data_5F11 # _model_server_result.job_id Iuztol2W2cFApLbrFvZv_A _model_server_result.datetime_utc '2024-11-22 04:11:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5F11 # _exptl.entry_id 5F11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F11 _cell.length_a 117.533 _cell.length_b 64.897 _cell.length_c 41.953 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 302 A ALA 302 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 A O GLN 305 A GLN 305 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 A O GLY 307 A GLY 307 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc4 C NA NA . A NA 402 1_555 D O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id FRU _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-fructose;D-fructose;fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FRU sing 83 n n C1 O1 FRU sing 84 n n C1 H11 FRU sing 85 n n C1 H12 FRU sing 86 n n C2 C3 FRU sing 87 n n C2 O2 FRU sing 88 n n C2 O5 FRU sing 89 n n C3 C4 FRU sing 90 n n C3 O3 FRU sing 91 n n C3 H3 FRU sing 92 n n C4 C5 FRU sing 93 n n C4 O4 FRU sing 94 n n C4 H4 FRU sing 95 n n C5 C6 FRU sing 96 n n C5 O5 FRU sing 97 n n C5 H5 FRU sing 98 n n C6 O6 FRU sing 99 n n C6 H61 FRU sing 100 n n C6 H62 FRU sing 101 n n O1 HO1 FRU sing 102 n n O2 HO2 FRU sing 103 n n O3 HO3 FRU sing 104 n n O4 HO4 FRU sing 105 n n O6 HO6 FRU sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FRU DFrufb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FRU b-D-fructofuranose 'COMMON NAME' GMML 1 FRU b-D-Fruf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FRU Fru 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5F11 _atom_sites.fract_transf_matrix[1][1] 0.008508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FRU A 1 401 324 FRU FRU . C 3 NA A 1 402 325 NA NA . D 4 HOH A 1 501 107 HOH HOH . D 4 HOH A 2 502 101 HOH HOH . D 4 HOH A 3 503 69 HOH HOH . D 4 HOH A 4 504 123 HOH HOH . D 4 HOH A 5 505 85 HOH HOH . D 4 HOH A 6 506 68 HOH HOH . D 4 HOH A 7 507 186 HOH HOH . D 4 HOH A 8 508 141 HOH HOH . D 4 HOH A 9 509 106 HOH HOH . D 4 HOH A 10 510 191 HOH HOH . D 4 HOH A 11 511 60 HOH HOH . D 4 HOH A 12 512 188 HOH HOH . D 4 HOH A 13 513 78 HOH HOH . D 4 HOH A 14 514 30 HOH HOH . D 4 HOH A 15 515 143 HOH HOH . D 4 HOH A 16 516 165 HOH HOH . D 4 HOH A 17 517 47 HOH HOH . D 4 HOH A 18 518 181 HOH HOH . D 4 HOH A 19 519 98 HOH HOH . D 4 HOH A 20 520 160 HOH HOH . D 4 HOH A 21 521 50 HOH HOH . D 4 HOH A 22 522 65 HOH HOH . D 4 HOH A 23 523 38 HOH HOH . D 4 HOH A 24 524 136 HOH HOH . D 4 HOH A 25 525 64 HOH HOH . D 4 HOH A 26 526 21 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 153 HOH HOH . D 4 HOH A 29 529 91 HOH HOH . D 4 HOH A 30 530 88 HOH HOH . D 4 HOH A 31 531 24 HOH HOH . D 4 HOH A 32 532 167 HOH HOH . D 4 HOH A 33 533 1 HOH HOH . D 4 HOH A 34 534 9 HOH HOH . D 4 HOH A 35 535 171 HOH HOH . D 4 HOH A 36 536 42 HOH HOH . D 4 HOH A 37 537 40 HOH HOH . D 4 HOH A 38 538 135 HOH HOH . D 4 HOH A 39 539 23 HOH HOH . D 4 HOH A 40 540 4 HOH HOH . D 4 HOH A 41 541 129 HOH HOH . D 4 HOH A 42 542 14 HOH HOH . D 4 HOH A 43 543 6 HOH HOH . D 4 HOH A 44 544 177 HOH HOH . D 4 HOH A 45 545 151 HOH HOH . D 4 HOH A 46 546 25 HOH HOH . D 4 HOH A 47 547 17 HOH HOH . D 4 HOH A 48 548 56 HOH HOH . D 4 HOH A 49 549 185 HOH HOH . D 4 HOH A 50 550 13 HOH HOH . D 4 HOH A 51 551 131 HOH HOH . D 4 HOH A 52 552 48 HOH HOH . D 4 HOH A 53 553 81 HOH HOH . D 4 HOH A 54 554 117 HOH HOH . D 4 HOH A 55 555 49 HOH HOH . D 4 HOH A 56 556 3 HOH HOH . D 4 HOH A 57 557 34 HOH HOH . D 4 HOH A 58 558 95 HOH HOH . D 4 HOH A 59 559 172 HOH HOH . D 4 HOH A 60 560 46 HOH HOH . D 4 HOH A 61 561 103 HOH HOH . D 4 HOH A 62 562 169 HOH HOH . D 4 HOH A 63 563 202 HOH HOH . D 4 HOH A 64 564 29 HOH HOH . D 4 HOH A 65 565 114 HOH HOH . D 4 HOH A 66 566 45 HOH HOH . D 4 HOH A 67 567 53 HOH HOH . D 4 HOH A 68 568 41 HOH HOH . D 4 HOH A 69 569 16 HOH HOH . D 4 HOH A 70 570 96 HOH HOH . D 4 HOH A 71 571 35 HOH HOH . D 4 HOH A 72 572 187 HOH HOH . D 4 HOH A 73 573 2 HOH HOH . D 4 HOH A 74 574 126 HOH HOH . D 4 HOH A 75 575 70 HOH HOH . D 4 HOH A 76 576 174 HOH HOH . D 4 HOH A 77 577 102 HOH HOH . D 4 HOH A 78 578 31 HOH HOH . D 4 HOH A 79 579 71 HOH HOH . D 4 HOH A 80 580 84 HOH HOH . D 4 HOH A 81 581 122 HOH HOH . D 4 HOH A 82 582 173 HOH HOH . D 4 HOH A 83 583 203 HOH HOH . D 4 HOH A 84 584 67 HOH HOH . D 4 HOH A 85 585 7 HOH HOH . D 4 HOH A 86 586 22 HOH HOH . D 4 HOH A 87 587 61 HOH HOH . D 4 HOH A 88 588 36 HOH HOH . D 4 HOH A 89 589 74 HOH HOH . D 4 HOH A 90 590 51 HOH HOH . D 4 HOH A 91 591 94 HOH HOH . D 4 HOH A 92 592 92 HOH HOH . D 4 HOH A 93 593 80 HOH HOH . D 4 HOH A 94 594 76 HOH HOH . D 4 HOH A 95 595 54 HOH HOH . D 4 HOH A 96 596 204 HOH HOH . D 4 HOH A 97 597 124 HOH HOH . D 4 HOH A 98 598 87 HOH HOH . D 4 HOH A 99 599 83 HOH HOH . D 4 HOH A 100 600 196 HOH HOH . D 4 HOH A 101 601 63 HOH HOH . D 4 HOH A 102 602 112 HOH HOH . D 4 HOH A 103 603 205 HOH HOH . D 4 HOH A 104 604 18 HOH HOH . D 4 HOH A 105 605 139 HOH HOH . D 4 HOH A 106 606 100 HOH HOH . D 4 HOH A 107 607 133 HOH HOH . D 4 HOH A 108 608 57 HOH HOH . D 4 HOH A 109 609 90 HOH HOH . D 4 HOH A 110 610 55 HOH HOH . D 4 HOH A 111 611 93 HOH HOH . D 4 HOH A 112 612 73 HOH HOH . D 4 HOH A 113 613 175 HOH HOH . D 4 HOH A 114 614 170 HOH HOH . D 4 HOH A 115 615 11 HOH HOH . D 4 HOH A 116 616 121 HOH HOH . D 4 HOH A 117 617 79 HOH HOH . D 4 HOH A 118 618 89 HOH HOH . D 4 HOH A 119 619 144 HOH HOH . D 4 HOH A 120 620 145 HOH HOH . D 4 HOH A 121 621 33 HOH HOH . D 4 HOH A 122 622 111 HOH HOH . D 4 HOH A 123 623 195 HOH HOH . D 4 HOH A 124 624 15 HOH HOH . D 4 HOH A 125 625 8 HOH HOH . D 4 HOH A 126 626 66 HOH HOH . D 4 HOH A 127 627 208 HOH HOH . D 4 HOH A 128 628 110 HOH HOH . D 4 HOH A 129 629 44 HOH HOH . D 4 HOH A 130 630 72 HOH HOH . D 4 HOH A 131 631 116 HOH HOH . D 4 HOH A 132 632 10 HOH HOH . D 4 HOH A 133 633 104 HOH HOH . D 4 HOH A 134 634 113 HOH HOH . D 4 HOH A 135 635 207 HOH HOH . D 4 HOH A 136 636 43 HOH HOH . D 4 HOH A 137 637 105 HOH HOH . D 4 HOH A 138 638 198 HOH HOH . D 4 HOH A 139 639 20 HOH HOH . D 4 HOH A 140 640 27 HOH HOH . D 4 HOH A 141 641 157 HOH HOH . D 4 HOH A 142 642 194 HOH HOH . D 4 HOH A 143 643 176 HOH HOH . D 4 HOH A 144 644 130 HOH HOH . D 4 HOH A 145 645 99 HOH HOH . D 4 HOH A 146 646 166 HOH HOH . D 4 HOH A 147 647 26 HOH HOH . D 4 HOH A 148 648 39 HOH HOH . D 4 HOH A 149 649 140 HOH HOH . D 4 HOH A 150 650 206 HOH HOH . D 4 HOH A 151 651 108 HOH HOH . D 4 HOH A 152 652 148 HOH HOH . D 4 HOH A 153 653 168 HOH HOH . D 4 HOH A 154 654 19 HOH HOH . D 4 HOH A 155 655 59 HOH HOH . D 4 HOH A 156 656 37 HOH HOH . D 4 HOH A 157 657 149 HOH HOH . D 4 HOH A 158 658 12 HOH HOH . D 4 HOH A 159 659 77 HOH HOH . D 4 HOH A 160 660 180 HOH HOH . D 4 HOH A 161 661 189 HOH HOH . D 4 HOH A 162 662 125 HOH HOH . D 4 HOH A 163 663 210 HOH HOH . D 4 HOH A 164 664 199 HOH HOH . D 4 HOH A 165 665 182 HOH HOH . D 4 HOH A 166 666 58 HOH HOH . D 4 HOH A 167 667 120 HOH HOH . D 4 HOH A 168 668 142 HOH HOH . D 4 HOH A 169 669 192 HOH HOH . D 4 HOH A 170 670 132 HOH HOH . D 4 HOH A 171 671 62 HOH HOH . D 4 HOH A 172 672 119 HOH HOH . D 4 HOH A 173 673 200 HOH HOH . D 4 HOH A 174 674 138 HOH HOH . D 4 HOH A 175 675 197 HOH HOH . D 4 HOH A 176 676 146 HOH HOH . D 4 HOH A 177 677 156 HOH HOH . D 4 HOH A 178 678 159 HOH HOH . D 4 HOH A 179 679 32 HOH HOH . D 4 HOH A 180 680 97 HOH HOH . D 4 HOH A 181 681 127 HOH HOH . D 4 HOH A 182 682 147 HOH HOH . D 4 HOH A 183 683 75 HOH HOH . D 4 HOH A 184 684 201 HOH HOH . D 4 HOH A 185 685 82 HOH HOH . D 4 HOH A 186 686 118 HOH HOH . D 4 HOH A 187 687 52 HOH HOH . D 4 HOH A 188 688 86 HOH HOH . D 4 HOH A 189 689 109 HOH HOH . D 4 HOH A 190 690 134 HOH HOH . D 4 HOH A 191 691 209 HOH HOH . D 4 HOH A 192 692 178 HOH HOH . D 4 HOH A 193 693 193 HOH HOH . D 4 HOH A 194 694 161 HOH HOH . D 4 HOH A 195 695 152 HOH HOH . D 4 HOH A 196 696 179 HOH HOH . D 4 HOH A 197 697 190 HOH HOH . D 4 HOH A 198 698 128 HOH HOH . D 4 HOH A 199 699 150 HOH HOH . D 4 HOH A 200 700 183 HOH HOH . D 4 HOH A 201 701 184 HOH HOH . D 4 HOH A 202 702 115 HOH HOH . D 4 HOH A 203 703 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FRU . . . B 2 -8.791 10.16 -10.097 1 31.11 ? C1 FRU 401 A 1 HETATM 2 C C2 FRU . . . B 2 -8.602 10.64 -8.691 1 28.75 ? C2 FRU 401 A 1 HETATM 3 C C3 FRU . . . B 2 -8.761 9.502 -7.737 1 28.97 ? C3 FRU 401 A 1 HETATM 4 C C4 FRU . . . B 2 -9.273 10.181 -6.544 1 28.08 ? C4 FRU 401 A 1 HETATM 5 C C5 FRU . . . B 2 -10.201 11.152 -7.172 1 28.7 ? C5 FRU 401 A 1 HETATM 6 C C6 FRU . . . B 2 -10.436 12.266 -6.205 1 27.8 ? C6 FRU 401 A 1 HETATM 7 O O1 FRU . . . B 2 -10.069 9.679 -10.309 1 32.24 ? O1 FRU 401 A 1 HETATM 8 O O2 FRU . . . B 2 -7.335 11.198 -8.634 1 19.25 ? O2 FRU 401 A 1 HETATM 9 O O3 FRU . . . B 2 -7.583 8.847 -7.48 1 33.7 ? O3 FRU 401 A 1 HETATM 10 O O4 FRU . . . B 2 -9.937 9.335 -5.692 1 23.63 ? O4 FRU 401 A 1 HETATM 11 O O5 FRU . . . B 2 -9.58 11.594 -8.349 1 30.44 ? O5 FRU 401 A 1 HETATM 12 O O6 FRU . . . B 2 -11.054 13.349 -6.797 1 25.38 ? O6 FRU 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #