data_5F1R # _model_server_result.job_id KHZvkpBzuvftx53p3D87DA _model_server_result.datetime_utc '2025-01-11 07:10:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5F1R # _exptl.entry_id 5F1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.456 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{R})-8-cyclopropyl-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.54 _cell.angle_gamma 90 _cell.entry_id 5F1R _cell.length_a 56.34 _cell.length_b 80.97 _cell.length_c 62.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H19 N O3 S' _chem_comp.formula_weight 377.456 _chem_comp.id 42O _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{R})-8-cyclopropyl-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 42O doub 1 n y C20 C21 42O sing 2 n y C19 C18 42O sing 3 n y C21 C22 42O doub 4 n y C18 C17 42O doub 5 n y C18 C23 42O sing 6 n y C17 C16 42O sing 7 n y O26 C25 42O doub 8 n n C22 C23 42O sing 9 n y C23 C14 42O doub 10 n y C16 C15 42O doub 11 n y C25 C24 42O sing 12 n n C25 N27 42O sing 13 n n C24 C12 42O doub 14 n n C14 C15 42O sing 15 n y C14 C13 42O sing 16 n n O01 C02 42O doub 17 n n C02 C04 42O sing 18 n n C02 O03 42O sing 19 n n N27 C04 42O sing 20 n n N27 C07 42O sing 21 n n C04 C05 42O sing 22 n n C12 C13 42O sing 23 n n C12 C08 42O sing 24 n n C07 C08 42O doub 25 n n C07 S06 42O sing 26 n n C08 C09 42O sing 27 n n C05 S06 42O sing 28 n n C09 C10 42O sing 29 n n C09 C11 42O sing 30 n n C10 C11 42O sing 31 n n C04 H041 42O sing 32 n n C05 H052 42O sing 33 n n C05 H051 42O sing 34 n n C09 H091 42O sing 35 n n C10 H101 42O sing 36 n n C10 H102 42O sing 37 n n C11 H112 42O sing 38 n n C11 H111 42O sing 39 n n C13 H131 42O sing 40 n n C13 H132 42O sing 41 n n C15 H151 42O sing 42 n n C16 H161 42O sing 43 n n C17 H171 42O sing 44 n n C19 H191 42O sing 45 n n C20 H201 42O sing 46 n n C21 H211 42O sing 47 n n O03 H1 42O sing 48 n n C22 H221 42O sing 49 n n C24 H241 42O sing 50 n n # _atom_sites.entry_id 5F1R _atom_sites.fract_transf_matrix[1][1] 0.017749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007367 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 42O A 1 301 1 42O 42O . D 2 42O B 1 301 2 42O 42O . E 3 HOH A 1 401 14 HOH HOH . E 3 HOH A 2 402 16 HOH HOH . E 3 HOH A 3 403 1 HOH HOH . E 3 HOH A 4 404 12 HOH HOH . E 3 HOH A 5 405 13 HOH HOH . E 3 HOH A 6 406 22 HOH HOH . E 3 HOH A 7 407 21 HOH HOH . E 3 HOH A 8 408 6 HOH HOH . E 3 HOH A 9 409 5 HOH HOH . E 3 HOH A 10 410 18 HOH HOH . E 3 HOH A 11 411 15 HOH HOH . E 3 HOH A 12 412 19 HOH HOH . E 3 HOH A 13 413 20 HOH HOH . E 3 HOH A 14 414 8 HOH HOH . F 3 HOH B 1 401 2 HOH HOH . F 3 HOH B 2 402 7 HOH HOH . F 3 HOH B 3 403 11 HOH HOH . F 3 HOH B 4 404 9 HOH HOH . F 3 HOH B 5 405 10 HOH HOH . F 3 HOH B 6 406 4 HOH HOH . F 3 HOH B 7 407 17 HOH HOH . F 3 HOH B 8 408 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 42O . . . C 2 9.131 4.655 15.828 1 70.17 ? O01 42O 301 A 1 HETATM 2 C C02 42O . . . C 2 8.722 5.604 16.553 1 74.8 ? C02 42O 301 A 1 HETATM 3 C C04 42O . . . C 2 7.213 5.647 16.757 1 70.54 ? C04 42O 301 A 1 HETATM 4 C C05 42O . . . C 2 6.896 6.219 18.134 1 74.81 ? C05 42O 301 A 1 HETATM 5 C C07 42O . . . C 2 6.421 3.714 17.986 1 60.14 ? C07 42O 301 A 1 HETATM 6 C C08 42O . . . C 2 5.909 2.435 18.091 1 59.4 ? C08 42O 301 A 1 HETATM 7 C C09 42O . . . C 2 5.633 1.805 19.473 1 58.38 ? C09 42O 301 A 1 HETATM 8 C C10 42O . . . C 2 6.136 0.435 19.895 1 70.42 ? C10 42O 301 A 1 HETATM 9 C C11 42O . . . C 2 6.676 1.683 20.571 1 65.31 ? C11 42O 301 A 1 HETATM 10 C C12 42O . . . C 2 5.642 1.709 16.865 1 64.55 ? C12 42O 301 A 1 HETATM 11 C C13 42O . . . C 2 5.083 0.31 16.965 1 55.91 ? C13 42O 301 A 1 HETATM 12 C C14 42O . . . C 2 4.236 0.003 15.714 1 58.5 ? C14 42O 301 A 1 HETATM 13 C C15 42O . . . C 2 2.881 0.216 15.735 1 61.53 ? C15 42O 301 A 1 HETATM 14 C C16 42O . . . C 2 2.097 -0.058 14.607 1 65.77 ? C16 42O 301 A 1 HETATM 15 C C17 42O . . . C 2 2.682 -0.553 13.44 1 61.46 ? C17 42O 301 A 1 HETATM 16 C C18 42O . . . C 2 4.076 -0.78 13.398 1 58.84 ? C18 42O 301 A 1 HETATM 17 C C19 42O . . . C 2 4.689 -1.28 12.231 1 57.85 ? C19 42O 301 A 1 HETATM 18 C C20 42O . . . C 2 6.066 -1.497 12.208 1 75.77 ? C20 42O 301 A 1 HETATM 19 C C21 42O . . . C 2 6.841 -1.221 13.337 1 67.31 ? C21 42O 301 A 1 HETATM 20 O O03 42O . . . C 2 9.525 6.438 17.056 1 77.03 -1 O03 42O 301 A 1 HETATM 21 S S06 42O . . . C 2 6.835 4.815 19.276 1 65.79 ? S06 42O 301 A 1 HETATM 22 C C22 42O . . . C 2 6.249 -0.727 14.499 1 60.16 ? C22 42O 301 A 1 HETATM 23 C C23 42O . . . C 2 4.856 -0.498 14.546 1 54.89 ? C23 42O 301 A 1 HETATM 24 C C24 42O . . . C 2 5.892 2.282 15.675 1 67.39 ? C24 42O 301 A 1 HETATM 25 C C25 42O . . . C 2 6.415 3.589 15.532 1 68.62 ? C25 42O 301 A 1 HETATM 26 O O26 42O . . . C 2 6.652 4.135 14.467 1 78.97 ? O26 42O 301 A 1 HETATM 27 N N27 42O . . . C 2 6.667 4.279 16.724 1 63.54 ? N27 42O 301 A 1 HETATM 28 H H041 42O . . . C 2 6.969 6.219 15.994 1 84.65 ? H041 42O 301 A 1 HETATM 29 H H052 42O . . . C 2 6.017 6.659 18.11 1 89.77 ? H052 42O 301 A 1 HETATM 30 H H051 42O . . . C 2 7.614 6.83 18.407 1 89.77 ? H051 42O 301 A 1 HETATM 31 H H091 42O . . . C 2 4.736 1.999 19.831 1 70.06 ? H091 42O 301 A 1 HETATM 32 H H101 42O . . . C 2 6.749 -0.007 19.266 1 84.51 ? H101 42O 301 A 1 HETATM 33 H H102 42O . . . C 2 5.511 -0.103 20.431 1 84.51 ? H102 42O 301 A 1 HETATM 34 H H112 42O . . . C 2 7.592 1.941 20.322 1 78.37 ? H112 42O 301 A 1 HETATM 35 H H111 42O . . . C 2 6.354 1.845 21.487 1 78.37 ? H111 42O 301 A 1 HETATM 36 H H131 42O . . . C 2 5.822 -0.334 17.026 1 67.09 ? H131 42O 301 A 1 HETATM 37 H H132 42O . . . C 2 4.519 0.239 17.77 1 67.09 ? H132 42O 301 A 1 HETATM 38 H H151 42O . . . C 2 2.458 0.563 16.545 1 73.83 ? H151 42O 301 A 1 HETATM 39 H H161 42O . . . C 2 1.128 0.1 14.637 1 78.93 ? H161 42O 301 A 1 HETATM 40 H H171 42O . . . C 2 2.127 -0.743 12.653 1 73.75 ? H171 42O 301 A 1 HETATM 41 H H191 42O . . . C 2 4.147 -1.475 11.435 1 69.42 ? H191 42O 301 A 1 HETATM 42 H H201 42O . . . C 2 6.493 -1.845 11.395 1 90.92 ? H201 42O 301 A 1 HETATM 43 H H211 42O . . . C 2 7.81 -1.377 13.313 1 80.77 ? H211 42O 301 A 1 HETATM 44 H H221 42O . . . C 2 6.802 -0.537 15.285 1 72.19 ? H221 42O 301 A 1 HETATM 45 H H241 42O . . . C 2 5.701 1.767 14.862 1 80.87 ? H241 42O 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 45 #