data_5EZZ # _model_server_result.job_id 7BnWs41AGm7CyDJJY9IO1Q _model_server_result.datetime_utc '2024-11-26 22:50:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ezz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5EZZ # _exptl.entry_id 5EZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EZZ _cell.length_a 102.67 _cell.length_b 102.67 _cell.length_c 170.12 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 160 A CYS 216 1_555 A SG CYS 364 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 222 A CYS 278 1_555 A SG CYS 387 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A O VAL 146 A VAL 202 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A O THR 149 A THR 205 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 A O HIS 186 A HIS 242 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 A O TYR 189 A TYR 245 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc5 D NA NA . A NA 503 1_555 F O HOH . A HOH 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc6 D NA NA . A NA 503 1_555 F O HOH . A HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc7 E NA NA . A NA 504 1_555 F O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc8 E NA NA . A NA 504 1_555 F O HOH . A HOH 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc9 E NA NA . A NA 504 1_555 F O HOH . A HOH 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EZZ _atom_sites.fract_transf_matrix[1][1] 0.00974 _atom_sites.fract_transf_matrix[1][2] 0.005623 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5T6 A 1 501 1 5T6 5T6 . C 3 DMS A 1 502 1 DMS DMS . D 4 NA A 1 503 1 NA NA . E 4 NA A 1 504 1 NA NA . F 5 HOH A 1 601 97 HOH HOH . F 5 HOH A 2 602 290 HOH HOH . F 5 HOH A 3 603 145 HOH HOH . F 5 HOH A 4 604 88 HOH HOH . F 5 HOH A 5 605 324 HOH HOH . F 5 HOH A 6 606 314 HOH HOH . F 5 HOH A 7 607 187 HOH HOH . F 5 HOH A 8 608 330 HOH HOH . F 5 HOH A 9 609 132 HOH HOH . F 5 HOH A 10 610 332 HOH HOH . F 5 HOH A 11 611 213 HOH HOH . F 5 HOH A 12 612 99 HOH HOH . F 5 HOH A 13 613 42 HOH HOH . F 5 HOH A 14 614 144 HOH HOH . F 5 HOH A 15 615 169 HOH HOH . F 5 HOH A 16 616 333 HOH HOH . F 5 HOH A 17 617 291 HOH HOH . F 5 HOH A 18 618 177 HOH HOH . F 5 HOH A 19 619 122 HOH HOH . F 5 HOH A 20 620 83 HOH HOH . F 5 HOH A 21 621 179 HOH HOH . F 5 HOH A 22 622 219 HOH HOH . F 5 HOH A 23 623 61 HOH HOH . F 5 HOH A 24 624 126 HOH HOH . F 5 HOH A 25 625 72 HOH HOH . F 5 HOH A 26 626 26 HOH HOH . F 5 HOH A 27 627 89 HOH HOH . F 5 HOH A 28 628 27 HOH HOH . F 5 HOH A 29 629 21 HOH HOH . F 5 HOH A 30 630 48 HOH HOH . F 5 HOH A 31 631 153 HOH HOH . F 5 HOH A 32 632 94 HOH HOH . F 5 HOH A 33 633 37 HOH HOH . F 5 HOH A 34 634 49 HOH HOH . F 5 HOH A 35 635 75 HOH HOH . F 5 HOH A 36 636 118 HOH HOH . F 5 HOH A 37 637 33 HOH HOH . F 5 HOH A 38 638 65 HOH HOH . F 5 HOH A 39 639 15 HOH HOH . F 5 HOH A 40 640 297 HOH HOH . F 5 HOH A 41 641 8 HOH HOH . F 5 HOH A 42 642 316 HOH HOH . F 5 HOH A 43 643 7 HOH HOH . F 5 HOH A 44 644 180 HOH HOH . F 5 HOH A 45 645 171 HOH HOH . F 5 HOH A 46 646 203 HOH HOH . F 5 HOH A 47 647 234 HOH HOH . F 5 HOH A 48 648 5 HOH HOH . F 5 HOH A 49 649 70 HOH HOH . F 5 HOH A 50 650 116 HOH HOH . F 5 HOH A 51 651 34 HOH HOH . F 5 HOH A 52 652 1 HOH HOH . F 5 HOH A 53 653 98 HOH HOH . F 5 HOH A 54 654 18 HOH HOH . F 5 HOH A 55 655 11 HOH HOH . F 5 HOH A 56 656 125 HOH HOH . F 5 HOH A 57 657 315 HOH HOH . F 5 HOH A 58 658 253 HOH HOH . F 5 HOH A 59 659 35 HOH HOH . F 5 HOH A 60 660 23 HOH HOH . F 5 HOH A 61 661 110 HOH HOH . F 5 HOH A 62 662 204 HOH HOH . F 5 HOH A 63 663 6 HOH HOH . F 5 HOH A 64 664 296 HOH HOH . F 5 HOH A 65 665 50 HOH HOH . F 5 HOH A 66 666 111 HOH HOH . F 5 HOH A 67 667 105 HOH HOH . F 5 HOH A 68 668 108 HOH HOH . F 5 HOH A 69 669 9 HOH HOH . F 5 HOH A 70 670 91 HOH HOH . F 5 HOH A 71 671 268 HOH HOH . F 5 HOH A 72 672 17 HOH HOH . F 5 HOH A 73 673 287 HOH HOH . F 5 HOH A 74 674 74 HOH HOH . F 5 HOH A 75 675 237 HOH HOH . F 5 HOH A 76 676 157 HOH HOH . F 5 HOH A 77 677 142 HOH HOH . F 5 HOH A 78 678 4 HOH HOH . F 5 HOH A 79 679 82 HOH HOH . F 5 HOH A 80 680 243 HOH HOH . F 5 HOH A 81 681 227 HOH HOH . F 5 HOH A 82 682 210 HOH HOH . F 5 HOH A 83 683 158 HOH HOH . F 5 HOH A 84 684 36 HOH HOH . F 5 HOH A 85 685 29 HOH HOH . F 5 HOH A 86 686 24 HOH HOH . F 5 HOH A 87 687 2 HOH HOH . F 5 HOH A 88 688 66 HOH HOH . F 5 HOH A 89 689 197 HOH HOH . F 5 HOH A 90 690 31 HOH HOH . F 5 HOH A 91 691 104 HOH HOH . F 5 HOH A 92 692 167 HOH HOH . F 5 HOH A 93 693 13 HOH HOH . F 5 HOH A 94 694 247 HOH HOH . F 5 HOH A 95 695 56 HOH HOH . F 5 HOH A 96 696 14 HOH HOH . F 5 HOH A 97 697 45 HOH HOH . F 5 HOH A 98 698 59 HOH HOH . F 5 HOH A 99 699 87 HOH HOH . F 5 HOH A 100 700 148 HOH HOH . F 5 HOH A 101 701 19 HOH HOH . F 5 HOH A 102 702 53 HOH HOH . F 5 HOH A 103 703 68 HOH HOH . F 5 HOH A 104 704 55 HOH HOH . F 5 HOH A 105 705 54 HOH HOH . F 5 HOH A 106 706 81 HOH HOH . F 5 HOH A 107 707 143 HOH HOH . F 5 HOH A 108 708 51 HOH HOH . F 5 HOH A 109 709 60 HOH HOH . F 5 HOH A 110 710 112 HOH HOH . F 5 HOH A 111 711 3 HOH HOH . F 5 HOH A 112 712 131 HOH HOH . F 5 HOH A 113 713 10 HOH HOH . F 5 HOH A 114 714 165 HOH HOH . F 5 HOH A 115 715 38 HOH HOH . F 5 HOH A 116 716 64 HOH HOH . F 5 HOH A 117 717 178 HOH HOH . F 5 HOH A 118 718 85 HOH HOH . F 5 HOH A 119 719 25 HOH HOH . F 5 HOH A 120 720 16 HOH HOH . F 5 HOH A 121 721 79 HOH HOH . F 5 HOH A 122 722 130 HOH HOH . F 5 HOH A 123 723 71 HOH HOH . F 5 HOH A 124 724 133 HOH HOH . F 5 HOH A 125 725 137 HOH HOH . F 5 HOH A 126 726 150 HOH HOH . F 5 HOH A 127 727 121 HOH HOH . F 5 HOH A 128 728 73 HOH HOH . F 5 HOH A 129 729 146 HOH HOH . F 5 HOH A 130 730 317 HOH HOH . F 5 HOH A 131 731 284 HOH HOH . F 5 HOH A 132 732 139 HOH HOH . F 5 HOH A 133 733 57 HOH HOH . F 5 HOH A 134 734 181 HOH HOH . F 5 HOH A 135 735 154 HOH HOH . F 5 HOH A 136 736 323 HOH HOH . F 5 HOH A 137 737 69 HOH HOH . F 5 HOH A 138 738 109 HOH HOH . F 5 HOH A 139 739 67 HOH HOH . F 5 HOH A 140 740 335 HOH HOH . F 5 HOH A 141 741 30 HOH HOH . F 5 HOH A 142 742 229 HOH HOH . F 5 HOH A 143 743 207 HOH HOH . F 5 HOH A 144 744 117 HOH HOH . F 5 HOH A 145 745 58 HOH HOH . F 5 HOH A 146 746 44 HOH HOH . F 5 HOH A 147 747 46 HOH HOH . F 5 HOH A 148 748 223 HOH HOH . F 5 HOH A 149 749 100 HOH HOH . F 5 HOH A 150 750 259 HOH HOH . F 5 HOH A 151 751 32 HOH HOH . F 5 HOH A 152 752 136 HOH HOH . F 5 HOH A 153 753 303 HOH HOH . F 5 HOH A 154 754 186 HOH HOH . F 5 HOH A 155 755 295 HOH HOH . F 5 HOH A 156 756 138 HOH HOH . F 5 HOH A 157 757 12 HOH HOH . F 5 HOH A 158 758 86 HOH HOH . F 5 HOH A 159 759 159 HOH HOH . F 5 HOH A 160 760 182 HOH HOH . F 5 HOH A 161 761 221 HOH HOH . F 5 HOH A 162 762 40 HOH HOH . F 5 HOH A 163 763 183 HOH HOH . F 5 HOH A 164 764 236 HOH HOH . F 5 HOH A 165 765 294 HOH HOH . F 5 HOH A 166 766 119 HOH HOH . F 5 HOH A 167 767 114 HOH HOH . F 5 HOH A 168 768 52 HOH HOH . F 5 HOH A 169 769 20 HOH HOH . F 5 HOH A 170 770 96 HOH HOH . F 5 HOH A 171 771 193 HOH HOH . F 5 HOH A 172 772 102 HOH HOH . F 5 HOH A 173 773 95 HOH HOH . F 5 HOH A 174 774 84 HOH HOH . F 5 HOH A 175 775 28 HOH HOH . F 5 HOH A 176 776 120 HOH HOH . F 5 HOH A 177 777 188 HOH HOH . F 5 HOH A 178 778 115 HOH HOH . F 5 HOH A 179 779 321 HOH HOH . F 5 HOH A 180 780 194 HOH HOH . F 5 HOH A 181 781 63 HOH HOH . F 5 HOH A 182 782 80 HOH HOH . F 5 HOH A 183 783 273 HOH HOH . F 5 HOH A 184 784 151 HOH HOH . F 5 HOH A 185 785 231 HOH HOH . F 5 HOH A 186 786 308 HOH HOH . F 5 HOH A 187 787 161 HOH HOH . F 5 HOH A 188 788 155 HOH HOH . F 5 HOH A 189 789 147 HOH HOH . F 5 HOH A 190 790 22 HOH HOH . F 5 HOH A 191 791 90 HOH HOH . F 5 HOH A 192 792 103 HOH HOH . F 5 HOH A 193 793 275 HOH HOH . F 5 HOH A 194 794 127 HOH HOH . F 5 HOH A 195 795 232 HOH HOH . F 5 HOH A 196 796 184 HOH HOH . F 5 HOH A 197 797 47 HOH HOH . F 5 HOH A 198 798 244 HOH HOH . F 5 HOH A 199 799 164 HOH HOH . F 5 HOH A 200 800 304 HOH HOH . F 5 HOH A 201 801 101 HOH HOH . F 5 HOH A 202 802 272 HOH HOH . F 5 HOH A 203 803 225 HOH HOH . F 5 HOH A 204 804 175 HOH HOH . F 5 HOH A 205 805 152 HOH HOH . F 5 HOH A 206 806 173 HOH HOH . F 5 HOH A 207 807 162 HOH HOH . F 5 HOH A 208 808 172 HOH HOH . F 5 HOH A 209 809 39 HOH HOH . F 5 HOH A 210 810 113 HOH HOH . F 5 HOH A 211 811 92 HOH HOH . F 5 HOH A 212 812 76 HOH HOH . F 5 HOH A 213 813 279 HOH HOH . F 5 HOH A 214 814 276 HOH HOH . F 5 HOH A 215 815 93 HOH HOH . F 5 HOH A 216 816 124 HOH HOH . F 5 HOH A 217 817 156 HOH HOH . F 5 HOH A 218 818 215 HOH HOH . F 5 HOH A 219 819 43 HOH HOH . F 5 HOH A 220 820 174 HOH HOH . F 5 HOH A 221 821 302 HOH HOH . F 5 HOH A 222 822 254 HOH HOH . F 5 HOH A 223 823 217 HOH HOH . F 5 HOH A 224 824 325 HOH HOH . F 5 HOH A 225 825 200 HOH HOH . F 5 HOH A 226 826 185 HOH HOH . F 5 HOH A 227 827 226 HOH HOH . F 5 HOH A 228 828 283 HOH HOH . F 5 HOH A 229 829 140 HOH HOH . F 5 HOH A 230 830 309 HOH HOH . F 5 HOH A 231 831 62 HOH HOH . F 5 HOH A 232 832 129 HOH HOH . F 5 HOH A 233 833 134 HOH HOH . F 5 HOH A 234 834 298 HOH HOH . F 5 HOH A 235 835 106 HOH HOH . F 5 HOH A 236 836 258 HOH HOH . F 5 HOH A 237 837 336 HOH HOH . F 5 HOH A 238 838 107 HOH HOH . F 5 HOH A 239 839 281 HOH HOH . F 5 HOH A 240 840 238 HOH HOH . F 5 HOH A 241 841 212 HOH HOH . F 5 HOH A 242 842 337 HOH HOH . F 5 HOH A 243 843 230 HOH HOH . F 5 HOH A 244 844 233 HOH HOH . F 5 HOH A 245 845 264 HOH HOH . F 5 HOH A 246 846 135 HOH HOH . F 5 HOH A 247 847 270 HOH HOH . F 5 HOH A 248 848 300 HOH HOH . F 5 HOH A 249 849 77 HOH HOH . F 5 HOH A 250 850 251 HOH HOH . F 5 HOH A 251 851 224 HOH HOH . F 5 HOH A 252 852 263 HOH HOH . F 5 HOH A 253 853 305 HOH HOH . F 5 HOH A 254 854 260 HOH HOH . F 5 HOH A 255 855 168 HOH HOH . F 5 HOH A 256 856 262 HOH HOH . F 5 HOH A 257 857 214 HOH HOH . F 5 HOH A 258 858 246 HOH HOH . F 5 HOH A 259 859 280 HOH HOH . F 5 HOH A 260 860 176 HOH HOH . F 5 HOH A 261 861 195 HOH HOH . F 5 HOH A 262 862 274 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -4.502 _atom_site.Cartn_y 18.975 _atom_site.Cartn_z 80.005 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #