data_5F08 # _model_server_result.job_id 1ZqmYaCTnSj5Iq2dYZZJ2w _model_server_result.datetime_utc '2024-10-20 03:55:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5F08 # _exptl.entry_id 5F08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.595 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{tert}-butyl ~{N}-methyl-~{N}-[[4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]phenyl]methyl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F08 _cell.length_a 120.68 _cell.length_b 120.68 _cell.length_c 33.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H39 N3 O3' _chem_comp.formula_weight 429.595 _chem_comp.id 5TG _chem_comp.mon_nstd_flag . _chem_comp.name '~{tert}-butyl ~{N}-methyl-~{N}-[[4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]phenyl]methyl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 N1 5TG sing 1 n n C9 C8 5TG sing 2 n n C17 C16 5TG doub 3 n y C17 C12 5TG sing 4 n y C16 C15 5TG sing 5 n y N1 C12 5TG sing 6 n n N1 C10 5TG sing 7 n n C12 C13 5TG doub 8 n y C15 C18 5TG sing 9 n n C15 C14 5TG doub 10 n y C8 C7 5TG sing 11 n n C13 C14 5TG sing 12 n y C10 C11 5TG sing 13 n n C7 C11 5TG sing 14 n n C7 C6 5TG sing 15 n n C3 C2 5TG sing 16 n n C3 N 5TG sing 17 n n C2 C1 5TG sing 18 n n C5 C6 5TG sing 19 n n C5 C4 5TG sing 20 n n N C4 5TG sing 21 n n N C 5TG sing 22 n n C1 C 5TG sing 23 n n C4 O2 5TG doub 24 n n C H1 5TG sing 25 n n C H2 5TG sing 26 n n C3 H3 5TG sing 27 n n C3 H4 5TG sing 28 n n C2 H5 5TG sing 29 n n C2 H6 5TG sing 30 n n C1 H7 5TG sing 31 n n C1 H8 5TG sing 32 n n C5 H9 5TG sing 33 n n C5 H10 5TG sing 34 n n C6 H11 5TG sing 35 n n C6 H12 5TG sing 36 n n C7 H13 5TG sing 37 n n C11 H14 5TG sing 38 n n C11 H15 5TG sing 39 n n C10 H16 5TG sing 40 n n C10 H17 5TG sing 41 n n C9 H18 5TG sing 42 n n C9 H19 5TG sing 43 n n C8 H20 5TG sing 44 n n C8 H21 5TG sing 45 n n C17 H22 5TG sing 46 n n C16 H23 5TG sing 47 n n C14 H24 5TG sing 48 n n C13 H25 5TG sing 49 n n C18 H26 5TG sing 50 n n C18 H27 5TG sing 51 n n C18 N2 5TG sing 52 n n N2 C20 5TG sing 53 n n N2 C19 5TG sing 54 n n C20 O3 5TG sing 55 n n O3 C22 5TG sing 56 n n C20 O1 5TG doub 57 n n C22 C21 5TG sing 58 n n C22 C23 5TG sing 59 n n C22 C24 5TG sing 60 n n C19 H28 5TG sing 61 n n C19 H29 5TG sing 62 n n C19 H30 5TG sing 63 n n C21 H31 5TG sing 64 n n C21 H32 5TG sing 65 n n C21 H33 5TG sing 66 n n C23 H34 5TG sing 67 n n C23 H35 5TG sing 68 n n C23 H36 5TG sing 69 n n C24 H37 5TG sing 70 n n C24 H38 5TG sing 71 n n C24 H39 5TG sing 72 n n # _atom_sites.entry_id 5F08 _atom_sites.fract_transf_matrix[1][1] 0.008286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5TG A 1 301 1 5TG 177 . C 3 HOH A 1 401 14 HOH HOH . C 3 HOH A 2 402 7 HOH HOH . C 3 HOH A 3 403 11 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 13 HOH HOH . C 3 HOH A 6 406 17 HOH HOH . C 3 HOH A 7 407 6 HOH HOH . C 3 HOH A 8 408 1 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 18 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 16 HOH HOH . C 3 HOH A 14 414 5 HOH HOH . C 3 HOH A 15 415 3 HOH HOH . C 3 HOH A 16 416 8 HOH HOH . C 3 HOH A 17 417 15 HOH HOH . C 3 HOH A 18 418 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 5TG . . . B 2 28.863 14.699 -1.579 1 27.42 ? N 5TG 301 A 1 HETATM 2 C C 5TG . . . B 2 29.206 15.688 -0.552 1 25.31 ? C 5TG 301 A 1 HETATM 3 O O2 5TG . . . B 2 27.73 13.369 -0.106 1 25.89 ? O2 5TG 301 A 1 HETATM 4 C C4 5TG . . . B 2 28.187 13.624 -1.282 1 23.78 ? C4 5TG 301 A 1 HETATM 5 C C3 5TG . . . B 2 29.283 14.978 -2.962 1 29.99 ? C3 5TG 301 A 1 HETATM 6 C C2 5TG . . . B 2 29.998 16.327 -2.803 1 32.53 ? C2 5TG 301 A 1 HETATM 7 C C1 5TG . . . B 2 30.133 16.609 -1.31 1 35.54 ? C1 5TG 301 A 1 HETATM 8 C C5 5TG . . . B 2 28.07 12.648 -2.427 1 24.2 ? C5 5TG 301 A 1 HETATM 9 C C6 5TG . . . B 2 27.263 11.46 -1.971 1 27.15 ? C6 5TG 301 A 1 HETATM 10 C C7 5TG . . . B 2 27.018 10.437 -3.061 1 28.66 ? C7 5TG 301 A 1 HETATM 11 C C11 5TG . . . B 2 26.281 9.337 -2.349 1 30.75 ? C11 5TG 301 A 1 HETATM 12 C C10 5TG . . . B 2 25.917 8.258 -3.373 1 34.98 ? C10 5TG 301 A 1 HETATM 13 N N1 5TG . . . B 2 27.088 7.791 -4.099 1 36.49 ? N1 5TG 301 A 1 HETATM 14 C C9 5TG . . . B 2 27.897 8.769 -4.791 1 35.31 ? C9 5TG 301 A 1 HETATM 15 C C8 5TG . . . B 2 28.28 9.843 -3.735 1 39.55 ? C8 5TG 301 A 1 HETATM 16 C C12 5TG . . . B 2 27.244 6.336 -4.054 1 37.28 ? C12 5TG 301 A 1 HETATM 17 C C17 5TG . . . B 2 28.315 5.662 -4.542 1 43.3 ? C17 5TG 301 A 1 HETATM 18 C C16 5TG . . . B 2 28.359 4.251 -4.458 1 55.38 ? C16 5TG 301 A 1 HETATM 19 C C15 5TG . . . B 2 27.294 3.522 -3.879 1 61.95 ? C15 5TG 301 A 1 HETATM 20 C C14 5TG . . . B 2 26.186 4.197 -3.399 1 53.57 ? C14 5TG 301 A 1 HETATM 21 C C13 5TG . . . B 2 26.209 5.594 -3.497 1 38.56 ? C13 5TG 301 A 1 HETATM 22 C C18 5TG . . . B 2 27.332 2.002 -3.788 1 68.89 ? C18 5TG 301 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #