data_5F1R # _model_server_result.job_id 2rNsxfbHQB6xmOkHhNs69A _model_server_result.datetime_utc '2025-01-11 06:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5F1R # _exptl.entry_id 5F1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.456 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{R})-8-cyclopropyl-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.54 _cell.angle_gamma 90 _cell.entry_id 5F1R _cell.length_a 56.34 _cell.length_b 80.97 _cell.length_c 62.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H19 N O3 S' _chem_comp.formula_weight 377.456 _chem_comp.id 42O _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{R})-8-cyclopropyl-7-(naphthalen-1-ylmethyl)-5-oxidanylidene-2,3-dihydro-[1,3]thiazolo[3,2-a]pyridine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 42O doub 1 n y C20 C21 42O sing 2 n y C19 C18 42O sing 3 n y C21 C22 42O doub 4 n y C18 C17 42O doub 5 n y C18 C23 42O sing 6 n y C17 C16 42O sing 7 n y O26 C25 42O doub 8 n n C22 C23 42O sing 9 n y C23 C14 42O doub 10 n y C16 C15 42O doub 11 n y C25 C24 42O sing 12 n n C25 N27 42O sing 13 n n C24 C12 42O doub 14 n n C14 C15 42O sing 15 n y C14 C13 42O sing 16 n n O01 C02 42O doub 17 n n C02 C04 42O sing 18 n n C02 O03 42O sing 19 n n N27 C04 42O sing 20 n n N27 C07 42O sing 21 n n C04 C05 42O sing 22 n n C12 C13 42O sing 23 n n C12 C08 42O sing 24 n n C07 C08 42O doub 25 n n C07 S06 42O sing 26 n n C08 C09 42O sing 27 n n C05 S06 42O sing 28 n n C09 C10 42O sing 29 n n C09 C11 42O sing 30 n n C10 C11 42O sing 31 n n C04 H041 42O sing 32 n n C05 H052 42O sing 33 n n C05 H051 42O sing 34 n n C09 H091 42O sing 35 n n C10 H101 42O sing 36 n n C10 H102 42O sing 37 n n C11 H112 42O sing 38 n n C11 H111 42O sing 39 n n C13 H131 42O sing 40 n n C13 H132 42O sing 41 n n C15 H151 42O sing 42 n n C16 H161 42O sing 43 n n C17 H171 42O sing 44 n n C19 H191 42O sing 45 n n C20 H201 42O sing 46 n n C21 H211 42O sing 47 n n O03 H1 42O sing 48 n n C22 H221 42O sing 49 n n C24 H241 42O sing 50 n n # _atom_sites.entry_id 5F1R _atom_sites.fract_transf_matrix[1][1] 0.017749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007367 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 42O A 1 301 1 42O 42O . D 2 42O B 1 301 2 42O 42O . E 3 HOH A 1 401 14 HOH HOH . E 3 HOH A 2 402 16 HOH HOH . E 3 HOH A 3 403 1 HOH HOH . E 3 HOH A 4 404 12 HOH HOH . E 3 HOH A 5 405 13 HOH HOH . E 3 HOH A 6 406 22 HOH HOH . E 3 HOH A 7 407 21 HOH HOH . E 3 HOH A 8 408 6 HOH HOH . E 3 HOH A 9 409 5 HOH HOH . E 3 HOH A 10 410 18 HOH HOH . E 3 HOH A 11 411 15 HOH HOH . E 3 HOH A 12 412 19 HOH HOH . E 3 HOH A 13 413 20 HOH HOH . E 3 HOH A 14 414 8 HOH HOH . F 3 HOH B 1 401 2 HOH HOH . F 3 HOH B 2 402 7 HOH HOH . F 3 HOH B 3 403 11 HOH HOH . F 3 HOH B 4 404 9 HOH HOH . F 3 HOH B 5 405 10 HOH HOH . F 3 HOH B 6 406 4 HOH HOH . F 3 HOH B 7 407 17 HOH HOH . F 3 HOH B 8 408 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 42O . . . D 2 -4.431 -4.162 33.839 1 73.34 ? O01 42O 301 B 1 HETATM 2 C C02 42O . . . D 2 -4.825 -2.976 33.665 1 94.19 ? C02 42O 301 B 1 HETATM 3 C C04 42O . . . D 2 -5.448 -2.705 32.3 1 93.16 ? C04 42O 301 B 1 HETATM 4 C C05 42O . . . D 2 -6.956 -2.914 32.372 1 91.69 ? C05 42O 301 B 1 HETATM 5 C C07 42O . . . D 2 -5.779 -4.751 31.045 1 80.03 ? C07 42O 301 B 1 HETATM 6 C C08 42O . . . D 2 -5.406 -5.725 30.139 1 78.68 ? C08 42O 301 B 1 HETATM 7 C C09 42O . . . D 2 -6.336 -6.918 29.833 1 84.04 ? C09 42O 301 B 1 HETATM 8 C C10 42O . . . D 2 -5.925 -8.373 29.987 1 67.04 ? C10 42O 301 B 1 HETATM 9 C C11 42O . . . D 2 -6.984 -7.782 30.902 1 71.93 ? C11 42O 301 B 1 HETATM 10 C C12 42O . . . D 2 -4.117 -5.588 29.49 1 77.04 ? C12 42O 301 B 1 HETATM 11 C C13 42O . . . D 2 -3.696 -6.646 28.497 1 65.3 ? C13 42O 301 B 1 HETATM 12 C C14 42O . . . D 2 -4.415 -6.407 27.154 1 60.36 ? C14 42O 301 B 1 HETATM 13 C C15 42O . . . D 2 -5.544 -7.121 26.844 1 67.81 ? C15 42O 301 B 1 HETATM 14 C C16 42O . . . D 2 -6.208 -6.916 25.628 1 65.43 ? C16 42O 301 B 1 HETATM 15 C C17 42O . . . D 2 -5.731 -5.98 24.709 1 69.19 ? C17 42O 301 B 1 HETATM 16 C C18 42O . . . D 2 -4.569 -5.234 25.008 1 55.11 ? C18 42O 301 B 1 HETATM 17 C C19 42O . . . D 2 -4.069 -4.282 24.095 1 65.6 ? C19 42O 301 B 1 HETATM 18 C C20 42O . . . D 2 -2.922 -3.556 24.409 1 71.68 ? C20 42O 301 B 1 HETATM 19 C C21 42O . . . D 2 -2.265 -3.766 25.624 1 74.41 ? C21 42O 301 B 1 HETATM 20 O O03 42O . . . D 2 -4.699 -2.103 34.567 1 98.73 -1 O03 42O 301 B 1 HETATM 21 S S06 42O . . . D 2 -7.257 -4.652 31.969 1 85.33 ? S06 42O 301 B 1 HETATM 22 C C22 42O . . . D 2 -2.748 -4.703 26.536 1 72.89 ? C22 42O 301 B 1 HETATM 23 C C23 42O . . . D 2 -3.908 -5.452 26.242 1 53.59 ? C23 42O 301 B 1 HETATM 24 C C24 42O . . . D 2 -3.327 -4.538 29.775 1 77.45 ? C24 42O 301 B 1 HETATM 25 C C25 42O . . . D 2 -3.679 -3.523 30.697 1 80.95 ? C25 42O 301 B 1 HETATM 26 O O26 42O . . . D 2 -2.985 -2.561 30.976 1 92.33 ? O26 42O 301 B 1 HETATM 27 N N27 42O . . . D 2 -4.927 -3.668 31.315 1 84.54 ? N27 42O 301 B 1 HETATM 28 H H041 42O . . . D 2 -5.154 -1.774 32.179 1 111.79 ? H041 42O 301 B 1 HETATM 29 H H052 42O . . . D 2 -7.397 -2.342 31.705 1 110.03 ? H052 42O 301 B 1 HETATM 30 H H051 42O . . . D 2 -7.267 -2.732 33.286 1 110.03 ? H051 42O 301 B 1 HETATM 31 H H091 42O . . . D 2 -6.928 -6.778 29.058 1 100.84 ? H091 42O 301 B 1 HETATM 32 H H101 42O . . . D 2 -5.046 -8.527 30.398 1 80.45 ? H101 42O 301 B 1 HETATM 33 H H102 42O . . . D 2 -6.256 -8.986 29.293 1 80.45 ? H102 42O 301 B 1 HETATM 34 H H112 42O . . . D 2 -6.698 -7.605 31.825 1 86.31 ? H112 42O 301 B 1 HETATM 35 H H111 42O . . . D 2 -7.909 -8.064 30.72 1 86.31 ? H111 42O 301 B 1 HETATM 36 H H131 42O . . . D 2 -2.725 -6.599 28.362 1 78.36 ? H131 42O 301 B 1 HETATM 37 H H132 42O . . . D 2 -3.937 -7.535 28.845 1 78.36 ? H132 42O 301 B 1 HETATM 38 H H151 42O . . . D 2 -5.889 -7.78 27.478 1 81.37 ? H151 42O 301 B 1 HETATM 39 H H161 42O . . . D 2 -7.015 -7.435 25.42 1 78.52 ? H161 42O 301 B 1 HETATM 40 H H171 42O . . . D 2 -6.201 -5.841 23.858 1 83.03 ? H171 42O 301 B 1 HETATM 41 H H191 42O . . . D 2 -4.528 -4.132 23.241 1 78.72 ? H191 42O 301 B 1 HETATM 42 H H201 42O . . . D 2 -2.573 -2.893 23.773 1 86.01 ? H201 42O 301 B 1 HETATM 43 H H211 42O . . . D 2 -1.457 -3.25 25.837 1 89.29 ? H211 42O 301 B 1 HETATM 44 H H221 42O . . . D 2 -2.279 -4.843 27.386 1 87.47 ? H221 42O 301 B 1 HETATM 45 H H241 42O . . . D 2 -2.46 -4.472 29.32 1 92.94 ? H241 42O 301 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #