data_5F0H # _model_server_result.job_id V0yDDBPKI6cXlTpDMzjr-Q _model_server_result.datetime_utc '2024-10-20 03:28:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5F0H # _exptl.entry_id 5F0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.585 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[1-(4-cyanophenyl)piperidin-4-yl]-~{N}-[(4-piperidin-1-ylphenyl)methyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F0H _cell.length_a 120.35 _cell.length_b 120.35 _cell.length_c 33.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -16.85 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H34 N4 O' _chem_comp.formula_weight 430.585 _chem_comp.id 5TC _chem_comp.mon_nstd_flag . _chem_comp.name 3-[1-(4-cyanophenyl)piperidin-4-yl]-~{N}-[(4-piperidin-1-ylphenyl)methyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C12 5TC doub 1 n n C16 C17 5TC sing 2 n n C16 C15 5TC sing 3 n n C17 N2 5TC sing 4 n n C14 C15 5TC sing 5 n n C14 C13 5TC sing 6 n n C12 C13 5TC sing 7 n n C12 N1 5TC sing 8 n n C15 C19 5TC sing 9 n n C25 C24 5TC doub 10 n y C25 C20 5TC sing 11 n y C11 N1 5TC sing 12 n n C11 C8 5TC sing 13 n n C24 C23 5TC sing 14 n y C9 C8 5TC doub 15 n y C9 C10 5TC sing 16 n y N2 C20 5TC sing 17 n n N2 C18 5TC sing 18 n n C8 C7 5TC sing 19 n y C10 C5 5TC doub 20 n y C20 C21 5TC doub 21 n y C19 C18 5TC sing 22 n n C N 5TC sing 23 n n C C1 5TC sing 24 n n C7 C6 5TC doub 25 n y C5 N 5TC sing 26 n n C5 C6 5TC sing 27 n y C23 C26 5TC sing 28 n n C23 C22 5TC doub 29 n y C3 C2 5TC sing 30 n n C3 C4 5TC sing 31 n n C26 N3 5TC trip 32 n n C2 C1 5TC sing 33 n n N C4 5TC sing 34 n n C21 C22 5TC sing 35 n y C H1 5TC sing 36 n n C H2 5TC sing 37 n n N1 H3 5TC sing 38 n n C11 H4 5TC sing 39 n n C11 H5 5TC sing 40 n n C7 H6 5TC sing 41 n n C6 H7 5TC sing 42 n n C9 H8 5TC sing 43 n n C10 H9 5TC sing 44 n n C4 H10 5TC sing 45 n n C4 H11 5TC sing 46 n n C3 H12 5TC sing 47 n n C3 H13 5TC sing 48 n n C2 H14 5TC sing 49 n n C2 H15 5TC sing 50 n n C1 H16 5TC sing 51 n n C1 H17 5TC sing 52 n n C13 H18 5TC sing 53 n n C13 H19 5TC sing 54 n n C14 H20 5TC sing 55 n n C14 H21 5TC sing 56 n n C15 H22 5TC sing 57 n n C19 H23 5TC sing 58 n n C19 H24 5TC sing 59 n n C18 H25 5TC sing 60 n n C18 H26 5TC sing 61 n n C17 H27 5TC sing 62 n n C17 H28 5TC sing 63 n n C16 H29 5TC sing 64 n n C16 H30 5TC sing 65 n n C25 H31 5TC sing 66 n n C24 H32 5TC sing 67 n n C22 H33 5TC sing 68 n n C21 H34 5TC sing 69 n n # _atom_sites.entry_id 5F0H _atom_sites.fract_transf_matrix[1][1] 0.008309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5TC A 1 301 1 5TC 192 . C 3 HOH A 1 401 13 HOH HOH . C 3 HOH A 2 402 8 HOH HOH . C 3 HOH A 3 403 17 HOH HOH . C 3 HOH A 4 404 14 HOH HOH . C 3 HOH A 5 405 6 HOH HOH . C 3 HOH A 6 406 15 HOH HOH . C 3 HOH A 7 407 1 HOH HOH . C 3 HOH A 8 408 21 HOH HOH . C 3 HOH A 9 409 16 HOH HOH . C 3 HOH A 10 410 7 HOH HOH . C 3 HOH A 11 411 20 HOH HOH . C 3 HOH A 12 412 3 HOH HOH . C 3 HOH A 13 413 9 HOH HOH . C 3 HOH A 14 414 19 HOH HOH . C 3 HOH A 15 415 5 HOH HOH . C 3 HOH A 16 416 2 HOH HOH . C 3 HOH A 17 417 10 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 12 HOH HOH . C 3 HOH A 20 420 4 HOH HOH . C 3 HOH A 21 421 11 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 5TC . . . B 2 26.809 -5.585 -4.389 1 46.75 ? N 5TC 301 A 1 HETATM 2 O O 5TC . . . B 2 27.18 -13.034 -7.777 1 38.2 ? O 5TC 301 A 1 HETATM 3 C C 5TC . . . B 2 25.883 -4.552 -4.891 1 50.47 ? C 5TC 301 A 1 HETATM 4 C C12 5TC . . . B 2 27.475 -12.967 -6.556 1 38.4 ? C12 5TC 301 A 1 HETATM 5 N N1 5TC . . . B 2 27.348 -11.905 -5.668 1 38.24 ? N1 5TC 301 A 1 HETATM 6 C C11 5TC . . . B 2 26.455 -10.882 -6.02 1 35.57 ? C11 5TC 301 A 1 HETATM 7 C C8 5TC . . . B 2 26.63 -9.558 -5.445 1 35.12 ? C8 5TC 301 A 1 HETATM 8 C C7 5TC . . . B 2 27.714 -9.158 -4.694 1 38.08 ? C7 5TC 301 A 1 HETATM 9 C C6 5TC . . . B 2 27.732 -7.831 -4.289 1 38.73 ? C6 5TC 301 A 1 HETATM 10 C C9 5TC . . . B 2 25.623 -8.679 -5.825 1 40.61 ? C9 5TC 301 A 1 HETATM 11 C C10 5TC . . . B 2 25.639 -7.346 -5.413 1 41.08 ? C10 5TC 301 A 1 HETATM 12 C C5 5TC . . . B 2 26.725 -6.936 -4.662 1 42.06 ? C5 5TC 301 A 1 HETATM 13 C C4 5TC . . . B 2 27.979 -5.122 -3.674 1 56.67 ? C4 5TC 301 A 1 HETATM 14 C C3 5TC . . . B 2 28.633 -4.052 -4.505 1 53.48 ? C3 5TC 301 A 1 HETATM 15 C C2 5TC . . . B 2 27.774 -2.798 -4.445 1 55.57 ? C2 5TC 301 A 1 HETATM 16 C C1 5TC . . . B 2 26.28 -3.152 -4.316 1 53.78 ? C1 5TC 301 A 1 HETATM 17 C C13 5TC . . . B 2 28.024 -14.127 -5.87 1 30.16 ? C13 5TC 301 A 1 HETATM 18 C C14 5TC . . . B 2 28.098 -15.234 -6.852 1 32.06 ? C14 5TC 301 A 1 HETATM 19 C C15 5TC . . . B 2 29.11 -16.288 -6.542 1 31.77 ? C15 5TC 301 A 1 HETATM 20 C C19 5TC . . . B 2 29.34 -16.334 -5.04 1 34.25 ? C19 5TC 301 A 1 HETATM 21 C C18 5TC . . . B 2 30.368 -17.387 -4.684 1 36.76 ? C18 5TC 301 A 1 HETATM 22 N N2 5TC . . . B 2 31.384 -17.737 -5.739 1 40.28 ? N2 5TC 301 A 1 HETATM 23 C C17 5TC . . . B 2 31.198 -17.424 -7.192 1 35.11 ? C17 5TC 301 A 1 HETATM 24 C C16 5TC . . . B 2 30.368 -16.169 -7.349 1 34.97 ? C16 5TC 301 A 1 HETATM 25 C C20 5TC . . . B 2 32.512 -18.49 -5.266 1 38.08 ? C20 5TC 301 A 1 HETATM 26 C C25 5TC . . . B 2 33.112 -19.305 -6.192 1 41.03 ? C25 5TC 301 A 1 HETATM 27 C C24 5TC . . . B 2 34.235 -20.037 -5.882 1 43.78 ? C24 5TC 301 A 1 HETATM 28 C C23 5TC . . . B 2 34.736 -20.049 -4.616 1 44.9 ? C23 5TC 301 A 1 HETATM 29 C C26 5TC . . . B 2 35.723 -20.843 -4.469 1 66.57 ? C26 5TC 301 A 1 HETATM 30 N N3 5TC . . . B 2 36.555 -21.67 -4.294 1 84.58 ? N3 5TC 301 A 1 HETATM 31 C C22 5TC . . . B 2 34.164 -19.291 -3.582 1 41.58 ? C22 5TC 301 A 1 HETATM 32 C C21 5TC . . . B 2 33.023 -18.511 -3.9 1 41.28 ? C21 5TC 301 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #