data_5F1J # _model_server_result.job_id A53raO0U78tcgTzgp0Pnng _model_server_result.datetime_utc '2024-10-20 00:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5F1J # _exptl.entry_id 5F1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.301 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-cyclopentyl-1-pyrrolidin-1-yl-propan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F1J _cell.length_a 121.81 _cell.length_b 121.81 _cell.length_c 33.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 121.81 121.81 16.865 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C12 H21 N O' _chem_comp.formula_weight 195.301 _chem_comp.id 5TO _chem_comp.mon_nstd_flag . _chem_comp.name 3-cyclopentyl-1-pyrrolidin-1-yl-propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAL 5TO doub 1 n n CAJ CAD 5TO sing 2 n n CAJ NAN 5TO sing 3 n n CAD CAE 5TO sing 4 n n CAL NAN 5TO sing 5 n n CAL CAF 5TO sing 6 n n NAN CAK 5TO sing 7 n n CAI CAF 5TO sing 8 n n CAI CAM 5TO sing 9 n n CAG CAM 5TO sing 10 n n CAG CAB 5TO sing 11 n n CAE CAK 5TO sing 12 n n CAM CAH 5TO sing 13 n n CAB CAC 5TO sing 14 n n CAH CAC 5TO sing 15 n n CAG H1 5TO sing 16 n n CAG H2 5TO sing 17 n n CAB H3 5TO sing 18 n n CAB H4 5TO sing 19 n n CAC H5 5TO sing 20 n n CAC H6 5TO sing 21 n n CAH H7 5TO sing 22 n n CAH H8 5TO sing 23 n n CAM H9 5TO sing 24 n n CAI H10 5TO sing 25 n n CAI H11 5TO sing 26 n n CAF H12 5TO sing 27 n n CAF H13 5TO sing 28 n n CAJ H14 5TO sing 29 n n CAJ H15 5TO sing 30 n n CAD H16 5TO sing 31 n n CAD H17 5TO sing 32 n n CAE H18 5TO sing 33 n n CAE H19 5TO sing 34 n n CAK H20 5TO sing 35 n n CAK H21 5TO sing 36 n n # _atom_sites.entry_id 5F1J _atom_sites.fract_transf_matrix[1][1] 0.00821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5TO A 1 301 1 5TO DRG . C 2 5TO A 1 302 1 5TO DRG . D 3 HOH A 1 401 299 HOH HOH . D 3 HOH A 2 402 401 HOH HOH . D 3 HOH A 3 403 336 HOH HOH . D 3 HOH A 4 404 326 HOH HOH . D 3 HOH A 5 405 382 HOH HOH . D 3 HOH A 6 406 367 HOH HOH . D 3 HOH A 7 407 295 HOH HOH . D 3 HOH A 8 408 383 HOH HOH . D 3 HOH A 9 409 275 HOH HOH . D 3 HOH A 10 410 356 HOH HOH . D 3 HOH A 11 411 285 HOH HOH . D 3 HOH A 12 412 318 HOH HOH . D 3 HOH A 13 413 348 HOH HOH . D 3 HOH A 14 414 290 HOH HOH . D 3 HOH A 15 415 339 HOH HOH . D 3 HOH A 16 416 242 HOH HOH . D 3 HOH A 17 417 321 HOH HOH . D 3 HOH A 18 418 387 HOH HOH . D 3 HOH A 19 419 324 HOH HOH . D 3 HOH A 20 420 353 HOH HOH . D 3 HOH A 21 421 338 HOH HOH . D 3 HOH A 22 422 386 HOH HOH . D 3 HOH A 23 423 243 HOH HOH . D 3 HOH A 24 424 343 HOH HOH . D 3 HOH A 25 425 264 HOH HOH . D 3 HOH A 26 426 313 HOH HOH . D 3 HOH A 27 427 254 HOH HOH . D 3 HOH A 28 428 365 HOH HOH . D 3 HOH A 29 429 300 HOH HOH . D 3 HOH A 30 430 239 HOH HOH . D 3 HOH A 31 431 283 HOH HOH . D 3 HOH A 32 432 265 HOH HOH . D 3 HOH A 33 433 397 HOH HOH . D 3 HOH A 34 434 376 HOH HOH . D 3 HOH A 35 435 364 HOH HOH . D 3 HOH A 36 436 244 HOH HOH . D 3 HOH A 37 437 311 HOH HOH . D 3 HOH A 38 438 347 HOH HOH . D 3 HOH A 39 439 325 HOH HOH . D 3 HOH A 40 440 306 HOH HOH . D 3 HOH A 41 441 241 HOH HOH . D 3 HOH A 42 442 351 HOH HOH . D 3 HOH A 43 443 248 HOH HOH . D 3 HOH A 44 444 268 HOH HOH . D 3 HOH A 45 445 271 HOH HOH . D 3 HOH A 46 446 307 HOH HOH . D 3 HOH A 47 447 327 HOH HOH . D 3 HOH A 48 448 301 HOH HOH . D 3 HOH A 49 449 245 HOH HOH . D 3 HOH A 50 450 238 HOH HOH . D 3 HOH A 51 451 291 HOH HOH . D 3 HOH A 52 452 278 HOH HOH . D 3 HOH A 53 453 250 HOH HOH . D 3 HOH A 54 454 312 HOH HOH . D 3 HOH A 55 455 297 HOH HOH . D 3 HOH A 56 456 258 HOH HOH . D 3 HOH A 57 457 276 HOH HOH . D 3 HOH A 58 458 394 HOH HOH . D 3 HOH A 59 459 260 HOH HOH . D 3 HOH A 60 460 340 HOH HOH . D 3 HOH A 61 461 266 HOH HOH . D 3 HOH A 62 462 320 HOH HOH . D 3 HOH A 63 463 390 HOH HOH . D 3 HOH A 64 464 328 HOH HOH . D 3 HOH A 65 465 315 HOH HOH . D 3 HOH A 66 466 399 HOH HOH . D 3 HOH A 67 467 341 HOH HOH . D 3 HOH A 68 468 310 HOH HOH . D 3 HOH A 69 469 251 HOH HOH . D 3 HOH A 70 470 344 HOH HOH . D 3 HOH A 71 471 309 HOH HOH . D 3 HOH A 72 472 330 HOH HOH . D 3 HOH A 73 473 287 HOH HOH . D 3 HOH A 74 474 252 HOH HOH . D 3 HOH A 75 475 270 HOH HOH . D 3 HOH A 76 476 396 HOH HOH . D 3 HOH A 77 477 305 HOH HOH . D 3 HOH A 78 478 253 HOH HOH . D 3 HOH A 79 479 370 HOH HOH . D 3 HOH A 80 480 288 HOH HOH . D 3 HOH A 81 481 256 HOH HOH . D 3 HOH A 82 482 400 HOH HOH . D 3 HOH A 83 483 342 HOH HOH . D 3 HOH A 84 484 292 HOH HOH . D 3 HOH A 85 485 393 HOH HOH . D 3 HOH A 86 486 246 HOH HOH . D 3 HOH A 87 487 273 HOH HOH . D 3 HOH A 88 488 303 HOH HOH . D 3 HOH A 89 489 249 HOH HOH . D 3 HOH A 90 490 329 HOH HOH . D 3 HOH A 91 491 277 HOH HOH . D 3 HOH A 92 492 240 HOH HOH . D 3 HOH A 93 493 366 HOH HOH . D 3 HOH A 94 494 302 HOH HOH . D 3 HOH A 95 495 293 HOH HOH . D 3 HOH A 96 496 281 HOH HOH . D 3 HOH A 97 497 316 HOH HOH . D 3 HOH A 98 498 286 HOH HOH . D 3 HOH A 99 499 362 HOH HOH . D 3 HOH A 100 500 255 HOH HOH . D 3 HOH A 101 501 272 HOH HOH . D 3 HOH A 102 502 319 HOH HOH . D 3 HOH A 103 503 335 HOH HOH . D 3 HOH A 104 504 368 HOH HOH . D 3 HOH A 105 505 355 HOH HOH . D 3 HOH A 106 506 332 HOH HOH . D 3 HOH A 107 507 263 HOH HOH . D 3 HOH A 108 508 304 HOH HOH . D 3 HOH A 109 509 359 HOH HOH . D 3 HOH A 110 510 369 HOH HOH . D 3 HOH A 111 511 269 HOH HOH . D 3 HOH A 112 512 379 HOH HOH . D 3 HOH A 113 513 350 HOH HOH . D 3 HOH A 114 514 267 HOH HOH . D 3 HOH A 115 515 371 HOH HOH . D 3 HOH A 116 516 294 HOH HOH . D 3 HOH A 117 517 398 HOH HOH . D 3 HOH A 118 518 378 HOH HOH . D 3 HOH A 119 519 262 HOH HOH . D 3 HOH A 120 520 284 HOH HOH . D 3 HOH A 121 521 331 HOH HOH . D 3 HOH A 122 522 289 HOH HOH . D 3 HOH A 123 523 373 HOH HOH . D 3 HOH A 124 524 280 HOH HOH . D 3 HOH A 125 525 298 HOH HOH . D 3 HOH A 126 526 333 HOH HOH . D 3 HOH A 127 527 375 HOH HOH . D 3 HOH A 128 528 296 HOH HOH . D 3 HOH A 129 529 380 HOH HOH . D 3 HOH A 130 530 308 HOH HOH . D 3 HOH A 131 531 354 HOH HOH . D 3 HOH A 132 532 349 HOH HOH . D 3 HOH A 133 533 279 HOH HOH . D 3 HOH A 134 534 391 HOH HOH . D 3 HOH A 135 535 392 HOH HOH . D 3 HOH A 136 536 334 HOH HOH . D 3 HOH A 137 537 257 HOH HOH . D 3 HOH A 138 538 345 HOH HOH . D 3 HOH A 139 539 274 HOH HOH . D 3 HOH A 140 540 389 HOH HOH . D 3 HOH A 141 541 317 HOH HOH . D 3 HOH A 142 542 358 HOH HOH . D 3 HOH A 143 543 352 HOH HOH . D 3 HOH A 144 544 346 HOH HOH . D 3 HOH A 145 545 377 HOH HOH . D 3 HOH A 146 546 314 HOH HOH . D 3 HOH A 147 547 372 HOH HOH . D 3 HOH A 148 548 282 HOH HOH . D 3 HOH A 149 549 388 HOH HOH . D 3 HOH A 150 550 259 HOH HOH . D 3 HOH A 151 551 337 HOH HOH . D 3 HOH A 152 552 322 HOH HOH . D 3 HOH A 153 553 261 HOH HOH . D 3 HOH A 154 554 374 HOH HOH . D 3 HOH A 155 555 395 HOH HOH . D 3 HOH A 156 556 381 HOH HOH . D 3 HOH A 157 557 363 HOH HOH . D 3 HOH A 158 558 360 HOH HOH . D 3 HOH A 159 559 402 HOH HOH . D 3 HOH A 160 560 384 HOH HOH . D 3 HOH A 161 561 357 HOH HOH . D 3 HOH A 162 562 361 HOH HOH . D 3 HOH A 163 563 385 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAG 5TO . . . C 2 24.249 83.708 9.654 1 24.1 ? CAG 5TO 302 A 1 HETATM 2 C CAB 5TO . . . C 2 23.862 84.268 11.063 1 26.83 ? CAB 5TO 302 A 1 HETATM 3 C CAC 5TO . . . C 2 24.9 85.393 11.309 1 25.62 ? CAC 5TO 302 A 1 HETATM 4 C CAH 5TO . . . C 2 26.196 85.04 10.47 1 26.51 ? CAH 5TO 302 A 1 HETATM 5 C CAM 5TO . . . C 2 25.792 83.726 9.779 1 24.3 ? CAM 5TO 302 A 1 HETATM 6 C CAI 5TO . . . C 2 26.478 83.494 8.409 1 26.78 ? CAI 5TO 302 A 1 HETATM 7 C CAF 5TO . . . C 2 27.857 82.881 8.725 1 29.03 ? CAF 5TO 302 A 1 HETATM 8 C CAL 5TO . . . C 2 28.374 82.453 7.411 1 27.66 ? CAL 5TO 302 A 1 HETATM 9 O OAA 5TO . . . C 2 28.816 83.324 6.678 1 29.83 ? OAA 5TO 302 A 1 HETATM 10 N NAN 5TO . . . C 2 28.291 81.244 6.976 1 23.46 ? NAN 5TO 302 A 1 HETATM 11 C CAJ 5TO . . . C 2 28.887 81.026 5.605 1 20.52 ? CAJ 5TO 302 A 1 HETATM 12 C CAD 5TO . . . C 2 28.525 79.611 5.449 1 20.72 ? CAD 5TO 302 A 1 HETATM 13 C CAE 5TO . . . C 2 28.621 78.922 6.761 1 22.28 ? CAE 5TO 302 A 1 HETATM 14 C CAK 5TO . . . C 2 27.973 79.964 7.662 1 21.65 ? CAK 5TO 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #