data_5EZV
#
_model_server_result.job_id            DM9tv4OU57cbDPkbzYxmFg 
_model_server_result.datetime_utc      '2024-11-06 15:33:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ezv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    5EZV 
#
_exptl.entry_id    5EZV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              360.386 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[4-(2-hydroxyphenyl)phenyl]-4-oxidanyl-6-oxidanylidene-7H-thieno[2,3-b]pyridine-5-carbonitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.16 
_cell.angle_gamma         90 
_cell.entry_id            5EZV 
_cell.length_a            75.608 
_cell.length_b            134.112 
_cell.length_c            141.287 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EZV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,K,L,O,P,S 1 1 
C,D,F,I,J,M,N,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OD2 ASP 180 A ASP 166 1_555 B NH2 ARG 256 B ARG 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? 
covale ? covale2 A C ARG 185 A ARG 171 1_555 A N TPO 186 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C TPO 186 A TPO 172 1_555 A N SER 187 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 B C ARG 107 B ARG 107 1_555 B N SEP 108 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 B C SEP 108 B SEP 108 1_555 B N HIS 109 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 C C ARG 185 C ARG 171 1_555 C N TPO 186 C TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 C C TPO 186 C TPO 172 1_555 C N SER 187 C SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 D C ARG 107 D ARG 107 1_555 D N SEP 108 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale9 D C SEP 108 D SEP 108 1_555 D N HIS 109 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
#
_chem_comp.formula           'C20 H12 N2 O3 S' 
_chem_comp.formula_weight    360.386 
_chem_comp.id                C1V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[4-(2-hydroxyphenyl)phenyl]-4-oxidanyl-6-oxidanylidene-7H-thieno[2,3-b]pyridine-5-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAD CAT C1V sing 70 n n 
CAT CAZ C1V sing 71 n n 
CAT CAU C1V doub 72 n n 
CAZ CAY C1V doub 73 n y 
CAZ CAW C1V sing 74 n y 
CAU CAE C1V sing 75 n n 
CAU CAX C1V sing 76 n n 
CAE NAA C1V trip 77 n n 
CAX OAB C1V doub 78 n n 
CAX NAO C1V sing 79 n n 
NAO CAY C1V sing 80 n n 
CAY SAP C1V sing 81 n y 
SAP CAN C1V sing 82 n y 
CAN CAW C1V doub 83 n y 
CAW CAS C1V sing 84 n n 
CAS CAL C1V sing 85 n y 
CAS CAK C1V doub 86 n y 
CAL CAJ C1V doub 87 n y 
CAJ CAR C1V sing 88 n y 
CAK CAI C1V sing 89 n y 
CAI CAR C1V doub 90 n y 
CAR CAV C1V sing 91 n n 
CAV CAM C1V sing 92 n y 
CAV CAQ C1V doub 93 n y 
CAM CAG C1V doub 94 n y 
CAG CAF C1V sing 95 n y 
CAF CAH C1V doub 96 n y 
CAH CAQ C1V sing 97 n y 
CAQ OAC C1V sing 98 n n 
OAD HAD C1V sing 99 n n 
NAO HAO C1V sing 100 n n 
CAN HAN C1V sing 101 n n 
CAL HAL C1V sing 102 n n 
CAK HAK C1V sing 103 n n 
CAJ HAJ C1V sing 104 n n 
CAI HAI C1V sing 105 n n 
CAM HAM C1V sing 106 n n 
CAG HAG C1V sing 107 n n 
CAF HAF C1V sing 108 n n 
CAH HAH C1V sing 109 n n 
OAC HAC C1V sing 110 n n 
#
_atom_sites.entry_id                     5EZV 
_atom_sites.fract_transf_matrix[1][1]    0.013226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00073 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007456 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 STU A 1 601 1552 STU STU . 
H 5 C1V A 1 602 1271 C1V C1V . 
I 4 STU C 1 601 1552 STU STU . 
J 5 C1V C 1 602 1553 C1V C1V . 
K 6 C2Z E 1 401 5 C2Z C2Z . 
L 6 C2Z E 1 402 6 C2Z C2Z . 
M 6 C2Z F 1 401 7 C2Z C2Z . 
N 6 C2Z F 1 402 8 C2Z C2Z . 
O 7 HOH A 1 701 35 HOH HOH . 
O 7 HOH A 2 702 5 HOH HOH . 
O 7 HOH A 3 703 3 HOH HOH . 
O 7 HOH A 4 704 80 HOH HOH . 
O 7 HOH A 5 705 62 HOH HOH . 
O 7 HOH A 6 706 50 HOH HOH . 
O 7 HOH A 7 707 61 HOH HOH . 
O 7 HOH A 8 708 64 HOH HOH . 
O 7 HOH A 9 709 21 HOH HOH . 
O 7 HOH A 10 710 69 HOH HOH . 
O 7 HOH A 11 711 63 HOH HOH . 
O 7 HOH A 12 712 65 HOH HOH . 
O 7 HOH A 13 713 1 HOH HOH . 
O 7 HOH A 14 714 51 HOH HOH . 
O 7 HOH A 15 715 30 HOH HOH . 
O 7 HOH A 16 716 18 HOH HOH . 
O 7 HOH A 17 717 19 HOH HOH . 
O 7 HOH A 18 718 49 HOH HOH . 
O 7 HOH A 19 719 48 HOH HOH . 
O 7 HOH A 20 720 68 HOH HOH . 
O 7 HOH A 21 721 37 HOH HOH . 
O 7 HOH A 22 722 52 HOH HOH . 
O 7 HOH A 23 723 22 HOH HOH . 
O 7 HOH A 24 724 2 HOH HOH . 
O 7 HOH A 25 725 36 HOH HOH . 
O 7 HOH A 26 726 53 HOH HOH . 
O 7 HOH A 27 727 23 HOH HOH . 
O 7 HOH A 28 728 67 HOH HOH . 
O 7 HOH A 29 729 29 HOH HOH . 
O 7 HOH A 30 730 66 HOH HOH . 
O 7 HOH A 31 731 70 HOH HOH . 
O 7 HOH A 32 732 85 HOH HOH . 
P 7 HOH B 1 301 38 HOH HOH . 
P 7 HOH B 2 302 27 HOH HOH . 
P 7 HOH B 3 303 7 HOH HOH . 
P 7 HOH B 4 304 58 HOH HOH . 
P 7 HOH B 5 305 6 HOH HOH . 
P 7 HOH B 6 306 71 HOH HOH . 
P 7 HOH B 7 307 72 HOH HOH . 
P 7 HOH B 8 308 4 HOH HOH . 
Q 7 HOH C 1 701 74 HOH HOH . 
Q 7 HOH C 2 702 9 HOH HOH . 
Q 7 HOH C 3 703 77 HOH HOH . 
Q 7 HOH C 4 704 32 HOH HOH . 
Q 7 HOH C 5 705 33 HOH HOH . 
Q 7 HOH C 6 706 75 HOH HOH . 
Q 7 HOH C 7 707 8 HOH HOH . 
Q 7 HOH C 8 708 45 HOH HOH . 
Q 7 HOH C 9 709 76 HOH HOH . 
Q 7 HOH C 10 710 60 HOH HOH . 
Q 7 HOH C 11 711 56 HOH HOH . 
Q 7 HOH C 12 712 82 HOH HOH . 
Q 7 HOH C 13 713 31 HOH HOH . 
Q 7 HOH C 14 714 39 HOH HOH . 
Q 7 HOH C 15 715 10 HOH HOH . 
Q 7 HOH C 16 716 55 HOH HOH . 
Q 7 HOH C 17 717 26 HOH HOH . 
Q 7 HOH C 18 718 46 HOH HOH . 
Q 7 HOH C 19 719 81 HOH HOH . 
Q 7 HOH C 20 720 73 HOH HOH . 
Q 7 HOH C 21 721 44 HOH HOH . 
Q 7 HOH C 22 722 40 HOH HOH . 
Q 7 HOH C 23 723 43 HOH HOH . 
Q 7 HOH C 24 724 42 HOH HOH . 
Q 7 HOH C 25 725 41 HOH HOH . 
R 7 HOH D 1 301 11 HOH HOH . 
R 7 HOH D 2 302 47 HOH HOH . 
R 7 HOH D 3 303 83 HOH HOH . 
R 7 HOH D 4 304 57 HOH HOH . 
R 7 HOH D 5 305 13 HOH HOH . 
R 7 HOH D 6 306 59 HOH HOH . 
R 7 HOH D 7 307 20 HOH HOH . 
S 7 HOH E 1 501 78 HOH HOH . 
S 7 HOH E 2 502 79 HOH HOH . 
S 7 HOH E 3 503 84 HOH HOH . 
S 7 HOH E 4 504 17 HOH HOH . 
S 7 HOH E 5 505 24 HOH HOH . 
S 7 HOH E 6 506 12 HOH HOH . 
S 7 HOH E 7 507 54 HOH HOH . 
T 7 HOH F 1 501 28 HOH HOH . 
T 7 HOH F 2 502 25 HOH HOH . 
T 7 HOH F 3 503 34 HOH HOH . 
T 7 HOH F 4 504 16 HOH HOH . 
T 7 HOH F 5 505 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAD C1V . . . J 5 162.614 -38.048 66.349 1 44.39 ? OAD C1V 602 C 1 
HETATM 2 C CAT C1V . . . J 5 161.429 -37.581 65.773 1 43.94 ? CAT C1V 602 C 1 
HETATM 3 C CAZ C1V . . . J 5 160.386 -36.989 66.576 1 43.34 ? CAZ C1V 602 C 1 
HETATM 4 C CAU C1V . . . J 5 161.229 -37.69 64.356 1 44.12 ? CAU C1V 602 C 1 
HETATM 5 C CAE C1V . . . J 5 162.301 -38.305 63.451 1 44.83 ? CAE C1V 602 C 1 
HETATM 6 N NAA C1V . . . J 5 163.375 -37.612 63.136 1 45.71 ? NAA C1V 602 C 1 
HETATM 7 C CAX C1V . . . J 5 160.015 -37.213 63.793 1 43.69 ? CAX C1V 602 C 1 
HETATM 8 O OAB C1V . . . J 5 159.777 -37.298 62.399 1 44.05 ? OAB C1V 602 C 1 
HETATM 9 N NAO C1V . . . J 5 159.076 -36.679 64.565 1 43.06 ? NAO C1V 602 C 1 
HETATM 10 C CAY C1V . . . J 5 159.229 -36.544 65.897 1 43.04 ? CAY C1V 602 C 1 
HETATM 11 S SAP C1V . . . J 5 158.153 -35.908 67.047 1 42.82 ? SAP C1V 602 C 1 
HETATM 12 C CAN C1V . . . J 5 159.08 -36.119 68.433 1 43.08 ? CAN C1V 602 C 1 
HETATM 13 C CAW C1V . . . J 5 160.282 -36.751 68.043 1 43.17 ? CAW C1V 602 C 1 
HETATM 14 C CAS C1V . . . J 5 161.359 -37.042 69.127 1 43.26 ? CAS C1V 602 C 1 
HETATM 15 C CAL C1V . . . J 5 160.986 -37.714 70.303 1 43.12 ? CAL C1V 602 C 1 
HETATM 16 C CAJ C1V . . . J 5 161.927 -37.92 71.328 1 43.62 ? CAJ C1V 602 C 1 
HETATM 17 C CAK C1V . . . J 5 162.651 -36.508 69.01 1 43.83 ? CAK C1V 602 C 1 
HETATM 18 C CAI C1V . . . J 5 163.603 -36.736 70.025 1 44.28 ? CAI C1V 602 C 1 
HETATM 19 C CAR C1V . . . J 5 163.244 -37.446 71.181 1 44.28 ? CAR C1V 602 C 1 
HETATM 20 C CAV C1V . . . J 5 164.265 -37.659 72.303 1 44.83 ? CAV C1V 602 C 1 
HETATM 21 C CAM C1V . . . J 5 164.837 -36.541 72.926 1 45.37 ? CAM C1V 602 C 1 
HETATM 22 C CAG C1V . . . J 5 165.767 -36.708 73.957 1 45.7 ? CAG C1V 602 C 1 
HETATM 23 C CAF C1V . . . J 5 166.123 -37.991 74.38 1 45.38 ? CAF C1V 602 C 1 
HETATM 24 C CAH C1V . . . J 5 165.552 -39.11 73.768 1 44.79 ? CAH C1V 602 C 1 
HETATM 25 C CAQ C1V . . . J 5 164.624 -38.946 72.735 1 44.67 ? CAQ C1V 602 C 1 
HETATM 26 O OAC C1V . . . J 5 164.06 -40.093 72.138 1 44.38 ? OAC C1V 602 C 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#