data_5F0W # _model_server_result.job_id '_nfY3aXHiAIA5LJM6x4f8w' _model_server_result.datetime_utc '2025-03-05 02:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 5F0W # _exptl.entry_id 5F0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 107.868 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SILVER ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5F0W _cell.length_a 112.493 _cell.length_b 112.493 _cell.length_c 56.634 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 12 A CYS 12 1_555 F AG AG . A AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc2 A SG CYS 12 A CYS 12 1_555 G AG AG . B AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc3 A SG CYS 15 A CYS 15 1_555 E AG AG . A AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc4 A SG CYS 15 A CYS 15 1_555 F AG AG . A AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 E AG AG . A AG 101 1_555 M O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc6 E AG AG . A AG 101 1_555 B SG CYS 12 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc7 B SG CYS 12 B CYS 12 1_555 H AG AG . B AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 B SG CYS 15 B CYS 15 1_555 G AG AG . B AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc9 B SG CYS 15 B CYS 15 1_555 H AG AG . B AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc10 G AG AG . B AG 101 1_555 N O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc11 C SG CYS 12 C CYS 12 1_555 J AG AG . C AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc12 C SG CYS 12 C CYS 12 1_555 K AG AG . D AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc13 C SG CYS 15 C CYS 15 1_555 I AG AG . C AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc14 C SG CYS 15 C CYS 15 1_555 J AG AG . C AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc15 I AG AG . C AG 101 1_555 D SG CYS 12 D CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc16 D SG CYS 12 D CYS 12 1_555 L AG AG . D AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc17 D SG CYS 15 D CYS 15 1_555 K AG AG . D AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc18 D SG CYS 15 D CYS 15 1_555 L AG AG . D AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? # _chem_comp.formula 'Ag 1' _chem_comp.formula_weight 107.868 _chem_comp.id AG _chem_comp.mon_nstd_flag . _chem_comp.name 'SILVER ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5F0W _atom_sites.fract_transf_matrix[1][1] 0.008889 _atom_sites.fract_transf_matrix[1][2] 0.005132 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AG A 1 101 2 AG AG . F 2 AG A 1 102 4 AG AG . G 2 AG B 1 101 1 AG AG . H 2 AG B 1 102 3 AG AG . I 2 AG C 1 101 6 AG AG . J 2 AG C 1 102 8 AG AG . K 2 AG D 1 101 5 AG AG . L 2 AG D 1 102 7 AG AG . M 3 HOH A 1 201 3 HOH HOH . M 3 HOH A 2 202 2 HOH HOH . M 3 HOH A 3 203 6 HOH HOH . M 3 HOH A 4 204 4 HOH HOH . N 3 HOH B 1 201 11 HOH HOH . N 3 HOH B 2 202 7 HOH HOH . N 3 HOH B 3 203 10 HOH HOH . N 3 HOH B 4 204 12 HOH HOH . O 3 HOH C 1 201 5 HOH HOH . P 3 HOH D 1 201 1 HOH HOH . P 3 HOH D 2 202 9 HOH HOH . P 3 HOH D 3 203 8 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AG _atom_site.label_atom_id AG _atom_site.label_comp_id AG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.852 _atom_site.Cartn_y -73.994 _atom_site.Cartn_z 10.909 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AG _atom_site.auth_comp_id AG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 443 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #