data_5F0J
#
_model_server_result.job_id            4pQsGU9RACXIZEhWySl2hw 
_model_server_result.datetime_utc      '2025-04-04 21:04:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":201}' 
#
_entry.id    5F0J 
#
_exptl.entry_id    5F0J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.87 
_cell.angle_gamma         90 
_cell.entry_id            5F0J 
_cell.length_a            372.82 
_cell.length_b            75.58 
_cell.length_c            57.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 Z N N 
? 6 AA N N 
? 6 BA N N 
? 6 CA N N 
? 6 DA N N 
? 6 EA N N 
? 6 JA N N 
? 6 KA N N 
? 6 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LYS 27 B LYS 25 1_555 B N MSE 28 B MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 B C MSE 28 B MSE 26 1_555 B N ALA 29 B ALA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C GLU 30 B GLU 28 1_555 B N MSE 31 B MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 B C MSE 31 B MSE 29 1_555 B N LYS 32 B LYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 B C PHE 113 B PHE 111 1_555 B N MSE 114 B MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C MSE 114 B MSE 112 1_555 B N GLN 115 B GLN 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 B C LYS 167 B LYS 165 1_555 B N MSE 168 B MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 B C MSE 168 B MSE 166 1_555 B N GLU 169 B GLU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale9 B C HIS 208 B HIS 206 1_555 B N MSE 209 B MSE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale10 B C MSE 209 B MSE 207 1_555 B N GLU 210 B GLU 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale11 B C ILE 237 B ILE 235 1_555 B N MSE 238 B MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 B C MSE 238 B MSE 236 1_555 B N ASP 239 B ASP 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale13 B C THR 262 B THR 260 1_555 B N MSE 263 B MSE 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 B C MSE 263 B MSE 261 1_555 B N ARG 264 B ARG 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale15 B C GLU 328 B GLU 326 1_555 B N MSE 329 B MSE 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 B C MSE 329 B MSE 327 1_555 B N GLY 330 B GLY 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5F0J 
_atom_sites.fract_transf_matrix[1][1]    0.002682 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000371 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013231 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017548 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 SO4 A 1 501 470 SO4 SO4 . 
E 4 SO4 A 1 502 471 SO4 SO4 . 
F 5 GOL A 1 503 472 GOL GOL . 
G 6 EDO A 1 504 473 EDO EDO . 
H 6 EDO A 1 505 474 EDO EDO . 
I 6 EDO A 1 506 475 EDO EDO . 
J 6 EDO A 1 507 476 EDO EDO . 
K 6 EDO A 1 508 477 EDO EDO . 
L 6 EDO A 1 509 479 EDO EDO . 
M 6 EDO A 1 510 480 EDO EDO . 
N 6 EDO A 1 511 481 EDO EDO . 
O 6 EDO A 1 512 482 EDO EDO . 
P 4 SO4 B 1 401 334 SO4 SO4 . 
Q 5 GOL B 1 402 335 GOL GOL . 
R 5 GOL B 1 403 336 GOL GOL . 
S 5 GOL B 1 404 337 GOL GOL . 
T 6 EDO B 1 405 338 EDO EDO . 
U 6 EDO B 1 406 339 EDO EDO . 
V 6 EDO B 1 407 340 EDO EDO . 
W 6 EDO B 1 408 341 EDO EDO . 
X 6 EDO B 1 409 342 EDO EDO . 
Y 6 EDO B 1 410 343 EDO EDO . 
Z 6 EDO B 1 411 344 EDO EDO . 
AA 6 EDO B 1 412 345 EDO EDO . 
BA 6 EDO B 1 413 346 EDO EDO . 
CA 6 EDO B 1 414 347 EDO EDO . 
DA 6 EDO B 1 415 348 EDO EDO . 
EA 6 EDO C 1 201 478 EDO EDO . 
FA 4 SO4 C 1 202 159 SO4 SO4 . 
GA 4 SO4 C 1 203 160 SO4 SO4 . 
HA 4 SO4 C 1 204 161 SO4 SO4 . 
IA 5 GOL C 1 205 162 GOL GOL . 
JA 6 EDO C 1 206 163 EDO EDO . 
KA 6 EDO C 1 207 164 EDO EDO . 
LA 6 EDO C 1 208 165 EDO EDO . 
MA 7 HOH A 1 601 489 HOH HOH . 
MA 7 HOH A 2 602 498 HOH HOH . 
MA 7 HOH A 3 603 167 HOH HOH . 
MA 7 HOH A 4 604 491 HOH HOH . 
MA 7 HOH A 5 605 502 HOH HOH . 
MA 7 HOH A 6 606 181 HOH HOH . 
MA 7 HOH A 7 607 495 HOH HOH . 
MA 7 HOH A 8 608 500 HOH HOH . 
MA 7 HOH A 9 609 505 HOH HOH . 
MA 7 HOH A 10 610 490 HOH HOH . 
MA 7 HOH A 11 611 504 HOH HOH . 
MA 7 HOH A 12 612 494 HOH HOH . 
MA 7 HOH A 13 613 488 HOH HOH . 
MA 7 HOH A 14 614 492 HOH HOH . 
MA 7 HOH A 15 615 486 HOH HOH . 
MA 7 HOH A 16 616 484 HOH HOH . 
MA 7 HOH A 17 617 497 HOH HOH . 
MA 7 HOH A 18 618 487 HOH HOH . 
MA 7 HOH A 19 619 501 HOH HOH . 
MA 7 HOH A 20 620 503 HOH HOH . 
MA 7 HOH A 21 621 493 HOH HOH . 
MA 7 HOH A 22 622 496 HOH HOH . 
MA 7 HOH A 23 623 188 HOH HOH . 
MA 7 HOH A 24 624 483 HOH HOH . 
MA 7 HOH A 25 625 506 HOH HOH . 
MA 7 HOH A 26 626 507 HOH HOH . 
MA 7 HOH A 27 627 499 HOH HOH . 
MA 7 HOH A 28 628 485 HOH HOH . 
MA 7 HOH A 29 629 508 HOH HOH . 
NA 7 HOH B 1 501 388 HOH HOH . 
NA 7 HOH B 2 502 355 HOH HOH . 
NA 7 HOH B 3 503 384 HOH HOH . 
NA 7 HOH B 4 504 385 HOH HOH . 
NA 7 HOH B 5 505 360 HOH HOH . 
NA 7 HOH B 6 506 363 HOH HOH . 
NA 7 HOH B 7 507 351 HOH HOH . 
NA 7 HOH B 8 508 392 HOH HOH . 
NA 7 HOH B 9 509 364 HOH HOH . 
NA 7 HOH B 10 510 361 HOH HOH . 
NA 7 HOH B 11 511 379 HOH HOH . 
NA 7 HOH B 12 512 390 HOH HOH . 
NA 7 HOH B 13 513 358 HOH HOH . 
NA 7 HOH B 14 514 371 HOH HOH . 
NA 7 HOH B 15 515 373 HOH HOH . 
NA 7 HOH B 16 516 354 HOH HOH . 
NA 7 HOH B 17 517 375 HOH HOH . 
NA 7 HOH B 18 518 352 HOH HOH . 
NA 7 HOH B 19 519 349 HOH HOH . 
NA 7 HOH B 20 520 381 HOH HOH . 
NA 7 HOH B 21 521 380 HOH HOH . 
NA 7 HOH B 22 522 378 HOH HOH . 
NA 7 HOH B 23 523 377 HOH HOH . 
NA 7 HOH B 24 524 172 HOH HOH . 
NA 7 HOH B 25 525 393 HOH HOH . 
NA 7 HOH B 26 526 350 HOH HOH . 
NA 7 HOH B 27 527 391 HOH HOH . 
NA 7 HOH B 28 528 356 HOH HOH . 
NA 7 HOH B 29 529 374 HOH HOH . 
NA 7 HOH B 30 530 376 HOH HOH . 
NA 7 HOH B 31 531 389 HOH HOH . 
NA 7 HOH B 32 532 383 HOH HOH . 
NA 7 HOH B 33 533 357 HOH HOH . 
NA 7 HOH B 34 534 394 HOH HOH . 
NA 7 HOH B 35 535 362 HOH HOH . 
NA 7 HOH B 36 536 367 HOH HOH . 
NA 7 HOH B 37 537 353 HOH HOH . 
NA 7 HOH B 38 538 386 HOH HOH . 
NA 7 HOH B 39 539 359 HOH HOH . 
NA 7 HOH B 40 540 382 HOH HOH . 
NA 7 HOH B 41 541 372 HOH HOH . 
NA 7 HOH B 42 542 365 HOH HOH . 
NA 7 HOH B 43 543 387 HOH HOH . 
NA 7 HOH B 44 544 368 HOH HOH . 
NA 7 HOH B 45 545 366 HOH HOH . 
NA 7 HOH B 46 546 369 HOH HOH . 
NA 7 HOH B 47 547 370 HOH HOH . 
OA 7 HOH C 1 301 168 HOH HOH . 
OA 7 HOH C 2 302 180 HOH HOH . 
OA 7 HOH C 3 303 186 HOH HOH . 
OA 7 HOH C 4 304 184 HOH HOH . 
OA 7 HOH C 5 305 174 HOH HOH . 
OA 7 HOH C 6 306 170 HOH HOH . 
OA 7 HOH C 7 307 185 HOH HOH . 
OA 7 HOH C 8 308 173 HOH HOH . 
OA 7 HOH C 9 309 183 HOH HOH . 
OA 7 HOH C 10 310 177 HOH HOH . 
OA 7 HOH C 11 311 171 HOH HOH . 
OA 7 HOH C 12 312 169 HOH HOH . 
OA 7 HOH C 13 313 176 HOH HOH . 
OA 7 HOH C 14 314 175 HOH HOH . 
OA 7 HOH C 15 315 182 HOH HOH . 
OA 7 HOH C 16 316 179 HOH HOH . 
OA 7 HOH C 17 317 178 HOH HOH . 
OA 7 HOH C 18 318 187 HOH HOH . 
OA 7 HOH C 19 319 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . EA 6 71.341 -17.193 13.121 1 64.06 ? C1 EDO 201 C 1 
HETATM 2 O O1 EDO . . . EA 6 70.024 -17.319 12.571 1 59.77 ? O1 EDO 201 C 1 
HETATM 3 C C2 EDO . . . EA 6 72.167 -16.142 12.369 1 67.49 ? C2 EDO 201 C 1 
HETATM 4 O O2 EDO . . . EA 6 71.79 -16.025 10.982 1 66.68 ? O2 EDO 201 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#