data_5F1H # _model_server_result.job_id Ep5eoyVvwRXF4JsDZSRPkQ _model_server_result.datetime_utc '2024-11-16 23:50:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5F1H # _exptl.entry_id 5F1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F1H _cell.length_a 70.03 _cell.length_b 125.358 _cell.length_c 29.681 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H23 N3 O3' _chem_comp.formula_weight 353.415 _chem_comp.id 5U6 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 O25 5U6 sing 1 n n O25 C17 5U6 sing 2 n n C13 C17 5U6 doub 3 n y C13 C21 5U6 sing 4 n y C17 C18 5U6 sing 5 n y C14 C21 5U6 sing 6 n n C14 N15 5U6 sing 7 n n C21 C20 5U6 doub 8 n y C16 N15 5U6 sing 9 n n C18 C10 5U6 sing 10 n n C18 C19 5U6 doub 11 n y N15 C24 5U6 sing 12 n n C1 C5 5U6 doub 13 n y C1 C2 5U6 sing 14 n y C10 C5 5U6 sing 15 n n C10 C9 5U6 doub 16 n n C20 C19 5U6 sing 17 n y C20 O22 5U6 sing 18 n n C5 C6 5U6 sing 19 n y C2 N3 5U6 doub 20 n y C9 N8 5U6 sing 21 n n C6 C4 5U6 doub 22 n y C6 C7 5U6 sing 23 n n N3 C4 5U6 sing 24 n y N8 C7 5U6 sing 25 n n N8 C12 5U6 sing 26 n n C7 O11 5U6 doub 27 n n O22 C23 5U6 sing 28 n n C4 H1 5U6 sing 29 n n C13 H2 5U6 sing 30 n n C24 H3 5U6 sing 31 n n C24 H4 5U6 sing 32 n n C24 H5 5U6 sing 33 n n C26 H6 5U6 sing 34 n n C26 H7 5U6 sing 35 n n C26 H8 5U6 sing 36 n n C1 H9 5U6 sing 37 n n C2 H10 5U6 sing 38 n n C16 H11 5U6 sing 39 n n C16 H12 5U6 sing 40 n n C16 H13 5U6 sing 41 n n C9 H14 5U6 sing 42 n n C12 H15 5U6 sing 43 n n C12 H16 5U6 sing 44 n n C12 H17 5U6 sing 45 n n C19 H18 5U6 sing 46 n n C14 H19 5U6 sing 47 n n C14 H20 5U6 sing 48 n n C23 H22 5U6 sing 49 n n C23 H23 5U6 sing 50 n n C23 H24 5U6 sing 51 n n # _atom_sites.entry_id 5F1H _atom_sites.fract_transf_matrix[1][1] 0.01428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5U6 A 1 201 2 5U6 LIG . D 2 5U6 B 1 201 1 5U6 LIG . E 3 HOH A 1 301 114 HOH HOH . E 3 HOH A 2 302 24 HOH HOH . E 3 HOH A 3 303 68 HOH HOH . E 3 HOH A 4 304 21 HOH HOH . E 3 HOH A 5 305 29 HOH HOH . E 3 HOH A 6 306 52 HOH HOH . E 3 HOH A 7 307 75 HOH HOH . E 3 HOH A 8 308 37 HOH HOH . E 3 HOH A 9 309 76 HOH HOH . E 3 HOH A 10 310 73 HOH HOH . E 3 HOH A 11 311 15 HOH HOH . E 3 HOH A 12 312 88 HOH HOH . E 3 HOH A 13 313 44 HOH HOH . E 3 HOH A 14 314 79 HOH HOH . E 3 HOH A 15 315 54 HOH HOH . E 3 HOH A 16 316 66 HOH HOH . E 3 HOH A 17 317 30 HOH HOH . E 3 HOH A 18 318 92 HOH HOH . E 3 HOH A 19 319 23 HOH HOH . E 3 HOH A 20 320 86 HOH HOH . E 3 HOH A 21 321 109 HOH HOH . E 3 HOH A 22 322 50 HOH HOH . E 3 HOH A 23 323 150 HOH HOH . E 3 HOH A 24 324 55 HOH HOH . E 3 HOH A 25 325 8 HOH HOH . E 3 HOH A 26 326 72 HOH HOH . E 3 HOH A 27 327 4 HOH HOH . E 3 HOH A 28 328 69 HOH HOH . E 3 HOH A 29 329 26 HOH HOH . E 3 HOH A 30 330 185 HOH HOH . E 3 HOH A 31 331 196 HOH HOH . E 3 HOH A 32 332 49 HOH HOH . E 3 HOH A 33 333 41 HOH HOH . E 3 HOH A 34 334 178 HOH HOH . E 3 HOH A 35 335 5 HOH HOH . E 3 HOH A 36 336 28 HOH HOH . E 3 HOH A 37 337 133 HOH HOH . E 3 HOH A 38 338 56 HOH HOH . E 3 HOH A 39 339 180 HOH HOH . E 3 HOH A 40 340 106 HOH HOH . E 3 HOH A 41 341 84 HOH HOH . E 3 HOH A 42 342 18 HOH HOH . E 3 HOH A 43 343 197 HOH HOH . E 3 HOH A 44 344 7 HOH HOH . E 3 HOH A 45 345 48 HOH HOH . E 3 HOH A 46 346 104 HOH HOH . E 3 HOH A 47 347 42 HOH HOH . E 3 HOH A 48 348 206 HOH HOH . E 3 HOH A 49 349 87 HOH HOH . E 3 HOH A 50 350 100 HOH HOH . E 3 HOH A 51 351 17 HOH HOH . E 3 HOH A 52 352 174 HOH HOH . E 3 HOH A 53 353 35 HOH HOH . E 3 HOH A 54 354 108 HOH HOH . E 3 HOH A 55 355 12 HOH HOH . E 3 HOH A 56 356 204 HOH HOH . E 3 HOH A 57 357 25 HOH HOH . E 3 HOH A 58 358 200 HOH HOH . E 3 HOH A 59 359 58 HOH HOH . E 3 HOH A 60 360 97 HOH HOH . E 3 HOH A 61 361 119 HOH HOH . E 3 HOH A 62 362 168 HOH HOH . E 3 HOH A 63 363 158 HOH HOH . E 3 HOH A 64 364 189 HOH HOH . E 3 HOH A 65 365 187 HOH HOH . E 3 HOH A 66 366 102 HOH HOH . E 3 HOH A 67 367 157 HOH HOH . E 3 HOH A 68 368 135 HOH HOH . E 3 HOH A 69 369 103 HOH HOH . E 3 HOH A 70 370 93 HOH HOH . E 3 HOH A 71 371 148 HOH HOH . E 3 HOH A 72 372 170 HOH HOH . E 3 HOH A 73 373 127 HOH HOH . E 3 HOH A 74 374 156 HOH HOH . E 3 HOH A 75 375 130 HOH HOH . E 3 HOH A 76 376 172 HOH HOH . E 3 HOH A 77 377 124 HOH HOH . E 3 HOH A 78 378 166 HOH HOH . E 3 HOH A 79 379 176 HOH HOH . E 3 HOH A 80 380 147 HOH HOH . E 3 HOH A 81 381 136 HOH HOH . E 3 HOH A 82 382 123 HOH HOH . E 3 HOH A 83 383 138 HOH HOH . E 3 HOH A 84 384 181 HOH HOH . E 3 HOH A 85 385 137 HOH HOH . E 3 HOH A 86 386 190 HOH HOH . E 3 HOH A 87 387 116 HOH HOH . E 3 HOH A 88 388 162 HOH HOH . E 3 HOH A 89 389 175 HOH HOH . E 3 HOH A 90 390 160 HOH HOH . E 3 HOH A 91 391 203 HOH HOH . E 3 HOH A 92 392 94 HOH HOH . E 3 HOH A 93 393 144 HOH HOH . E 3 HOH A 94 394 183 HOH HOH . E 3 HOH A 95 395 129 HOH HOH . E 3 HOH A 96 396 121 HOH HOH . E 3 HOH A 97 397 188 HOH HOH . E 3 HOH A 98 398 117 HOH HOH . E 3 HOH A 99 399 191 HOH HOH . E 3 HOH A 100 400 199 HOH HOH . E 3 HOH A 101 401 154 HOH HOH . E 3 HOH A 102 402 152 HOH HOH . E 3 HOH A 103 403 208 HOH HOH . F 3 HOH B 1 301 98 HOH HOH . F 3 HOH B 2 302 111 HOH HOH . F 3 HOH B 3 303 67 HOH HOH . F 3 HOH B 4 304 205 HOH HOH . F 3 HOH B 5 305 11 HOH HOH . F 3 HOH B 6 306 10 HOH HOH . F 3 HOH B 7 307 64 HOH HOH . F 3 HOH B 8 308 6 HOH HOH . F 3 HOH B 9 309 78 HOH HOH . F 3 HOH B 10 310 27 HOH HOH . F 3 HOH B 11 311 96 HOH HOH . F 3 HOH B 12 312 89 HOH HOH . F 3 HOH B 13 313 171 HOH HOH . F 3 HOH B 14 314 71 HOH HOH . F 3 HOH B 15 315 74 HOH HOH . F 3 HOH B 16 316 51 HOH HOH . F 3 HOH B 17 317 90 HOH HOH . F 3 HOH B 18 318 140 HOH HOH . F 3 HOH B 19 319 161 HOH HOH . F 3 HOH B 20 320 126 HOH HOH . F 3 HOH B 21 321 13 HOH HOH . F 3 HOH B 22 322 115 HOH HOH . F 3 HOH B 23 323 9 HOH HOH . F 3 HOH B 24 324 77 HOH HOH . F 3 HOH B 25 325 34 HOH HOH . F 3 HOH B 26 326 22 HOH HOH . F 3 HOH B 27 327 19 HOH HOH . F 3 HOH B 28 328 91 HOH HOH . F 3 HOH B 29 329 62 HOH HOH . F 3 HOH B 30 330 192 HOH HOH . F 3 HOH B 31 331 3 HOH HOH . F 3 HOH B 32 332 179 HOH HOH . F 3 HOH B 33 333 33 HOH HOH . F 3 HOH B 34 334 65 HOH HOH . F 3 HOH B 35 335 60 HOH HOH . F 3 HOH B 36 336 46 HOH HOH . F 3 HOH B 37 337 43 HOH HOH . F 3 HOH B 38 338 2 HOH HOH . F 3 HOH B 39 339 163 HOH HOH . F 3 HOH B 40 340 61 HOH HOH . F 3 HOH B 41 341 99 HOH HOH . F 3 HOH B 42 342 143 HOH HOH . F 3 HOH B 43 343 32 HOH HOH . F 3 HOH B 44 344 151 HOH HOH . F 3 HOH B 45 345 80 HOH HOH . F 3 HOH B 46 346 57 HOH HOH . F 3 HOH B 47 347 1 HOH HOH . F 3 HOH B 48 348 40 HOH HOH . F 3 HOH B 49 349 85 HOH HOH . F 3 HOH B 50 350 47 HOH HOH . F 3 HOH B 51 351 31 HOH HOH . F 3 HOH B 52 352 59 HOH HOH . F 3 HOH B 53 353 45 HOH HOH . F 3 HOH B 54 354 83 HOH HOH . F 3 HOH B 55 355 20 HOH HOH . F 3 HOH B 56 356 16 HOH HOH . F 3 HOH B 57 357 63 HOH HOH . F 3 HOH B 58 358 177 HOH HOH . F 3 HOH B 59 359 101 HOH HOH . F 3 HOH B 60 360 70 HOH HOH . F 3 HOH B 61 361 110 HOH HOH . F 3 HOH B 62 362 53 HOH HOH . F 3 HOH B 63 363 107 HOH HOH . F 3 HOH B 64 364 155 HOH HOH . F 3 HOH B 65 365 36 HOH HOH . F 3 HOH B 66 366 182 HOH HOH . F 3 HOH B 67 367 38 HOH HOH . F 3 HOH B 68 368 39 HOH HOH . F 3 HOH B 69 369 207 HOH HOH . F 3 HOH B 70 370 81 HOH HOH . F 3 HOH B 71 371 167 HOH HOH . F 3 HOH B 72 372 14 HOH HOH . F 3 HOH B 73 373 112 HOH HOH . F 3 HOH B 74 374 186 HOH HOH . F 3 HOH B 75 375 142 HOH HOH . F 3 HOH B 76 376 145 HOH HOH . F 3 HOH B 77 377 165 HOH HOH . F 3 HOH B 78 378 95 HOH HOH . F 3 HOH B 79 379 82 HOH HOH . F 3 HOH B 80 380 105 HOH HOH . F 3 HOH B 81 381 201 HOH HOH . F 3 HOH B 82 382 164 HOH HOH . F 3 HOH B 83 383 120 HOH HOH . F 3 HOH B 84 384 184 HOH HOH . F 3 HOH B 85 385 125 HOH HOH . F 3 HOH B 86 386 113 HOH HOH . F 3 HOH B 87 387 195 HOH HOH . F 3 HOH B 88 388 118 HOH HOH . F 3 HOH B 89 389 139 HOH HOH . F 3 HOH B 90 390 132 HOH HOH . F 3 HOH B 91 391 194 HOH HOH . F 3 HOH B 92 392 202 HOH HOH . F 3 HOH B 93 393 128 HOH HOH . F 3 HOH B 94 394 134 HOH HOH . F 3 HOH B 95 395 169 HOH HOH . F 3 HOH B 96 396 159 HOH HOH . F 3 HOH B 97 397 131 HOH HOH . F 3 HOH B 98 398 146 HOH HOH . F 3 HOH B 99 399 198 HOH HOH . F 3 HOH B 100 400 141 HOH HOH . F 3 HOH B 101 401 173 HOH HOH . F 3 HOH B 102 402 122 HOH HOH . F 3 HOH B 103 403 149 HOH HOH . F 3 HOH B 104 404 193 HOH HOH . F 3 HOH B 105 405 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5U6 . . . C 2 11.353 -7.899 4.274 1 41.58 ? N3 5U6 201 A 1 HETATM 2 C C4 5U6 . . . C 2 12.058 -6.781 4.387 1 40.88 ? C4 5U6 201 A 1 HETATM 3 C C5 5U6 . . . C 2 9.995 -5.511 4.61 1 41.69 ? C5 5U6 201 A 1 HETATM 4 C C6 5U6 . . . C 2 11.421 -5.544 4.568 1 39.84 ? C6 5U6 201 A 1 HETATM 5 C C7 5U6 . . . C 2 12.162 -4.275 4.698 1 38.48 ? C7 5U6 201 A 1 HETATM 6 C C10 5U6 . . . C 2 9.323 -4.201 4.778 1 43.88 ? C10 5U6 201 A 1 HETATM 7 C C13 5U6 . . . C 2 5.861 -3.407 6.12 1 51.54 ? C13 5U6 201 A 1 HETATM 8 C C17 5U6 . . . C 2 7.25 -3.47 6.015 1 48.46 ? C17 5U6 201 A 1 HETATM 9 C C20 5U6 . . . C 2 5.609 -4.537 4 1 53.79 ? C20 5U6 201 A 1 HETATM 10 C C21 5U6 . . . C 2 5.047 -3.906 5.115 1 54.57 ? C21 5U6 201 A 1 HETATM 11 C C24 5U6 . . . C 2 3.514 -1.462 4.488 1 59.52 ? C24 5U6 201 A 1 HETATM 12 C C26 5U6 . . . C 2 7.566 -1.819 7.753 1 44.19 ? C26 5U6 201 A 1 HETATM 13 C C18 5U6 . . . C 2 7.837 -4.089 4.886 1 47.91 ? C18 5U6 201 A 1 HETATM 14 C C1 5U6 . . . C 2 9.31 -6.732 4.485 1 40.36 ? C1 5U6 201 A 1 HETATM 15 N N8 5U6 . . . C 2 11.467 -3.108 4.807 1 38.23 ? N8 5U6 201 A 1 HETATM 16 C C2 5U6 . . . C 2 10.022 -7.899 4.326 1 41.61 ? C2 5U6 201 A 1 HETATM 17 C C16 5U6 . . . C 2 1.537 -2.838 4.307 1 61.02 ? C16 5U6 201 A 1 HETATM 18 O O25 5U6 . . . C 2 8.023 -2.957 7.019 1 45.32 ? O25 5U6 201 A 1 HETATM 19 C C9 5U6 . . . C 2 10.098 -3.076 4.852 1 40.95 ? C9 5U6 201 A 1 HETATM 20 C C12 5U6 . . . C 2 12.182 -1.835 4.946 1 35.01 ? C12 5U6 201 A 1 HETATM 21 C C19 5U6 . . . C 2 7.003 -4.604 3.88 1 50.58 ? C19 5U6 201 A 1 HETATM 22 C C14 5U6 . . . C 2 3.548 -3.776 5.27 1 57.62 ? C14 5U6 201 A 1 HETATM 23 O O22 5U6 . . . C 2 4.789 -5.014 3.007 1 53.41 ? O22 5U6 201 A 1 HETATM 24 N N15 5U6 . . . C 2 3.009 -2.827 4.281 1 59.68 ? N15 5U6 201 A 1 HETATM 25 O O11 5U6 . . . C 2 13.385 -4.282 4.688 1 38.43 ? O11 5U6 201 A 1 HETATM 26 C C23 5U6 . . . C 2 5.11 -6.244 2.346 1 51.49 ? C23 5U6 201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #