data_5F0B # _model_server_result.job_id 8lXAtEDhjt-nXF97F-XzkQ _model_server_result.datetime_utc '2024-11-01 08:26:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5F0B # _exptl.entry_id 5F0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5F0B _cell.length_a 86.212 _cell.length_b 86.212 _cell.length_c 114.459 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 62 A HIS 64 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 A NE2 HIS 94 A HIS 96 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5F0B _atom_sites.fract_transf_matrix[1][1] 0.011599 _atom_sites.fract_transf_matrix[1][2] 0.006697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 SO4 A 1 202 202 SO4 SO4 . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 305 HOH HOH . D 4 HOH A 3 303 376 HOH HOH . D 4 HOH A 4 304 302 HOH HOH . D 4 HOH A 5 305 318 HOH HOH . D 4 HOH A 6 306 307 HOH HOH . D 4 HOH A 7 307 328 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 312 HOH HOH . D 4 HOH A 10 310 325 HOH HOH . D 4 HOH A 11 311 332 HOH HOH . D 4 HOH A 12 312 335 HOH HOH . D 4 HOH A 13 313 343 HOH HOH . D 4 HOH A 14 314 333 HOH HOH . D 4 HOH A 15 315 341 HOH HOH . D 4 HOH A 16 316 403 HOH HOH . D 4 HOH A 17 317 322 HOH HOH . D 4 HOH A 18 318 303 HOH HOH . D 4 HOH A 19 319 384 HOH HOH . D 4 HOH A 20 320 329 HOH HOH . D 4 HOH A 21 321 348 HOH HOH . D 4 HOH A 22 322 310 HOH HOH . D 4 HOH A 23 323 412 HOH HOH . D 4 HOH A 24 324 397 HOH HOH . D 4 HOH A 25 325 372 HOH HOH . D 4 HOH A 26 326 323 HOH HOH . D 4 HOH A 27 327 346 HOH HOH . D 4 HOH A 28 328 342 HOH HOH . D 4 HOH A 29 329 375 HOH HOH . D 4 HOH A 30 330 405 HOH HOH . D 4 HOH A 31 331 381 HOH HOH . D 4 HOH A 32 332 324 HOH HOH . D 4 HOH A 33 333 313 HOH HOH . D 4 HOH A 34 334 353 HOH HOH . D 4 HOH A 35 335 356 HOH HOH . D 4 HOH A 36 336 374 HOH HOH . D 4 HOH A 37 337 400 HOH HOH . D 4 HOH A 38 338 336 HOH HOH . D 4 HOH A 39 339 345 HOH HOH . D 4 HOH A 40 340 319 HOH HOH . D 4 HOH A 41 341 369 HOH HOH . D 4 HOH A 42 342 354 HOH HOH . D 4 HOH A 43 343 337 HOH HOH . D 4 HOH A 44 344 366 HOH HOH . D 4 HOH A 45 345 350 HOH HOH . D 4 HOH A 46 346 327 HOH HOH . D 4 HOH A 47 347 352 HOH HOH . D 4 HOH A 48 348 410 HOH HOH . D 4 HOH A 49 349 361 HOH HOH . D 4 HOH A 50 350 358 HOH HOH . D 4 HOH A 51 351 407 HOH HOH . D 4 HOH A 52 352 385 HOH HOH . D 4 HOH A 53 353 409 HOH HOH . D 4 HOH A 54 354 380 HOH HOH . D 4 HOH A 55 355 371 HOH HOH . D 4 HOH A 56 356 413 HOH HOH . D 4 HOH A 57 357 315 HOH HOH . D 4 HOH A 58 358 402 HOH HOH . D 4 HOH A 59 359 411 HOH HOH . D 4 HOH A 60 360 357 HOH HOH . D 4 HOH A 61 361 388 HOH HOH . D 4 HOH A 62 362 401 HOH HOH . D 4 HOH A 63 363 408 HOH HOH . D 4 HOH A 64 364 326 HOH HOH . D 4 HOH A 65 365 404 HOH HOH . D 4 HOH A 66 366 390 HOH HOH . D 4 HOH A 67 367 340 HOH HOH . D 4 HOH A 68 368 392 HOH HOH . D 4 HOH A 69 369 378 HOH HOH . D 4 HOH A 70 370 386 HOH HOH . D 4 HOH A 71 371 379 HOH HOH . D 4 HOH A 72 372 399 HOH HOH . D 4 HOH A 73 373 406 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 19.132 57.146 36.109 1 15.23 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 14.766 56.335 34.141 1 17.61 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 15.372 51.605 34.905 1 20.68 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 19.955 52.428 36.142 1 22.4 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 17.862 57.318 35.574 1 16.4 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 17.339 58.515 35.176 1 16.36 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 16.108 58.303 34.629 1 16.64 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 15.91 56.963 34.625 1 17.89 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 15.103 59.3 34.044 1 16.3 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 17.95 59.899 35.373 1 16.87 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 18.436 60.424 34.042 1 16.61 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 19.663 59.633 33.643 1 19.79 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 20.664 59.445 34.379 1 24.39 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 19.735 59.164 32.524 1 18.83 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 14.552 54.979 34.159 1 15.8 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 13.262 54.391 33.84 1 18.31 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 13.448 53.079 34.018 1 16.63 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 14.819 52.846 34.547 1 15.56 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 12.051 55.052 33.317 1 20.61 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 12.434 52.111 33.917 1 18.85 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 12.349 51.074 34.717 1 19.91 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 16.688 51.389 35.281 1 20.78 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 17.199 50.218 35.666 1 22.74 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 18.537 50.504 35.98 1 24.11 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 18.769 51.859 35.794 1 21.59 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 16.562 48.834 35.621 1 27.29 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 19.569 49.598 36.463 1 25 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 19.209 48.433 36.949 1 30.17 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 20.091 53.766 36.262 1 21.3 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 21.306 54.39 36.847 1 17.49 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 21.073 55.702 36.783 1 17.5 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 19.695 55.875 36.308 1 16.53 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 22.563 53.747 37.235 1 17.64 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 21.929 56.813 37.212 1 18.83 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 21.517 57.052 38.65 1 25.73 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 22.321 58.023 39.522 1 29.94 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 22.132 59.246 39.56 1 36.45 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 23.09 57.623 40.334 1 35.47 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 16.985 56.309 35.176 1 15.42 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 15.363 54.008 34.57 1 15.72 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 17.597 52.378 35.461 1 16.85 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 19.163 54.641 35.959 1 20.04 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 17.295 54.338 35.299 1 18.51 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #