data_5F2E # _model_server_result.job_id QWnbwvLkCbvenxcAx6h9Gg _model_server_result.datetime_utc '2024-11-28 08:56:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5f2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5F2E # _exptl.entry_id 5F2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5F2E _cell.length_a 39.11 _cell.length_b 43.08 _cell.length_c 93.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5F2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 E C15 5UT . A 5UT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 B MG MG . A MG 201 1_555 G O3B GDP . A GDP 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 B MG MG . A MG 201 1_555 H O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 B MG MG . A MG 201 1_555 H O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 B MG MG . A MG 201 1_555 H O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc6 B MG MG . A MG 201 1_555 H O HOH . A HOH 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 227 n n N H GLY sing 228 n n N H2 GLY sing 229 n n CA C GLY sing 230 n n CA HA2 GLY sing 231 n n CA HA3 GLY sing 232 n n C O GLY doub 233 n n C OXT GLY sing 234 n n OXT HXT GLY sing 235 n n # _atom_sites.entry_id 5F2E _atom_sites.fract_transf_matrix[1][1] 0.025569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 200 MG MG . C 3 GOL A 1 202 205 GOL GOL . D 3 GOL A 1 203 207 GOL GOL . E 4 5UT A 1 204 210 5UT 853 . F 5 GLY A 1 205 215 GLY GLY . G 6 GDP A 1 206 220 GDP GDP . H 7 HOH A 1 301 86 HOH HOH . H 7 HOH A 2 302 82 HOH HOH . H 7 HOH A 3 303 175 HOH HOH . H 7 HOH A 4 304 172 HOH HOH . H 7 HOH A 5 305 100 HOH HOH . H 7 HOH A 6 306 168 HOH HOH . H 7 HOH A 7 307 92 HOH HOH . H 7 HOH A 8 308 85 HOH HOH . H 7 HOH A 9 309 90 HOH HOH . H 7 HOH A 10 310 71 HOH HOH . H 7 HOH A 11 311 70 HOH HOH . H 7 HOH A 12 312 126 HOH HOH . H 7 HOH A 13 313 31 HOH HOH . H 7 HOH A 14 314 118 HOH HOH . H 7 HOH A 15 315 79 HOH HOH . H 7 HOH A 16 316 128 HOH HOH . H 7 HOH A 17 317 154 HOH HOH . H 7 HOH A 18 318 133 HOH HOH . H 7 HOH A 19 319 23 HOH HOH . H 7 HOH A 20 320 83 HOH HOH . H 7 HOH A 21 321 77 HOH HOH . H 7 HOH A 22 322 140 HOH HOH . H 7 HOH A 23 323 58 HOH HOH . H 7 HOH A 24 324 48 HOH HOH . H 7 HOH A 25 325 127 HOH HOH . H 7 HOH A 26 326 115 HOH HOH . H 7 HOH A 27 327 109 HOH HOH . H 7 HOH A 28 328 4 HOH HOH . H 7 HOH A 29 329 105 HOH HOH . H 7 HOH A 30 330 106 HOH HOH . H 7 HOH A 31 331 141 HOH HOH . H 7 HOH A 32 332 95 HOH HOH . H 7 HOH A 33 333 108 HOH HOH . H 7 HOH A 34 334 16 HOH HOH . H 7 HOH A 35 335 66 HOH HOH . H 7 HOH A 36 336 55 HOH HOH . H 7 HOH A 37 337 2 HOH HOH . H 7 HOH A 38 338 87 HOH HOH . H 7 HOH A 39 339 131 HOH HOH . H 7 HOH A 40 340 104 HOH HOH . H 7 HOH A 41 341 157 HOH HOH . H 7 HOH A 42 342 6 HOH HOH . H 7 HOH A 43 343 137 HOH HOH . H 7 HOH A 44 344 78 HOH HOH . H 7 HOH A 45 345 21 HOH HOH . H 7 HOH A 46 346 53 HOH HOH . H 7 HOH A 47 347 3 HOH HOH . H 7 HOH A 48 348 101 HOH HOH . H 7 HOH A 49 349 5 HOH HOH . H 7 HOH A 50 350 179 HOH HOH . H 7 HOH A 51 351 80 HOH HOH . H 7 HOH A 52 352 12 HOH HOH . H 7 HOH A 53 353 94 HOH HOH . H 7 HOH A 54 354 136 HOH HOH . H 7 HOH A 55 355 37 HOH HOH . H 7 HOH A 56 356 146 HOH HOH . H 7 HOH A 57 357 11 HOH HOH . H 7 HOH A 58 358 57 HOH HOH . H 7 HOH A 59 359 13 HOH HOH . H 7 HOH A 60 360 153 HOH HOH . H 7 HOH A 61 361 177 HOH HOH . H 7 HOH A 62 362 24 HOH HOH . H 7 HOH A 63 363 173 HOH HOH . H 7 HOH A 64 364 97 HOH HOH . H 7 HOH A 65 365 125 HOH HOH . H 7 HOH A 66 366 160 HOH HOH . H 7 HOH A 67 367 44 HOH HOH . H 7 HOH A 68 368 114 HOH HOH . H 7 HOH A 69 369 119 HOH HOH . H 7 HOH A 70 370 134 HOH HOH . H 7 HOH A 71 371 59 HOH HOH . H 7 HOH A 72 372 39 HOH HOH . H 7 HOH A 73 373 75 HOH HOH . H 7 HOH A 74 374 7 HOH HOH . H 7 HOH A 75 375 139 HOH HOH . H 7 HOH A 76 376 163 HOH HOH . H 7 HOH A 77 377 42 HOH HOH . H 7 HOH A 78 378 56 HOH HOH . H 7 HOH A 79 379 74 HOH HOH . H 7 HOH A 80 380 10 HOH HOH . H 7 HOH A 81 381 62 HOH HOH . H 7 HOH A 82 382 8 HOH HOH . H 7 HOH A 83 383 61 HOH HOH . H 7 HOH A 84 384 135 HOH HOH . H 7 HOH A 85 385 64 HOH HOH . H 7 HOH A 86 386 45 HOH HOH . H 7 HOH A 87 387 20 HOH HOH . H 7 HOH A 88 388 67 HOH HOH . H 7 HOH A 89 389 9 HOH HOH . H 7 HOH A 90 390 38 HOH HOH . H 7 HOH A 91 391 145 HOH HOH . H 7 HOH A 92 392 65 HOH HOH . H 7 HOH A 93 393 60 HOH HOH . H 7 HOH A 94 394 19 HOH HOH . H 7 HOH A 95 395 43 HOH HOH . H 7 HOH A 96 396 28 HOH HOH . H 7 HOH A 97 397 22 HOH HOH . H 7 HOH A 98 398 26 HOH HOH . H 7 HOH A 99 399 98 HOH HOH . H 7 HOH A 100 400 174 HOH HOH . H 7 HOH A 101 401 102 HOH HOH . H 7 HOH A 102 402 32 HOH HOH . H 7 HOH A 103 403 14 HOH HOH . H 7 HOH A 104 404 72 HOH HOH . H 7 HOH A 105 405 166 HOH HOH . H 7 HOH A 106 406 36 HOH HOH . H 7 HOH A 107 407 1 HOH HOH . H 7 HOH A 108 408 120 HOH HOH . H 7 HOH A 109 409 46 HOH HOH . H 7 HOH A 110 410 35 HOH HOH . H 7 HOH A 111 411 161 HOH HOH . H 7 HOH A 112 412 18 HOH HOH . H 7 HOH A 113 413 15 HOH HOH . H 7 HOH A 114 414 51 HOH HOH . H 7 HOH A 115 415 122 HOH HOH . H 7 HOH A 116 416 113 HOH HOH . H 7 HOH A 117 417 148 HOH HOH . H 7 HOH A 118 418 159 HOH HOH . H 7 HOH A 119 419 167 HOH HOH . H 7 HOH A 120 420 63 HOH HOH . H 7 HOH A 121 421 33 HOH HOH . H 7 HOH A 122 422 17 HOH HOH . H 7 HOH A 123 423 41 HOH HOH . H 7 HOH A 124 424 178 HOH HOH . H 7 HOH A 125 425 29 HOH HOH . H 7 HOH A 126 426 27 HOH HOH . H 7 HOH A 127 427 69 HOH HOH . H 7 HOH A 128 428 111 HOH HOH . H 7 HOH A 129 429 151 HOH HOH . H 7 HOH A 130 430 162 HOH HOH . H 7 HOH A 131 431 158 HOH HOH . H 7 HOH A 132 432 143 HOH HOH . H 7 HOH A 133 433 123 HOH HOH . H 7 HOH A 134 434 124 HOH HOH . H 7 HOH A 135 435 150 HOH HOH . H 7 HOH A 136 436 117 HOH HOH . H 7 HOH A 137 437 34 HOH HOH . H 7 HOH A 138 438 103 HOH HOH . H 7 HOH A 139 439 30 HOH HOH . H 7 HOH A 140 440 171 HOH HOH . H 7 HOH A 141 441 49 HOH HOH . H 7 HOH A 142 442 47 HOH HOH . H 7 HOH A 143 443 73 HOH HOH . H 7 HOH A 144 444 76 HOH HOH . H 7 HOH A 145 445 93 HOH HOH . H 7 HOH A 146 446 25 HOH HOH . H 7 HOH A 147 447 142 HOH HOH . H 7 HOH A 148 448 96 HOH HOH . H 7 HOH A 149 449 149 HOH HOH . H 7 HOH A 150 450 170 HOH HOH . H 7 HOH A 151 451 84 HOH HOH . H 7 HOH A 152 452 116 HOH HOH . H 7 HOH A 153 453 88 HOH HOH . H 7 HOH A 154 454 110 HOH HOH . H 7 HOH A 155 455 91 HOH HOH . H 7 HOH A 156 456 99 HOH HOH . H 7 HOH A 157 457 54 HOH HOH . H 7 HOH A 158 458 89 HOH HOH . H 7 HOH A 159 459 112 HOH HOH . H 7 HOH A 160 460 107 HOH HOH . H 7 HOH A 161 461 129 HOH HOH . H 7 HOH A 162 462 138 HOH HOH . H 7 HOH A 163 463 147 HOH HOH . H 7 HOH A 164 464 130 HOH HOH . H 7 HOH A 165 465 169 HOH HOH . H 7 HOH A 166 466 81 HOH HOH . H 7 HOH A 167 467 132 HOH HOH . H 7 HOH A 168 468 52 HOH HOH . H 7 HOH A 169 469 144 HOH HOH . H 7 HOH A 170 470 68 HOH HOH . H 7 HOH A 171 471 152 HOH HOH . H 7 HOH A 172 472 40 HOH HOH . H 7 HOH A 173 473 155 HOH HOH . H 7 HOH A 174 474 164 HOH HOH . H 7 HOH A 175 475 176 HOH HOH . H 7 HOH A 176 476 165 HOH HOH . H 7 HOH A 177 477 121 HOH HOH . H 7 HOH A 178 478 50 HOH HOH . H 7 HOH A 179 479 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . A . F 5 37.735 -6.971 -12.661 0.5 13.28 ? N GLY 205 A 1 HETATM 2 N N GLY . B . F 5 36.581 -8.332 -15.682 0.5 11.9 ? N GLY 205 A 1 HETATM 3 C CA GLY . A . F 5 36.682 -6.768 -13.755 0.5 12.43 ? CA GLY 205 A 1 HETATM 4 C CA GLY . B . F 5 35.956 -7.487 -14.793 0.5 9.28 ? CA GLY 205 A 1 HETATM 5 C C GLY . A . F 5 36.717 -5.506 -14.396 0.5 14.17 ? C GLY 205 A 1 HETATM 6 C C GLY . B . F 5 36.513 -6.429 -13.893 0.5 8.91 ? C GLY 205 A 1 HETATM 7 O O GLY . A . F 5 37.287 -5.398 -15.37 0.5 13.84 ? O GLY 205 A 1 HETATM 8 O O GLY . B . F 5 37.496 -6.77 -13.235 0.5 13.36 ? O GLY 205 A 1 HETATM 9 O OXT GLY . A . F 5 35.977 -4.526 -14.091 0.5 18.64 ? OXT GLY 205 A 1 HETATM 10 O OXT GLY . B . F 5 35.577 -5.583 -13.485 0.5 10.18 ? OXT GLY 205 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #