data_5F0L # _model_server_result.job_id 50_yOdZKWf0ZjqF1AtqJoA _model_server_result.datetime_utc '2024-10-12 15:26:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":415}' # _entry.id 5F0L # _exptl.entry_id 5F0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.56 _cell.angle_gamma 90 _cell.entry_id 5F0L _cell.length_a 371.37 _cell.length_b 75.21 _cell.length_c 57.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 V N N ? 7 W N N ? 7 X N N ? 7 Y N N ? 7 Z N N ? 7 AA N N ? 7 BA N N ? 7 CA N N ? 7 DA N N ? 7 EA N N ? 7 KA N N ? 7 LA N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5F0L _atom_sites.fract_transf_matrix[1][1] 0.002693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000405 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SO4 A 1 501 470 SO4 SO4 . F 5 SO4 A 1 502 471 SO4 SO4 . G 5 SO4 A 1 503 473 SO4 SO4 . H 6 GOL A 1 504 474 GOL GOL . I 6 GOL A 1 505 475 GOL GOL . J 7 EDO A 1 506 476 EDO EDO . K 7 EDO A 1 507 477 EDO EDO . L 7 EDO A 1 508 478 EDO EDO . M 7 EDO A 1 509 479 EDO EDO . N 7 EDO A 1 510 164 EDO EDO . O 7 EDO A 1 511 167 EDO EDO . P 5 SO4 B 1 401 472 SO4 SO4 . Q 5 SO4 B 1 402 302 SO4 SO4 . R 5 SO4 B 1 403 303 SO4 SO4 . S 5 SO4 B 1 404 304 SO4 SO4 . T 6 GOL B 1 405 305 GOL GOL . U 6 GOL B 1 406 306 GOL GOL . V 7 EDO B 1 407 307 EDO EDO . W 7 EDO B 1 408 308 EDO EDO . X 7 EDO B 1 409 309 EDO EDO . Y 7 EDO B 1 410 310 EDO EDO . Z 7 EDO B 1 411 311 EDO EDO . AA 7 EDO B 1 412 312 EDO EDO . BA 7 EDO B 1 413 313 EDO EDO . CA 7 EDO B 1 414 314 EDO EDO . DA 7 EDO B 1 415 315 EDO EDO . EA 7 EDO B 1 416 316 EDO EDO . FA 5 SO4 C 1 201 159 SO4 SO4 . GA 5 SO4 C 1 202 160 SO4 SO4 . HA 5 SO4 C 1 203 161 SO4 SO4 . IA 6 GOL C 1 204 162 GOL GOL . JA 6 GOL C 1 205 163 GOL GOL . KA 7 EDO C 1 206 165 EDO EDO . LA 7 EDO C 1 207 166 EDO EDO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . DA 7 134.677 32.332 34.197 1 56.06 ? C1 EDO 415 B 1 HETATM 2 O O1 EDO . . . DA 7 134.713 30.898 34.215 1 54.1 ? O1 EDO 415 B 1 HETATM 3 C C2 EDO . . . DA 7 134.968 32.861 35.599 1 56.58 ? C2 EDO 415 B 1 HETATM 4 O O2 EDO . . . DA 7 133.75 33.279 36.223 1 56.12 ? O2 EDO 415 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #