data_5F04 # _model_server_result.job_id RrJJb58ckNKBx7VQavVJRA _model_server_result.datetime_utc '2025-01-25 07:37:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5F04 # _exptl.entry_id 5F04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F04 _cell.length_a 121.79 _cell.length_b 121.79 _cell.length_c 33.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 127 n n C1 C2 EDO sing 128 n n C1 H11 EDO sing 129 n n C1 H12 EDO sing 130 n n O1 HO1 EDO sing 131 n n C2 O2 EDO sing 132 n n C2 H21 EDO sing 133 n n C2 H22 EDO sing 134 n n O2 HO2 EDO sing 135 n n # _atom_sites.entry_id 5F04 _atom_sites.fract_transf_matrix[1][1] 0.008211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5TB A 1 301 1 5TB 173 . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 3 SO4 SO4 . E 4 GOL A 1 304 1 GOL GOL . F 5 EDO A 1 305 1 EDO EDO . G 6 HOH A 1 401 73 HOH HOH . G 6 HOH A 2 402 51 HOH HOH . G 6 HOH A 3 403 23 HOH HOH . G 6 HOH A 4 404 19 HOH HOH . G 6 HOH A 5 405 22 HOH HOH . G 6 HOH A 6 406 18 HOH HOH . G 6 HOH A 7 407 14 HOH HOH . G 6 HOH A 8 408 32 HOH HOH . G 6 HOH A 9 409 12 HOH HOH . G 6 HOH A 10 410 33 HOH HOH . G 6 HOH A 11 411 13 HOH HOH . G 6 HOH A 12 412 10 HOH HOH . G 6 HOH A 13 413 31 HOH HOH . G 6 HOH A 14 414 7 HOH HOH . G 6 HOH A 15 415 1 HOH HOH . G 6 HOH A 16 416 36 HOH HOH . G 6 HOH A 17 417 24 HOH HOH . G 6 HOH A 18 418 3 HOH HOH . G 6 HOH A 19 419 69 HOH HOH . G 6 HOH A 20 420 25 HOH HOH . G 6 HOH A 21 421 20 HOH HOH . G 6 HOH A 22 422 28 HOH HOH . G 6 HOH A 23 423 8 HOH HOH . G 6 HOH A 24 424 49 HOH HOH . G 6 HOH A 25 425 4 HOH HOH . G 6 HOH A 26 426 35 HOH HOH . G 6 HOH A 27 427 2 HOH HOH . G 6 HOH A 28 428 21 HOH HOH . G 6 HOH A 29 429 37 HOH HOH . G 6 HOH A 30 430 34 HOH HOH . G 6 HOH A 31 431 40 HOH HOH . G 6 HOH A 32 432 57 HOH HOH . G 6 HOH A 33 433 17 HOH HOH . G 6 HOH A 34 434 15 HOH HOH . G 6 HOH A 35 435 5 HOH HOH . G 6 HOH A 36 436 9 HOH HOH . G 6 HOH A 37 437 43 HOH HOH . G 6 HOH A 38 438 39 HOH HOH . G 6 HOH A 39 439 11 HOH HOH . G 6 HOH A 40 440 67 HOH HOH . G 6 HOH A 41 441 60 HOH HOH . G 6 HOH A 42 442 44 HOH HOH . G 6 HOH A 43 443 6 HOH HOH . G 6 HOH A 44 444 42 HOH HOH . G 6 HOH A 45 445 16 HOH HOH . G 6 HOH A 46 446 38 HOH HOH . G 6 HOH A 47 447 26 HOH HOH . G 6 HOH A 48 448 58 HOH HOH . G 6 HOH A 49 449 41 HOH HOH . G 6 HOH A 50 450 30 HOH HOH . G 6 HOH A 51 451 61 HOH HOH . G 6 HOH A 52 452 72 HOH HOH . G 6 HOH A 53 453 62 HOH HOH . G 6 HOH A 54 454 66 HOH HOH . G 6 HOH A 55 455 63 HOH HOH . G 6 HOH A 56 456 70 HOH HOH . G 6 HOH A 57 457 56 HOH HOH . G 6 HOH A 58 458 64 HOH HOH . G 6 HOH A 59 459 52 HOH HOH . G 6 HOH A 60 460 48 HOH HOH . G 6 HOH A 61 461 54 HOH HOH . G 6 HOH A 62 462 47 HOH HOH . G 6 HOH A 63 463 50 HOH HOH . G 6 HOH A 64 464 59 HOH HOH . G 6 HOH A 65 465 71 HOH HOH . G 6 HOH A 66 466 46 HOH HOH . G 6 HOH A 67 467 53 HOH HOH . G 6 HOH A 68 468 29 HOH HOH . G 6 HOH A 69 469 45 HOH HOH . G 6 HOH A 70 470 65 HOH HOH . G 6 HOH A 71 471 27 HOH HOH . G 6 HOH A 72 472 68 HOH HOH . G 6 HOH A 73 473 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 39.603 30.956 6.22 1 49.54 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 5 39.765 29.535 6.225 1 49.6 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 5 40.155 31.496 4.913 1 52.92 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 5 41.302 30.72 4.546 1 50.73 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #