74 HOH HOH . 
Q 7 HOH C 2 702 9 HOH HOH . 
Q 7 HOH C 3 703 77 HOH HOH . 
Q 7 HOH C 4 704 32 HOH HOH . 
Q 7 HOH C 5 705 33 HOH HOH . 
Q 7 HOH C 6 706 75 HOH HOH . 
Q 7 HOH C 7 707 8 HOH HOH . 
Q 7 HOH C 8 708 45 HOH HOH . 
Q 7 HOH C 9 709 76 HOH HOH . 
Q 7 HOH C 10 710 60 HOH HOH . 
Q 7 HOH C 11 711 56 HOH HOH . 
Q 7 HOH C 12 712 82 HOH HOH . 
Q 7 HOH C 13 713 31 HOH HOH . 
Q 7 HOH C 14 714 39 HOH HOH . 
Q 7 HOH C 15 715 10 HOH HOH . 
Q 7 HOH C 16 716 55 HOH HOH . 
Q 7 HOH C 17 717 26 HOH HOH . 
Q 7 HOH C 18 718 46 HOH HOH . 
Q 7 HOH C 19 719 81 HOH HOH . 
Q 7 HOH C 20 720 73 HOH HOH . 
Q 7 HOH C 21 721 44 HOH HOH . 
Q 7 HOH C 22 722 40 HOH HOH . 
Q 7 HOH C 23 723 43 HOH HOH . 
Q 7 HOH C 24 724 42 HOH HOH . 
Q 7 HOH C 25 725 41 HOH HOH . 
R 7 HOH D 1 301 11 HOH HOH . 
R 7 HOH D 2 302 47 HOH HOH . 
R 7 HOH D 3 303 83 HOH HOH . 
R 7 HOH D 4 304 57 HOH HOH . 
R 7 HOH D 5 305 13 HOH HOH . 
R 7 HOH D 6 306 59 HOH HOH . 
R 7 HOH D 7 307 20 HOH HOH . 
S 7 HOH E 1 501 78 HOH HOH . 
S 7 HOH E 2 502 79 HOH HOH . 
S 7 HOH E 3 503 84 HOH HOH . 
S 7 HOH E 4 504 17 HOH HOH . 
S 7 HOH E 5 505 24 HOH HOH . 
S 7 HOH E 6 506 12 HOH HOH . 
S 7 HOH E 7 507 54 HOH HOH . 
T 7 HOH F 1 501 28 HOH HOH . 
T 7 HOH F 2 502 25 HOH HOH . 
T 7 HOH F 3 503 34 HOH HOH . 
T 7 HOH F 4 504 16 HOH HOH . 
T 7 HOH F 5 505 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 STU . . . G 4 128.057 -20.281 10.652 1 39.46 ? O4 STU 601 A 1 
HETATM 2 C C25 STU . . . G 4 128.94 -19.212 10.286 1 39.71 ? C25 STU 601 A 1 
HETATM 3 C C24 STU . . . G 4 129.355 -18.319 11.462 1 39.93 ? C24 STU 601 A 1 
HETATM 4 C C23 STU . . . G 4 128.651 -18.745 12.752 1 40.06 ? C23 STU 601 A 1 
HETATM 5 C C22 STU . . . G 4 127.143 -18.944 12.539 1 39.81 ? C22 STU 601 A 1 
HETATM 6 C C21 STU . . . G 4 126.879 -19.999 11.435 1 39.34 ? C21 STU 601 A 1 
HETATM 7 C C26 STU . . . G 4 126.664 -21.354 12.115 1 39.02 ? C26 STU 601 A 1 
HETATM 8 N N2 STU . . . G 4 125.743 -19.663 10.484 1 39.37 ? N2 STU 601 A 1 
HETATM 9 C C18 STU . . . G 4 125.898 -18.622 9.604 1 39.4 ? C18 STU 601 A 1 
HETATM 10 C C19 STU . . . G 4 127.088 -18.467 8.698 1 39.82 ? C19 STU 601 A 1 
HETATM 11 C C6 STU . . . G 4 126.94 -17.483 7.601 1 40.08 ? C6 STU 601 A 1 
HETATM 12 C C7 STU . . . G 4 125.667 -17.589 6.834 1 39.99 ? C7 STU 601 A 1 
HETATM 13 C C10 STU . . . G 4 124.436 -17.952 7.572 1 39.54 ? C10 STU 601 A 1 
HETATM 14 C C11 STU . . . G 4 124.556 -18.388 8.999 1 39.16 ? C11 STU 601 A 1 
HETATM 15 C C12 STU . . . G 4 123.641 -19.24 9.756 1 38.82 ? C12 STU 601 A 1 
HETATM 16 C C17 STU . . . G 4 124.429 -19.784 10.893 1 39.04 ? C17 STU 601 A 1 
HETATM 17 C C16 STU . . . G 4 123.704 -20.396 11.93 1 38.79 ? C16 STU 601 A 1 
HETATM 18 C C15 STU . . . G 4 122.303 -20.44 11.875 1 38.72 ? C15 STU 601 A 1 
HETATM 19 C C14 STU . . . G 4 121.586 -19.833 10.831 1 38.63 ? C14 STU 601 A 1 
HETATM 20 C C13 STU . . . G 4 122.251 -19.155 9.804 1 38.53 ? C13 STU 601 A 1 
HETATM 21 C C9 STU . . . G 4 123.286 -17.322 6.959 1 39.39 ? C9 STU 601 A 1 
HETATM 22 N N1 STU . . . G 4 123.867 -16.629 5.796 1 39.64 ? N1 STU 601 A 1 
HETATM 23 C C8 STU . . . G 4 125.182 -16.433 6.041 1 40.08 ? C8 STU 601 A 1 
HETATM 24 O O5 STU . . . G 4 125.842 -16.197 4.969 1 40.7 ? O5 STU 601 A 1 
HETATM 25 C C5 STU . . . G 4 128.304 -17.375 7.096 1 40.21 ? C5 STU 601 A 1 
HETATM 26 C C20 STU . . . G 4 129.189 -17.906 8.165 1 40.09 ? C20 STU 601 A 1 
HETATM 27 C C1 STU . . . G 4 130.569 -17.711 8.011 1 40.16 ? C1 STU 601 A 1 
HETATM 28 C C2 STU . . . G 4 131.052 -17.003 6.9 1 40.37 ? C2 STU 601 A 1 
HETATM 29 C C3 STU . . . G 4 130.182 -16.438 5.951 1 40.57 ? C3 STU 601 A 1 
HETATM 30 C C4 STU . . . G 4 128.792 -16.561 6.076 1 40.29 ? C4 STU 601 A 1 
HETATM 31 N N3 STU . . . G 4 128.385 -18.433 9.144 1 39.88 ? N3 STU 601 A 1 
HETATM 32 O O6 STU . . . G 4 126.538 -17.675 12.264 1 40.21 ? O6 STU 601 A 1 
HETATM 33 C C27 STU . . . G 4 125.487 -17.344 13.168 1 40.13 ? C27 STU 601 A 1 
HETATM 34 N N4 STU . . . G 4 128.949 -17.869 13.868 1 40.45 ? N4 STU 601 A 1 
HETATM 35 C C28 STU . . . G 4 129.279 -18.446 15.16 1 40.49 ? C28 STU 601 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          38 
_model_server_stats.element_count           35 
#