data_5F0K
#
_model_server_result.job_id            FI1mBTtIW-iDBwXSY7RQaA 
_model_server_result.datetime_utc      '2025-07-30 21:39:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f0k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":505}' 
#
_entry.id    5F0K 
#
_exptl.entry_id    5F0K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          125.5 
_cell.angle_gamma         90 
_cell.entry_id            5F0K 
_cell.length_a            200.7 
_cell.length_b            108.6 
_cell.length_c            167.9 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F0K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G,H,I,J,K,L,GA 1 1 
B,M,N,O,P,Q,R,HA 2 1 
C,S,T,U,V 3 1 
D,W,X,Y,Z,AA 4 1 
E,BA,CA,DA,EA,FA,IA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 K N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 U N N 
? 3 Z N N 
? 3 AA N N 
? 3 DA N N 
? 3 EA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     5F0K 
_atom_sites.fract_transf_matrix[1][1]    0.004983 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003554 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 EDO A 1 501 7 EDO EDO . 
G 2 EDO A 1 502 9 EDO EDO . 
H 2 EDO A 1 503 12 EDO EDO . 
I 2 EDO A 1 504 13 EDO EDO . 
J 2 EDO A 1 505 14 EDO EDO . 
K 3 GOL A 1 506 9 GOL GOL . 
L 4 SO4 A 1 507 1 SO4 SO4 . 
M 2 EDO B 1 501 6 EDO EDO . 
N 2 EDO B 1 502 15 EDO EDO . 
O 3 GOL B 1 503 1 GOL GOL . 
P 3 GOL B 1 504 3 GOL GOL . 
Q 3 GOL B 1 505 7 GOL GOL . 
R 4 SO4 B 1 506 2 SO4 SO4 . 
S 2 EDO C 1 501 1 EDO EDO . 
T 2 EDO C 1 502 10 EDO EDO . 
U 3 GOL C 1 503 5 GOL GOL . 
V 5 PG4 C 1 504 1 PG4 PG4 . 
W 2 EDO D 1 501 2 EDO EDO . 
X 2 EDO D 1 502 3 EDO EDO . 
Y 2 EDO D 1 503 4 EDO EDO . 
Z 3 GOL D 1 504 4 GOL GOL . 
AA 3 GOL D 1 505 6 GOL GOL . 
BA 2 EDO E 1 501 5 EDO EDO . 
CA 2 EDO E 1 502 8 EDO EDO . 
DA 3 GOL E 1 503 2 GOL GOL . 
EA 3 GOL E 1 504 8 GOL GOL . 
FA 4 SO4 E 1 505 3 SO4 SO4 . 
GA 6 HOH A 1 601 9 HOH HOH . 
GA 6 HOH A 2 602 17 HOH HOH . 
GA 6 HOH A 3 603 10 HOH HOH . 
GA 6 HOH A 4 604 1 HOH HOH . 
GA 6 HOH A 5 605 3 HOH HOH . 
GA 6 HOH A 6 606 8 HOH HOH . 
GA 6 HOH A 7 607 5 HOH HOH . 
HA 6 HOH B 1 601 12 HOH HOH . 
HA 6 HOH B 2 602 7 HOH HOH . 
HA 6 HOH B 3 603 16 HOH HOH . 
HA 6 HOH B 4 604 2 HOH HOH . 
HA 6 HOH B 5 605 18 HOH HOH . 
HA 6 HOH B 6 606 11 HOH HOH . 
HA 6 HOH B 7 607 15 HOH HOH . 
IA 6 HOH E 1 601 6 HOH HOH . 
IA 6 HOH E 2 602 4 HOH HOH . 
IA 6 HOH E 3 603 14 HOH HOH . 
IA 6 HOH E 4 604 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . AA 3 57.16 19.99 31.272 1 60.41 ? C1 GOL 505 D 1 
HETATM 2 O O1 GOL . . . AA 3 55.948 19.803 30.576 1 57.99 ? O1 GOL 505 D 1 
HETATM 3 C C2 GOL . . . AA 3 58.044 20.982 30.529 1 68.75 ? C2 GOL 505 D 1 
HETATM 4 O O2 GOL . . . AA 3 57.386 22.223 30.417 1 52.8 ? O2 GOL 505 D 1 
HETATM 5 C C3 GOL . . . AA 3 59.363 21.141 31.276 1 70.18 ? C3 GOL 505 D 1 
HETATM 6 O O3 GOL . . . AA 3 60.184 20.017 31.032 1 57.63 ? O3 GOL 505 D 1 
HETATM 7 H H11 GOL . . . AA 3 57.679 19.036 31.366 1 72.49 ? H11 GOL 505 D 1 
HETATM 8 H H12 GOL . . . AA 3 56.953 20.363 32.275 1 72.49 ? H12 GOL 505 D 1 
HETATM 9 H HO1 GOL . . . AA 3 55.415 19.115 31.026 1 69.59 ? HO1 GOL 505 D 1 
HETATM 10 H H2 GOL . . . AA 3 58.252 20.585 29.535 1 82.5 ? H2 GOL 505 D 1 
HETATM 11 H HO2 GOL . . . AA 3 57.214 22.583 31.311 1 63.36 ? HO2 GOL 505 D 1 
HETATM 12 H H31 GOL . . . AA 3 59.172 21.233 32.345 1 84.22 ? H31 GOL 505 D 1 
HETATM 13 H H32 GOL . . . AA 3 59.869 22.046 30.941 1 84.22 ? H32 GOL 505 D 1 
HETATM 14 H HO3 GOL . . . AA 3 61.043 20.135 31.489 1 69.16 ? HO3 GOL 505 D 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#