data_5F02 # _model_server_result.job_id p0OtWRPXhs9zvyuN6GE1iA _model_server_result.datetime_utc '2024-12-10 07:12:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5F02 # _exptl.entry_id 5F02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F02 _cell.length_a 45.937 _cell.length_b 57.492 _cell.length_c 75.691 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf3 A SG CYS 156 A CYS 156 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 C C11 5T9 . A 5T9 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 200 n n C1 C2 GOL sing 201 n n C1 H11 GOL sing 202 n n C1 H12 GOL sing 203 n n O1 HO1 GOL sing 204 n n C2 O2 GOL sing 205 n n C2 C3 GOL sing 206 n n C2 H2 GOL sing 207 n n O2 HO2 GOL sing 208 n n C3 O3 GOL sing 209 n n C3 H31 GOL sing 210 n n C3 H32 GOL sing 211 n n O3 HO3 GOL sing 212 n n # _atom_sites.entry_id 5F02 _atom_sites.fract_transf_matrix[1][1] 0.021769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 5T9 A 1 302 1 5T9 UNL . D 4 HOH A 1 401 207 HOH HOH . D 4 HOH A 2 402 186 HOH HOH . D 4 HOH A 3 403 47 HOH HOH . D 4 HOH A 4 404 125 HOH HOH . D 4 HOH A 5 405 70 HOH HOH . D 4 HOH A 6 406 213 HOH HOH . D 4 HOH A 7 407 86 HOH HOH . D 4 HOH A 8 408 204 HOH HOH . D 4 HOH A 9 409 71 HOH HOH . D 4 HOH A 10 410 51 HOH HOH . D 4 HOH A 11 411 78 HOH HOH . D 4 HOH A 12 412 220 HOH HOH . D 4 HOH A 13 413 179 HOH HOH . D 4 HOH A 14 414 163 HOH HOH . D 4 HOH A 15 415 39 HOH HOH . D 4 HOH A 16 416 20 HOH HOH . D 4 HOH A 17 417 185 HOH HOH . D 4 HOH A 18 418 118 HOH HOH . D 4 HOH A 19 419 224 HOH HOH . D 4 HOH A 20 420 205 HOH HOH . D 4 HOH A 21 421 21 HOH HOH . D 4 HOH A 22 422 115 HOH HOH . D 4 HOH A 23 423 18 HOH HOH . D 4 HOH A 24 424 191 HOH HOH . D 4 HOH A 25 425 40 HOH HOH . D 4 HOH A 26 426 147 HOH HOH . D 4 HOH A 27 427 148 HOH HOH . D 4 HOH A 28 428 210 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 80 HOH HOH . D 4 HOH A 31 431 28 HOH HOH . D 4 HOH A 32 432 173 HOH HOH . D 4 HOH A 33 433 183 HOH HOH . D 4 HOH A 34 434 201 HOH HOH . D 4 HOH A 35 435 46 HOH HOH . D 4 HOH A 36 436 72 HOH HOH . D 4 HOH A 37 437 128 HOH HOH . D 4 HOH A 38 438 57 HOH HOH . D 4 HOH A 39 439 91 HOH HOH . D 4 HOH A 40 440 133 HOH HOH . D 4 HOH A 41 441 77 HOH HOH . D 4 HOH A 42 442 34 HOH HOH . D 4 HOH A 43 443 145 HOH HOH . D 4 HOH A 44 444 134 HOH HOH . D 4 HOH A 45 445 81 HOH HOH . D 4 HOH A 46 446 25 HOH HOH . D 4 HOH A 47 447 124 HOH HOH . D 4 HOH A 48 448 42 HOH HOH . D 4 HOH A 49 449 184 HOH HOH . D 4 HOH A 50 450 30 HOH HOH . D 4 HOH A 51 451 209 HOH HOH . D 4 HOH A 52 452 17 HOH HOH . D 4 HOH A 53 453 24 HOH HOH . D 4 HOH A 54 454 190 HOH HOH . D 4 HOH A 55 455 35 HOH HOH . D 4 HOH A 56 456 7 HOH HOH . D 4 HOH A 57 457 9 HOH HOH . D 4 HOH A 58 458 158 HOH HOH . D 4 HOH A 59 459 198 HOH HOH . D 4 HOH A 60 460 177 HOH HOH . D 4 HOH A 61 461 2 HOH HOH . D 4 HOH A 62 462 4 HOH HOH . D 4 HOH A 63 463 114 HOH HOH . D 4 HOH A 64 464 121 HOH HOH . D 4 HOH A 65 465 12 HOH HOH . D 4 HOH A 66 466 76 HOH HOH . D 4 HOH A 67 467 16 HOH HOH . D 4 HOH A 68 468 178 HOH HOH . D 4 HOH A 69 469 63 HOH HOH . D 4 HOH A 70 470 129 HOH HOH . D 4 HOH A 71 471 10 HOH HOH . D 4 HOH A 72 472 13 HOH HOH . D 4 HOH A 73 473 206 HOH HOH . D 4 HOH A 74 474 75 HOH HOH . D 4 HOH A 75 475 6 HOH HOH . D 4 HOH A 76 476 22 HOH HOH . D 4 HOH A 77 477 104 HOH HOH . D 4 HOH A 78 478 222 HOH HOH . D 4 HOH A 79 479 155 HOH HOH . D 4 HOH A 80 480 139 HOH HOH . D 4 HOH A 81 481 94 HOH HOH . D 4 HOH A 82 482 62 HOH HOH . D 4 HOH A 83 483 5 HOH HOH . D 4 HOH A 84 484 68 HOH HOH . D 4 HOH A 85 485 122 HOH HOH . D 4 HOH A 86 486 187 HOH HOH . D 4 HOH A 87 487 19 HOH HOH . D 4 HOH A 88 488 150 HOH HOH . D 4 HOH A 89 489 180 HOH HOH . D 4 HOH A 90 490 200 HOH HOH . D 4 HOH A 91 491 59 HOH HOH . D 4 HOH A 92 492 8 HOH HOH . D 4 HOH A 93 493 52 HOH HOH . D 4 HOH A 94 494 101 HOH HOH . D 4 HOH A 95 495 123 HOH HOH . D 4 HOH A 96 496 119 HOH HOH . D 4 HOH A 97 497 67 HOH HOH . D 4 HOH A 98 498 26 HOH HOH . D 4 HOH A 99 499 64 HOH HOH . D 4 HOH A 100 500 98 HOH HOH . D 4 HOH A 101 501 144 HOH HOH . D 4 HOH A 102 502 131 HOH HOH . D 4 HOH A 103 503 153 HOH HOH . D 4 HOH A 104 504 38 HOH HOH . D 4 HOH A 105 505 96 HOH HOH . D 4 HOH A 106 506 226 HOH HOH . D 4 HOH A 107 507 53 HOH HOH . D 4 HOH A 108 508 14 HOH HOH . D 4 HOH A 109 509 154 HOH HOH . D 4 HOH A 110 510 88 HOH HOH . D 4 HOH A 111 511 160 HOH HOH . D 4 HOH A 112 512 164 HOH HOH . D 4 HOH A 113 513 82 HOH HOH . D 4 HOH A 114 514 167 HOH HOH . D 4 HOH A 115 515 202 HOH HOH . D 4 HOH A 116 516 146 HOH HOH . D 4 HOH A 117 517 33 HOH HOH . D 4 HOH A 118 518 223 HOH HOH . D 4 HOH A 119 519 172 HOH HOH . D 4 HOH A 120 520 127 HOH HOH . D 4 HOH A 121 521 11 HOH HOH . D 4 HOH A 122 522 89 HOH HOH . D 4 HOH A 123 523 170 HOH HOH . D 4 HOH A 124 524 105 HOH HOH . D 4 HOH A 125 525 211 HOH HOH . D 4 HOH A 126 526 182 HOH HOH . D 4 HOH A 127 527 141 HOH HOH . D 4 HOH A 128 528 132 HOH HOH . D 4 HOH A 129 529 219 HOH HOH . D 4 HOH A 130 530 143 HOH HOH . D 4 HOH A 131 531 111 HOH HOH . D 4 HOH A 132 532 55 HOH HOH . D 4 HOH A 133 533 196 HOH HOH . D 4 HOH A 134 534 137 HOH HOH . D 4 HOH A 135 535 36 HOH HOH . D 4 HOH A 136 536 50 HOH HOH . D 4 HOH A 137 537 151 HOH HOH . D 4 HOH A 138 538 48 HOH HOH . D 4 HOH A 139 539 79 HOH HOH . D 4 HOH A 140 540 120 HOH HOH . D 4 HOH A 141 541 29 HOH HOH . D 4 HOH A 142 542 126 HOH HOH . D 4 HOH A 143 543 84 HOH HOH . D 4 HOH A 144 544 225 HOH HOH . D 4 HOH A 145 545 138 HOH HOH . D 4 HOH A 146 546 130 HOH HOH . D 4 HOH A 147 547 116 HOH HOH . D 4 HOH A 148 548 44 HOH HOH . D 4 HOH A 149 549 61 HOH HOH . D 4 HOH A 150 550 176 HOH HOH . D 4 HOH A 151 551 65 HOH HOH . D 4 HOH A 152 552 117 HOH HOH . D 4 HOH A 153 553 142 HOH HOH . D 4 HOH A 154 554 103 HOH HOH . D 4 HOH A 155 555 192 HOH HOH . D 4 HOH A 156 556 175 HOH HOH . D 4 HOH A 157 557 113 HOH HOH . D 4 HOH A 158 558 203 HOH HOH . D 4 HOH A 159 559 215 HOH HOH . D 4 HOH A 160 560 43 HOH HOH . D 4 HOH A 161 561 15 HOH HOH . D 4 HOH A 162 562 174 HOH HOH . D 4 HOH A 163 563 189 HOH HOH . D 4 HOH A 164 564 108 HOH HOH . D 4 HOH A 165 565 112 HOH HOH . D 4 HOH A 166 566 217 HOH HOH . D 4 HOH A 167 567 169 HOH HOH . D 4 HOH A 168 568 56 HOH HOH . D 4 HOH A 169 569 3 HOH HOH . D 4 HOH A 170 570 199 HOH HOH . D 4 HOH A 171 571 156 HOH HOH . D 4 HOH A 172 572 100 HOH HOH . D 4 HOH A 173 573 216 HOH HOH . D 4 HOH A 174 574 214 HOH HOH . D 4 HOH A 175 575 102 HOH HOH . D 4 HOH A 176 576 162 HOH HOH . D 4 HOH A 177 577 106 HOH HOH . D 4 HOH A 178 578 194 HOH HOH . D 4 HOH A 179 579 221 HOH HOH . D 4 HOH A 180 580 49 HOH HOH . D 4 HOH A 181 581 93 HOH HOH . D 4 HOH A 182 582 227 HOH HOH . D 4 HOH A 183 583 159 HOH HOH . D 4 HOH A 184 584 157 HOH HOH . D 4 HOH A 185 585 109 HOH HOH . D 4 HOH A 186 586 97 HOH HOH . D 4 HOH A 187 587 73 HOH HOH . D 4 HOH A 188 588 74 HOH HOH . D 4 HOH A 189 589 181 HOH HOH . D 4 HOH A 190 590 149 HOH HOH . D 4 HOH A 191 591 136 HOH HOH . D 4 HOH A 192 592 95 HOH HOH . D 4 HOH A 193 593 87 HOH HOH . D 4 HOH A 194 594 193 HOH HOH . D 4 HOH A 195 595 165 HOH HOH . D 4 HOH A 196 596 161 HOH HOH . D 4 HOH A 197 597 140 HOH HOH . D 4 HOH A 198 598 27 HOH HOH . D 4 HOH A 199 599 195 HOH HOH . D 4 HOH A 200 600 69 HOH HOH . D 4 HOH A 201 601 168 HOH HOH . D 4 HOH A 202 602 54 HOH HOH . D 4 HOH A 203 603 90 HOH HOH . D 4 HOH A 204 604 218 HOH HOH . D 4 HOH A 205 605 212 HOH HOH . D 4 HOH A 206 606 92 HOH HOH . D 4 HOH A 207 607 107 HOH HOH . D 4 HOH A 208 608 110 HOH HOH . D 4 HOH A 209 609 85 HOH HOH . D 4 HOH A 210 610 197 HOH HOH . D 4 HOH A 211 611 152 HOH HOH . D 4 HOH A 212 612 188 HOH HOH . D 4 HOH A 213 613 58 HOH HOH . D 4 HOH A 214 614 45 HOH HOH . D 4 HOH A 215 615 99 HOH HOH . D 4 HOH A 216 616 60 HOH HOH . D 4 HOH A 217 617 37 HOH HOH . D 4 HOH A 218 618 171 HOH HOH . D 4 HOH A 219 619 208 HOH HOH . D 4 HOH A 220 620 41 HOH HOH . D 4 HOH A 221 621 66 HOH HOH . D 4 HOH A 222 622 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 4.754 37.793 34.06 0.5 31.19 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 4.752 38.162 35.428 0.5 29.38 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 4.421 39.01 33.221 0.5 35.43 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 4.863 38.768 31.883 0.5 36.48 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 2.925 39.314 33.231 0.5 38.04 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 2.714 40.695 32.888 0.5 40.51 ? O3 GOL 301 A 1 HETATM 7 H H11 GOL . . . B 2 5.74 37.416 33.78 0.5 29.85 ? H11 GOL 301 A 1 HETATM 8 H H12 GOL . . . B 2 4.021 37.004 33.884 0.5 31.6 ? H12 GOL 301 A 1 HETATM 9 H H2 GOL . . . B 2 4.938 39.874 33.653 0.5 32.21 ? H2 GOL 301 A 1 HETATM 10 H H31 GOL . . . B 2 2.412 38.671 32.514 0.5 37.61 ? H31 GOL 301 A 1 HETATM 11 H H32 GOL . . . B 2 2.517 39.115 34.224 0.5 37.66 ? H32 GOL 301 A 1 HETATM 12 H HO3 GOL . . . B 2 3.174 41.259 33.525 0.5 40.87 ? HO3 GOL 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #