data_5F0F # _model_server_result.job_id CmoN5n6LxZqBZ4_vxtUsmg _model_server_result.datetime_utc '2024-10-20 00:30:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5F0F # _exptl.entry_id 5F0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 311.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]benzenecarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F0F _cell.length_a 121.29 _cell.length_b 121.29 _cell.length_c 33.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H25 N3 O' _chem_comp.formula_weight 311.421 _chem_comp.id 5TD _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C4 5TD doub 1 n n C3 C2 5TD sing 2 n n C3 N 5TD sing 3 n n C2 C1 5TD sing 4 n n C4 N 5TD sing 5 n n C4 C5 5TD sing 6 n n N C 5TD sing 7 n n C6 C5 5TD sing 8 n n C6 C7 5TD sing 9 n n N2 C18 5TD trip 10 n n C11 C7 5TD sing 11 n n C11 C10 5TD sing 12 n n C1 C 5TD sing 13 n n C7 C8 5TD sing 14 n n C18 C15 5TD sing 15 n n C14 C15 5TD doub 16 n y C14 C13 5TD sing 17 n y C15 C16 5TD sing 18 n y C13 C12 5TD doub 19 n y C10 N1 5TD sing 20 n n C16 C17 5TD doub 21 n y C12 C17 5TD sing 22 n y C12 N1 5TD sing 23 n n C8 C9 5TD sing 24 n n N1 C9 5TD sing 25 n n C3 H1 5TD sing 26 n n C3 H2 5TD sing 27 n n C2 H3 5TD sing 28 n n C2 H4 5TD sing 29 n n C1 H5 5TD sing 30 n n C1 H6 5TD sing 31 n n C H7 5TD sing 32 n n C H8 5TD sing 33 n n C5 H9 5TD sing 34 n n C5 H10 5TD sing 35 n n C6 H11 5TD sing 36 n n C6 H12 5TD sing 37 n n C7 H13 5TD sing 38 n n C11 H14 5TD sing 39 n n C11 H15 5TD sing 40 n n C10 H16 5TD sing 41 n n C10 H17 5TD sing 42 n n C9 H18 5TD sing 43 n n C9 H19 5TD sing 44 n n C8 H20 5TD sing 45 n n C8 H21 5TD sing 46 n n C17 H22 5TD sing 47 n n C16 H23 5TD sing 48 n n C14 H24 5TD sing 49 n n C13 H25 5TD sing 50 n n # _atom_sites.entry_id 5F0F _atom_sites.fract_transf_matrix[1][1] 0.008245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5TD A 1 301 1 5TD 182 . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 12 HOH HOH . D 4 HOH A 2 402 18 HOH HOH . D 4 HOH A 3 403 7 HOH HOH . D 4 HOH A 4 404 17 HOH HOH . D 4 HOH A 5 405 13 HOH HOH . D 4 HOH A 6 406 1 HOH HOH . D 4 HOH A 7 407 9 HOH HOH . D 4 HOH A 8 408 27 HOH HOH . D 4 HOH A 9 409 21 HOH HOH . D 4 HOH A 10 410 3 HOH HOH . D 4 HOH A 11 411 8 HOH HOH . D 4 HOH A 12 412 22 HOH HOH . D 4 HOH A 13 413 23 HOH HOH . D 4 HOH A 14 414 29 HOH HOH . D 4 HOH A 15 415 5 HOH HOH . D 4 HOH A 16 416 10 HOH HOH . D 4 HOH A 17 417 24 HOH HOH . D 4 HOH A 18 418 14 HOH HOH . D 4 HOH A 19 419 15 HOH HOH . D 4 HOH A 20 420 25 HOH HOH . D 4 HOH A 21 421 4 HOH HOH . D 4 HOH A 22 422 19 HOH HOH . D 4 HOH A 23 423 37 HOH HOH . D 4 HOH A 24 424 11 HOH HOH . D 4 HOH A 25 425 2 HOH HOH . D 4 HOH A 26 426 20 HOH HOH . D 4 HOH A 27 427 28 HOH HOH . D 4 HOH A 28 428 6 HOH HOH . D 4 HOH A 29 429 30 HOH HOH . D 4 HOH A 30 430 32 HOH HOH . D 4 HOH A 31 431 34 HOH HOH . D 4 HOH A 32 432 35 HOH HOH . D 4 HOH A 33 433 26 HOH HOH . D 4 HOH A 34 434 33 HOH HOH . D 4 HOH A 35 435 31 HOH HOH . D 4 HOH A 36 436 36 HOH HOH . D 4 HOH A 37 437 16 HOH HOH . D 4 HOH A 38 438 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 5TD . . . B 2 13.418 27.766 0.331 1 31.17 ? O 5TD 301 A 1 HETATM 2 C C4 5TD . . . B 2 13.833 28.304 1.389 1 31.04 ? C4 5TD 301 A 1 HETATM 3 N N 5TD . . . B 2 14.947 28.965 1.629 1 26.67 ? N 5TD 301 A 1 HETATM 4 C C3 5TD . . . B 2 15.844 29.512 0.577 1 27.39 ? C3 5TD 301 A 1 HETATM 5 C C2 5TD . . . B 2 16.881 30.319 1.299 1 31.83 ? C2 5TD 301 A 1 HETATM 6 C C1 5TD . . . B 2 16.758 29.9 2.758 1 32.34 ? C1 5TD 301 A 1 HETATM 7 C C 5TD . . . B 2 15.338 29.37 2.99 1 31.45 ? C 5TD 301 A 1 HETATM 8 C C5 5TD . . . B 2 13.011 28.338 2.588 1 26.12 ? C5 5TD 301 A 1 HETATM 9 C C6 5TD . . . B 2 11.804 27.53 2.245 1 25.6 ? C6 5TD 301 A 1 HETATM 10 C C7 5TD . . . B 2 10.46 27.497 2.907 1 32.53 ? C7 5TD 301 A 1 HETATM 11 C C11 5TD . . . B 2 9.807 26.171 2.754 1 35.65 ? C11 5TD 301 A 1 HETATM 12 C C10 5TD . . . B 2 8.723 25.805 3.806 1 43.19 ? C10 5TD 301 A 1 HETATM 13 N N1 5TD . . . B 2 8.104 27.011 4.33 1 44.07 ? N1 5TD 301 A 1 HETATM 14 C C9 5TD . . . B 2 8.959 28.014 4.982 1 40.86 ? C9 5TD 301 A 1 HETATM 15 C C8 5TD . . . B 2 10.275 28.212 4.234 1 35.57 ? C8 5TD 301 A 1 HETATM 16 C C12 5TD . . . B 2 6.719 27.247 4.044 1 48.22 ? C12 5TD 301 A 1 HETATM 17 C C17 5TD . . . B 2 6.114 28.498 4.24 1 50.49 ? C17 5TD 301 A 1 HETATM 18 C C16 5TD . . . B 2 4.757 28.701 3.922 1 54.8 ? C16 5TD 301 A 1 HETATM 19 C C15 5TD . . . B 2 4.008 27.648 3.383 1 57.06 ? C15 5TD 301 A 1 HETATM 20 C C18 5TD . . . B 2 2.766 27.83 3.05 1 64.49 ? C18 5TD 301 A 1 HETATM 21 N N2 5TD . . . B 2 1.661 27.998 2.743 1 62.52 ? N2 5TD 301 A 1 HETATM 22 C C14 5TD . . . B 2 4.603 26.401 3.159 1 48.99 ? C14 5TD 301 A 1 HETATM 23 C C13 5TD . . . B 2 5.941 26.218 3.485 1 50.91 ? C13 5TD 301 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #