data_5F1G
#
_model_server_result.job_id            iH_SRCMR3kwFGp1HIVw8MA 
_model_server_result.datetime_utc      '2024-11-13 00:02:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f1g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5F1G 
#
_exptl.entry_id    5F1G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5F1G 
_cell.length_a            60.478 
_cell.length_b            65.414 
_cell.length_c            106.115 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F1G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             67 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              61 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            P 
_struct_conn.ptnr2_label_comp_id            AMP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             AMP 
_struct_conn.ptnr2_auth_seq_id              401 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.582 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 109 n n 
C1 C2 EDO sing 110 n n 
C1 H11 EDO sing 111 n n 
C1 H12 EDO sing 112 n n 
O1 HO1 EDO sing 113 n n 
C2 O2 EDO sing 114 n n 
C2 H21 EDO sing 115 n n 
C2 H22 EDO sing 116 n n 
O2 HO2 EDO sing 117 n n 
#
_atom_sites.entry_id                     5F1G 
_atom_sites.fract_transf_matrix[1][1]    0.016535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015287 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009424 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AMP A 1 401 401 AMP AMP . 
C 3 SO4 A 1 402 1 SO4 SO4 . 
D 4 EDO A 1 403 1 EDO EDO . 
E 4 EDO A 1 404 2 EDO EDO . 
F 5 HOH A 1 501 120 HOH HOH . 
F 5 HOH A 2 502 99 HOH HOH . 
F 5 HOH A 3 503 131 HOH HOH . 
F 5 HOH A 4 504 188 HOH HOH . 
F 5 HOH A 5 505 118 HOH HOH . 
F 5 HOH A 6 506 80 HOH HOH . 
F 5 HOH A 7 507 84 HOH HOH . 
F 5 HOH A 8 508 55 HOH HOH . 
F 5 HOH A 9 509 202 HOH HOH . 
F 5 HOH A 10 510 59 HOH HOH . 
F 5 HOH A 11 511 41 HOH HOH . 
F 5 HOH A 12 512 156 HOH HOH . 
F 5 HOH A 13 513 172 HOH HOH . 
F 5 HOH A 14 514 182 HOH HOH . 
F 5 HOH A 15 515 62 HOH HOH . 
F 5 HOH A 16 516 198 HOH HOH . 
F 5 HOH A 17 517 155 HOH HOH . 
F 5 HOH A 18 518 241 HOH HOH . 
F 5 HOH A 19 519 258 HOH HOH . 
F 5 HOH A 20 520 122 HOH HOH . 
F 5 HOH A 21 521 92 HOH HOH . 
F 5 HOH A 22 522 163 HOH HOH . 
F 5 HOH A 23 523 23 HOH HOH . 
F 5 HOH A 24 524 195 HOH HOH . 
F 5 HOH A 25 525 60 HOH HOH . 
F 5 HOH A 26 526 247 HOH HOH . 
F 5 HOH A 27 527 105 HOH HOH . 
F 5 HOH A 28 528 45 HOH HOH . 
F 5 HOH A 29 529 200 HOH HOH . 
F 5 HOH A 30 530 4 HOH HOH . 
F 5 HOH A 31 531 196 HOH HOH . 
F 5 HOH A 32 532 87 HOH HOH . 
F 5 HOH A 33 533 187 HOH HOH . 
F 5 HOH A 34 534 14 HOH HOH . 
F 5 HOH A 35 535 150 HOH HOH . 
F 5 HOH A 36 536 38 HOH HOH . 
F 5 HOH A 37 537 28 HOH HOH . 
F 5 HOH A 38 538 148 HOH HOH . 
F 5 HOH A 39 539 11 HOH HOH . 
F 5 HOH A 40 540 58 HOH HOH . 
F 5 HOH A 41 541 251 HOH HOH . 
F 5 HOH A 42 542 63 HOH HOH . 
F 5 HOH A 43 543 64 HOH HOH . 
F 5 HOH A 44 544 20 HOH HOH . 
F 5 HOH A 45 545 79 HOH HOH . 
F 5 HOH A 46 546 222 HOH HOH . 
F 5 HOH A 47 547 205 HOH HOH . 
F 5 HOH A 48 548 112 HOH HOH . 
F 5 HOH A 49 549 13 HOH HOH . 
F 5 HOH A 50 550 197 HOH HOH . 
F 5 HOH A 51 551 37 HOH HOH . 
F 5 HOH A 52 552 77 HOH HOH . 
F 5 HOH A 53 553 185 HOH HOH . 
F 5 HOH A 54 554 214 HOH HOH . 
F 5 HOH A 55 555 186 HOH HOH . 
F 5 HOH A 56 556 243 HOH HOH . 
F 5 HOH A 57 557 40 HOH HOH . 
F 5 HOH A 58 558 239 HOH HOH . 
F 5 HOH A 59 559 235 HOH HOH . 
F 5 HOH A 60 560 72 HOH HOH . 
F 5 HOH A 61 561 154 HOH HOH . 
F 5 HOH A 62 562 164 HOH HOH . 
F 5 HOH A 63 563 230 HOH HOH . 
F 5 HOH A 64 564 33 HOH HOH . 
F 5 HOH A 65 565 173 HOH HOH . 
F 5 HOH A 66 566 52 HOH HOH . 
F 5 HOH A 67 567 119 HOH HOH . 
F 5 HOH A 68 568 127 HOH HOH . 
F 5 HOH A 69 569 81 HOH HOH . 
F 5 HOH A 70 570 183 HOH HOH . 
F 5 HOH A 71 571 42 HOH HOH . 
F 5 HOH A 72 572 26 HOH HOH . 
F 5 HOH A 73 573 73 HOH HOH . 
F 5 HOH A 74 574 19 HOH HOH . 
F 5 HOH A 75 575 78 HOH HOH . 
F 5 HOH A 76 576 224 HOH HOH . 
F 5 HOH A 77 577 96 HOH HOH . 
F 5 HOH A 78 578 101 HOH HOH . 
F 5 HOH A 79 579 189 HOH HOH . 
F 5 HOH A 80 580 193 HOH HOH . 
F 5 HOH A 81 581 24 HOH HOH . 
F 5 HOH A 82 582 171 HOH HOH . 
F 5 HOH A 83 583 134 HOH HOH . 
F 5 HOH A 84 584 220 HOH HOH . 
F 5 HOH A 85 585 51 HOH HOH . 
F 5 HOH A 86 586 210 HOH HOH . 
F 5 HOH A 87 587 215 HOH HOH . 
F 5 HOH A 88 588 145 HOH HOH . 
F 5 HOH A 89 589 21 HOH HOH . 
F 5 HOH A 90 590 180 HOH HOH . 
F 5 HOH A 91 591 153 HOH HOH . 
F 5 HOH A 92 592 12 HOH HOH . 
F 5 HOH A 93 593 25 HOH HOH . 
F 5 HOH A 94 594 192 HOH HOH . 
F 5 HOH A 95 595 50 HOH HOH . 
F 5 HOH A 96 596 39 HOH HOH . 
F 5 HOH A 97 597 10 HOH HOH . 
F 5 HOH A 98 598 107 HOH HOH . 
F 5 HOH A 99 599 5 HOH HOH . 
F 5 HOH A 100 600 17 HOH HOH . 
F 5 HOH A 101 601 56 HOH HOH . 
F 5 HOH A 102 602 132 HOH HOH . 
F 5 HOH A 103 603 76 HOH HOH . 
F 5 HOH A 104 604 121 HOH HOH . 
F 5 HOH A 105 605 18 HOH HOH . 
F 5 HOH A 106 606 32 HOH HOH . 
F 5 HOH A 107 607 68 HOH HOH . 
F 5 HOH A 108 608 152 HOH HOH . 
F 5 HOH A 109 609 124 HOH HOH . 
F 5 HOH A 110 610 82 HOH HOH . 
F 5 HOH A 111 611 15 HOH HOH . 
F 5 HOH A 112 612 238 HOH HOH . 
F 5 HOH A 113 613 225 HOH HOH . 
F 5 HOH A 114 614 166 HOH HOH . 
F 5 HOH A 115 615 9 HOH HOH . 
F 5 HOH A 116 616 98 HOH HOH . 
F 5 HOH A 117 617 143 HOH HOH . 
F 5 HOH A 118 618 158 HOH HOH . 
F 5 HOH A 119 619 117 HOH HOH . 
F 5 HOH A 120 620 93 HOH HOH . 
F 5 HOH A 121 621 46 HOH HOH . 
F 5 HOH A 122 622 159 HOH HOH . 
F 5 HOH A 123 623 67 HOH HOH . 
F 5 HOH A 124 624 108 HOH HOH . 
F 5 HOH A 125 625 22 HOH HOH . 
F 5 HOH A 126 626 167 HOH HOH . 
F 5 HOH A 127 627 146 HOH HOH . 
F 5 HOH A 128 628 16 HOH HOH . 
F 5 HOH A 129 629 114 HOH HOH . 
F 5 HOH A 130 630 47 HOH HOH . 
F 5 HOH A 131 631 135 HOH HOH . 
F 5 HOH A 132 632 254 HOH HOH . 
F 5 HOH A 133 633 71 HOH HOH . 
F 5 HOH A 134 634 126 HOH HOH . 
F 5 HOH A 135 635 109 HOH HOH . 
F 5 HOH A 136 636 102 HOH HOH . 
F 5 HOH A 137 637 151 HOH HOH . 
F 5 HOH A 138 638 244 HOH HOH . 
F 5 HOH A 139 639 29 HOH HOH . 
F 5 HOH A 140 640 133 HOH HOH . 
F 5 HOH A 141 641 236 HOH HOH . 
F 5 HOH A 142 642 113 HOH HOH . 
F 5 HOH A 143 643 229 HOH HOH . 
F 5 HOH A 144 644 27 HOH HOH . 
F 5 HOH A 145 645 232 HOH HOH . 
F 5 HOH A 146 646 201 HOH HOH . 
F 5 HOH A 147 647 35 HOH HOH . 
F 5 HOH A 148 648 240 HOH HOH . 
F 5 HOH A 149 649 165 HOH HOH . 
F 5 HOH A 150 650 30 HOH HOH . 
F 5 HOH A 151 651 88 HOH HOH . 
F 5 HOH A 152 652 69 HOH HOH . 
F 5 HOH A 153 653 44 HOH HOH . 
F 5 HOH A 154 654 217 HOH HOH . 
F 5 HOH A 155 655 36 HOH HOH . 
F 5 HOH A 156 656 86 HOH HOH . 
F 5 HOH A 157 657 141 HOH HOH . 
F 5 HOH A 158 658 95 HOH HOH . 
F 5 HOH A 159 659 245 HOH HOH . 
F 5 HOH A 160 660 91 HOH HOH . 
F 5 HOH A 161 661 179 HOH HOH . 
F 5 HOH A 162 662 169 HOH HOH . 
F 5 HOH A 163 663 48 HOH HOH . 
F 5 HOH A 164 664 115 HOH HOH . 
F 5 HOH A 165 665 74 HOH HOH . 
F 5 HOH A 166 666 1 HOH HOH . 
F 5 HOH A 167 667 170 HOH HOH . 
F 5 HOH A 168 668 199 HOH HOH . 
F 5 HOH A 169 669 100 HOH HOH . 
F 5 HOH A 170 670 54 HOH HOH . 
F 5 HOH A 171 671 174 HOH HOH . 
F 5 HOH A 172 672 211 HOH HOH . 
F 5 HOH A 173 673 149 HOH HOH . 
F 5 HOH A 174 674 162 HOH HOH . 
F 5 HOH A 175 675 160 HOH HOH . 
F 5 HOH A 176 676 53 HOH HOH . 
F 5 HOH A 177 677 90 HOH HOH . 
F 5 HOH A 178 678 246 HOH HOH . 
F 5 HOH A 179 679 97 HOH HOH . 
F 5 HOH A 180 680 204 HOH HOH . 
F 5 HOH A 181 681 49 HOH HOH . 
F 5 HOH A 182 682 43 HOH HOH . 
F 5 HOH A 183 683 8 HOH HOH . 
F 5 HOH A 184 684 2 HOH HOH . 
F 5 HOH A 185 685 103 HOH HOH . 
F 5 HOH A 186 686 129 HOH HOH . 
F 5 HOH A 187 687 57 HOH HOH . 
F 5 HOH A 188 688 144 HOH HOH . 
F 5 HOH A 189 689 65 HOH HOH . 
F 5 HOH A 190 690 253 HOH HOH . 
F 5 HOH A 191 691 123 HOH HOH . 
F 5 HOH A 192 692 128 HOH HOH . 
F 5 HOH A 193 693 203 HOH HOH . 
F 5 HOH A 194 694 157 HOH HOH . 
F 5 HOH A 195 695 256 HOH HOH . 
F 5 HOH A 196 696 110 HOH HOH . 
F 5 HOH A 197 697 89 HOH HOH . 
F 5 HOH A 198 698 137 HOH HOH . 
F 5 HOH A 199 699 70 HOH HOH . 
F 5 HOH A 200 700 207 HOH HOH . 
F 5 HOH A 201 701 216 HOH HOH . 
F 5 HOH A 202 702 219 HOH HOH . 
F 5 HOH A 203 703 142 HOH HOH . 
F 5 HOH A 204 704 125 HOH HOH . 
F 5 HOH A 205 705 83 HOH HOH . 
F 5 HOH A 206 706 136 HOH HOH . 
F 5 HOH A 207 707 75 HOH HOH . 
F 5 HOH A 208 708 191 HOH HOH . 
F 5 HOH A 209 709 3 HOH HOH . 
F 5 HOH A 210 710 175 HOH HOH . 
F 5 HOH A 211 711 161 HOH HOH . 
F 5 HOH A 212 712 7 HOH HOH . 
F 5 HOH A 213 713 6 HOH HOH . 
F 5 HOH A 214 714 218 HOH HOH . 
F 5 HOH A 215 715 178 HOH HOH . 
F 5 HOH A 216 716 223 HOH HOH . 
F 5 HOH A 217 717 248 HOH HOH . 
F 5 HOH A 218 718 233 HOH HOH . 
F 5 HOH A 219 719 61 HOH HOH . 
F 5 HOH A 220 720 259 HOH HOH . 
F 5 HOH A 221 721 147 HOH HOH . 
F 5 HOH A 222 722 228 HOH HOH . 
F 5 HOH A 223 723 140 HOH HOH . 
F 5 HOH A 224 724 234 HOH HOH . 
F 5 HOH A 225 725 257 HOH HOH . 
F 5 HOH A 226 726 221 HOH HOH . 
F 5 HOH A 227 727 242 HOH HOH . 
F 5 HOH A 228 728 208 HOH HOH . 
F 5 HOH A 229 729 104 HOH HOH . 
F 5 HOH A 230 730 139 HOH HOH . 
F 5 HOH A 231 731 250 HOH HOH . 
F 5 HOH A 232 732 130 HOH HOH . 
F 5 HOH A 233 733 237 HOH HOH . 
F 5 HOH A 234 734 249 HOH HOH . 
F 5 HOH A 235 735 66 HOH HOH . 
F 5 HOH A 236 736 190 HOH HOH . 
F 5 HOH A 237 737 209 HOH HOH . 
F 5 HOH A 238 738 181 HOH HOH . 
F 5 HOH A 239 739 252 HOH HOH . 
F 5 HOH A 240 740 168 HOH HOH . 
F 5 HOH A 241 741 85 HOH HOH . 
F 5 HOH A 242 742 94 HOH HOH . 
F 5 HOH A 243 743 116 HOH HOH . 
F 5 HOH A 244 744 184 HOH HOH . 
F 5 HOH A 245 745 31 HOH HOH . 
F 5 HOH A 246 746 231 HOH HOH . 
F 5 HOH A 247 747 255 HOH HOH . 
F 5 HOH A 248 748 194 HOH HOH . 
F 5 HOH A 249 749 34 HOH HOH . 
F 5 HOH A 250 750 177 HOH HOH . 
F 5 HOH A 251 751 138 HOH HOH . 
F 5 HOH A 252 752 212 HOH HOH . 
F 5 HOH A 253 753 106 HOH HOH . 
F 5 HOH A 254 754 213 HOH HOH . 
F 5 HOH A 255 755 206 HOH HOH . 
F 5 HOH A 256 756 176 HOH HOH . 
F 5 HOH A 257 757 227 HOH HOH . 
F 5 HOH A 258 758 111 HOH HOH . 
F 5 HOH A 259 759 226 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -39.702 22.12 -5.576 1 33.73 ? C1 EDO 403 A 1 
HETATM 2 O O1 EDO . . . D 4 -40.042 23.435 -5.923 1 39.86 ? O1 EDO 403 A 1 
HETATM 3 C C2 EDO . . . D 4 -39.929 21.233 -6.791 1 32.41 ? C2 EDO 403 A 1 
HETATM 4 O O2 EDO . . . D 4 -40.146 19.901 -6.325 1 33.6 ? O2 EDO 403 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#