data_5F3D
#
_model_server_result.job_id            0YLmJMiDtTwK1COTOsnI-g 
_model_server_result.datetime_utc      '2024-11-08 06:06:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5f3d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5F3D 
#
_exptl.entry_id    5F3D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.4 
_cell.angle_gamma         90 
_cell.entry_id            5F3D 
_cell.length_a            53.902 
_cell.length_b            49.029 
_cell.length_c            60.52 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5F3D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 88 A CYS 81 1_555 B FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc2 A SG CYS 175 A CYS 168 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc3 A SG CYS 261 A CYS 254 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 B FE3 SF4 . A SF4 301 1_555 C OAB 5UK . A 5UK 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 312 n n 
FE1 S3 SF4 sing 313 n n 
FE1 S4 SF4 sing 314 n n 
FE2 S1 SF4 sing 315 n n 
FE2 S3 SF4 sing 316 n n 
FE2 S4 SF4 sing 317 n n 
FE3 S1 SF4 sing 318 n n 
FE3 S2 SF4 sing 319 n n 
FE3 S4 SF4 sing 320 n n 
FE4 S1 SF4 sing 321 n n 
FE4 S2 SF4 sing 322 n n 
FE4 S3 SF4 sing 323 n n 
#
_atom_sites.entry_id                     5F3D 
_atom_sites.fract_transf_matrix[1][1]    0.018552 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00511 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020396 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 301 301 SF4 SF4 . 
C 3 5UK A 1 302 302 5UK 5UK . 
D 4 SO4 A 1 303 303 SO4 SO4 . 
E 4 SO4 A 1 304 304 SO4 SO4 . 
F 4 SO4 A 1 305 305 SO4 SO4 . 
G 5 HOH A 1 401 10 HOH HOH . 
G 5 HOH A 2 402 54 HOH HOH . 
G 5 HOH A 3 403 24 HOH HOH . 
G 5 HOH A 4 404 284 HOH HOH . 
G 5 HOH A 5 405 53 HOH HOH . 
G 5 HOH A 6 406 26 HOH HOH . 
G 5 HOH A 7 407 203 HOH HOH . 
G 5 HOH A 8 408 137 HOH HOH . 
G 5 HOH A 9 409 80 HOH HOH . 
G 5 HOH A 10 410 27 HOH HOH . 
G 5 HOH A 11 411 142 HOH HOH . 
G 5 HOH A 12 412 130 HOH HOH . 
G 5 HOH A 13 413 3 HOH HOH . 
G 5 HOH A 14 414 45 HOH HOH . 
G 5 HOH A 15 415 136 HOH HOH . 
G 5 HOH A 16 416 28 HOH HOH . 
G 5 HOH A 17 417 222 HOH HOH . 
G 5 HOH A 18 418 4 HOH HOH . 
G 5 HOH A 19 419 15 HOH HOH . 
G 5 HOH A 20 420 268 HOH HOH . 
G 5 HOH A 21 421 57 HOH HOH . 
G 5 HOH A 22 422 47 HOH HOH . 
G 5 HOH A 23 423 6 HOH HOH . 
G 5 HOH A 24 424 110 HOH HOH . 
G 5 HOH A 25 425 20 HOH HOH . 
G 5 HOH A 26 426 111 HOH HOH . 
G 5 HOH A 27 427 12 HOH HOH . 
G 5 HOH A 28 428 184 HOH HOH . 
G 5 HOH A 29 429 25 HOH HOH . 
G 5 HOH A 30 430 238 HOH HOH . 
G 5 HOH A 31 431 2 HOH HOH . 
G 5 HOH A 32 432 94 HOH HOH . 
G 5 HOH A 33 433 58 HOH HOH . 
G 5 HOH A 34 434 187 HOH HOH . 
G 5 HOH A 35 435 81 HOH HOH . 
G 5 HOH A 36 436 66 HOH HOH . 
G 5 HOH A 37 437 213 HOH HOH . 
G 5 HOH A 38 438 195 HOH HOH . 
G 5 HOH A 39 439 46 HOH HOH . 
G 5 HOH A 40 440 95 HOH HOH . 
G 5 HOH A 41 441 9 HOH HOH . 
G 5 HOH A 42 442 13 HOH HOH . 
G 5 HOH A 43 443 166 HOH HOH . 
G 5 HOH A 44 444 144 HOH HOH . 
G 5 HOH A 45 445 288 HOH HOH . 
G 5 HOH A 46 446 173 HOH HOH . 
G 5 HOH A 47 447 141 HOH HOH . 
G 5 HOH A 48 448 89 HOH HOH . 
G 5 HOH A 49 449 5 HOH HOH . 
G 5 HOH A 50 450 51 HOH HOH . 
G 5 HOH A 51 451 11 HOH HOH . 
G 5 HOH A 52 452 113 HOH HOH . 
G 5 HOH A 53 453 107 HOH HOH . 
G 5 HOH A 54 454 41 HOH HOH . 
G 5 HOH A 55 455 37 HOH HOH . 
G 5 HOH A 56 456 188 HOH HOH . 
G 5 HOH A 57 457 92 HOH HOH . 
G 5 HOH A 58 458 167 HOH HOH . 
G 5 HOH A 59 459 17 HOH HOH . 
G 5 HOH A 60 460 85 HOH HOH . 
G 5 HOH A 61 461 223 HOH HOH . 
G 5 HOH A 62 462 70 HOH HOH . 
G 5 HOH A 63 463 114 HOH HOH . 
G 5 HOH A 64 464 127 HOH HOH . 
G 5 HOH A 65 465 93 HOH HOH . 
G 5 HOH A 66 466 62 HOH HOH . 
G 5 HOH A 67 467 36 HOH HOH . 
G 5 HOH A 68 468 8 HOH HOH . 
G 5 HOH A 69 469 72 HOH HOH . 
G 5 HOH A 70 470 120 HOH HOH . 
G 5 HOH A 71 471 115 HOH HOH . 
G 5 HOH A 72 472 181 HOH HOH . 
G 5 HOH A 73 473 98 HOH HOH . 
G 5 HOH A 74 474 16 HOH HOH . 
G 5 HOH A 75 475 121 HOH HOH . 
G 5 HOH A 76 476 116 HOH HOH . 
G 5 HOH A 77 477 100 HOH HOH . 
G 5 HOH A 78 478 101 HOH HOH . 
G 5 HOH A 79 479 88 HOH HOH . 
G 5 HOH A 80 480 161 HOH HOH . 
G 5 HOH A 81 481 287 HOH HOH . 
G 5 HOH A 82 482 87 HOH HOH . 
G 5 HOH A 83 483 151 HOH HOH . 
G 5 HOH A 84 484 206 HOH HOH . 
G 5 HOH A 85 485 61 HOH HOH . 
G 5 HOH A 86 486 112 HOH HOH . 
G 5 HOH A 87 487 198 HOH HOH . 
G 5 HOH A 88 488 42 HOH HOH . 
G 5 HOH A 89 489 192 HOH HOH . 
G 5 HOH A 90 490 237 HOH HOH . 
G 5 HOH A 91 491 104 HOH HOH . 
G 5 HOH A 92 492 208 HOH HOH . 
G 5 HOH A 93 493 126 HOH HOH . 
G 5 HOH A 94 494 154 HOH HOH . 
G 5 HOH A 95 495 33 HOH HOH . 
G 5 HOH A 96 496 260 HOH HOH . 
G 5 HOH A 97 497 171 HOH HOH . 
G 5 HOH A 98 498 169 HOH HOH . 
G 5 HOH A 99 499 123 HOH HOH . 
G 5 HOH A 100 500 109 HOH HOH . 
G 5 HOH A 101 501 86 HOH HOH . 
G 5 HOH A 102 502 231 HOH HOH . 
G 5 HOH A 103 503 286 HOH HOH . 
G 5 HOH A 104 504 18 HOH HOH . 
G 5 HOH A 105 505 32 HOH HOH . 
G 5 HOH A 106 506 1 HOH HOH . 
G 5 HOH A 107 507 248 HOH HOH . 
G 5 HOH A 108 508 190 HOH HOH . 
G 5 HOH A 109 509 60 HOH HOH . 
G 5 HOH A 110 510 140 HOH HOH . 
G 5 HOH A 111 511 285 HOH HOH . 
G 5 HOH A 112 512 83 HOH HOH . 
G 5 HOH A 113 513 23 HOH HOH . 
G 5 HOH A 114 514 246 HOH HOH . 
G 5 HOH A 115 515 22 HOH HOH . 
G 5 HOH A 116 516 39 HOH HOH . 
G 5 HOH A 117 517 65 HOH HOH . 
G 5 HOH A 118 518 30 HOH HOH . 
G 5 HOH A 119 519 118 HOH HOH . 
G 5 HOH A 120 520 29 HOH HOH . 
G 5 HOH A 121 521 156 HOH HOH . 
G 5 HOH A 122 522 49 HOH HOH . 
G 5 HOH A 123 523 227 HOH HOH . 
G 5 HOH A 124 524 228 HOH HOH . 
G 5 HOH A 125 525 129 HOH HOH . 
G 5 HOH A 126 526 242 HOH HOH . 
G 5 HOH A 127 527 157 HOH HOH . 
G 5 HOH A 128 528 14 HOH HOH . 
G 5 HOH A 129 529 131 HOH HOH . 
G 5 HOH A 130 530 108 HOH HOH . 
G 5 HOH A 131 531 43 HOH HOH . 
G 5 HOH A 132 532 175 HOH HOH . 
G 5 HOH A 133 533 79 HOH HOH . 
G 5 HOH A 134 534 276 HOH HOH . 
G 5 HOH A 135 535 35 HOH HOH . 
G 5 HOH A 136 536 152 HOH HOH . 
G 5 HOH A 137 537 240 HOH HOH . 
G 5 HOH A 138 538 55 HOH HOH . 
G 5 HOH A 139 539 262 HOH HOH . 
G 5 HOH A 140 540 250 HOH HOH . 
G 5 HOH A 141 541 134 HOH HOH . 
G 5 HOH A 142 542 71 HOH HOH . 
G 5 HOH A 143 543 159 HOH HOH . 
G 5 HOH A 144 544 174 HOH HOH . 
G 5 HOH A 145 545 147 HOH HOH . 
G 5 HOH A 146 546 91 HOH HOH . 
G 5 HOH A 147 547 56 HOH HOH . 
G 5 HOH A 148 548 263 HOH HOH . 
G 5 HOH A 149 549 258 HOH HOH . 
G 5 HOH A 150 550 21 HOH HOH . 
G 5 HOH A 151 551 239 HOH HOH . 
G 5 HOH A 152 552 176 HOH HOH . 
G 5 HOH A 153 553 145 HOH HOH . 
G 5 HOH A 154 554 186 HOH HOH . 
G 5 HOH A 155 555 281 HOH HOH . 
G 5 HOH A 156 556 148 HOH HOH . 
G 5 HOH A 157 557 119 HOH HOH . 
G 5 HOH A 158 558 225 HOH HOH . 
G 5 HOH A 159 559 124 HOH HOH . 
G 5 HOH A 160 560 244 HOH HOH . 
G 5 HOH A 161 561 50 HOH HOH . 
G 5 HOH A 162 562 19 HOH HOH . 
G 5 HOH A 163 563 105 HOH HOH . 
G 5 HOH A 164 564 207 HOH HOH . 
G 5 HOH A 165 565 252 HOH HOH . 
G 5 HOH A 166 566 210 HOH HOH . 
G 5 HOH A 167 567 217 HOH HOH . 
G 5 HOH A 168 568 44 HOH HOH . 
G 5 HOH A 169 569 34 HOH HOH . 
G 5 HOH A 170 570 117 HOH HOH . 
G 5 HOH A 171 571 122 HOH HOH . 
G 5 HOH A 172 572 96 HOH HOH . 
G 5 HOH A 173 573 272 HOH HOH . 
G 5 HOH A 174 574 205 HOH HOH . 
G 5 HOH A 175 575 245 HOH HOH . 
G 5 HOH A 176 576 241 HOH HOH . 
G 5 HOH A 177 577 194 HOH HOH . 
G 5 HOH A 178 578 125 HOH HOH . 
G 5 HOH A 179 579 150 HOH HOH . 
G 5 HOH A 180 580 249 HOH HOH . 
G 5 HOH A 181 581 164 HOH HOH . 
G 5 HOH A 182 582 133 HOH HOH . 
G 5 HOH A 183 583 282 HOH HOH . 
G 5 HOH A 184 584 76 HOH HOH . 
G 5 HOH A 185 585 253 HOH HOH . 
G 5 HOH A 186 586 7 HOH HOH . 
G 5 HOH A 187 587 59 HOH HOH . 
G 5 HOH A 188 588 40 HOH HOH . 
G 5 HOH A 189 589 153 HOH HOH . 
G 5 HOH A 190 590 196 HOH HOH . 
G 5 HOH A 191 591 274 HOH HOH . 
G 5 HOH A 192 592 48 HOH HOH . 
G 5 HOH A 193 593 202 HOH HOH . 
G 5 HOH A 194 594 178 HOH HOH . 
G 5 HOH A 195 595 271 HOH HOH . 
G 5 HOH A 196 596 31 HOH HOH . 
G 5 HOH A 197 597 264 HOH HOH . 
G 5 HOH A 198 598 158 HOH HOH . 
G 5 HOH A 199 599 236 HOH HOH . 
G 5 HOH A 200 600 97 HOH HOH . 
G 5 HOH A 201 601 254 HOH HOH . 
G 5 HOH A 202 602 163 HOH HOH . 
G 5 HOH A 203 603 160 HOH HOH . 
G 5 HOH A 204 604 261 HOH HOH . 
G 5 HOH A 205 605 219 HOH HOH . 
G 5 HOH A 206 606 197 HOH HOH . 
G 5 HOH A 207 607 103 HOH HOH . 
G 5 HOH A 208 608 67 HOH HOH . 
G 5 HOH A 209 609 38 HOH HOH . 
G 5 HOH A 210 610 84 HOH HOH . 
G 5 HOH A 211 611 273 HOH HOH . 
G 5 HOH A 212 612 182 HOH HOH . 
G 5 HOH A 213 613 90 HOH HOH . 
G 5 HOH A 214 614 234 HOH HOH . 
G 5 HOH A 215 615 149 HOH HOH . 
G 5 HOH A 216 616 138 HOH HOH . 
G 5 HOH A 217 617 211 HOH HOH . 
G 5 HOH A 218 618 172 HOH HOH . 
G 5 HOH A 219 619 168 HOH HOH . 
G 5 HOH A 220 620 99 HOH HOH . 
G 5 HOH A 221 621 77 HOH HOH . 
G 5 HOH A 222 622 146 HOH HOH . 
G 5 HOH A 223 623 69 HOH HOH . 
G 5 HOH A 224 624 64 HOH HOH . 
G 5 HOH A 225 625 216 HOH HOH . 
G 5 HOH A 226 626 243 HOH HOH . 
G 5 HOH A 227 627 52 HOH HOH . 
G 5 HOH A 228 628 201 HOH HOH . 
G 5 HOH A 229 629 132 HOH HOH . 
G 5 HOH A 230 630 256 HOH HOH . 
G 5 HOH A 231 631 63 HOH HOH . 
G 5 HOH A 232 632 279 HOH HOH . 
G 5 HOH A 233 633 73 HOH HOH . 
G 5 HOH A 234 634 179 HOH HOH . 
G 5 HOH A 235 635 139 HOH HOH . 
G 5 HOH A 236 636 215 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . B 2 15.362 -4.665 10.477 1 29.92 ? FE1 SF4 301 A 1 
HETATM 2 FE FE2 SF4 . . . B 2 13.987 -6.198 12.308 1 30.63 ? FE2 SF4 301 A 1 
HETATM 3 FE FE3 SF4 . . . B 2 13.793 -3.323 12.293 1 33.35 ? FE3 SF4 301 A 1 
HETATM 4 FE FE4 SF4 . . . B 2 16.027 -4.568 13.217 1 27.09 ? FE4 SF4 301 A 1 
HETATM 5 S S1 SF4 . . . B 2 14.032 -4.699 14.181 1 26.13 ? S1 SF4 301 A 1 
HETATM 6 S S2 SF4 . . . B 2 15.921 -2.746 11.625 1 28.29 ? S2 SF4 301 A 1 
HETATM 7 S S3 SF4 . . . B 2 16.164 -6.472 11.782 1 28.37 ? S3 SF4 301 A 1 
HETATM 8 S S4 SF4 . . . B 2 13.105 -4.883 10.574 1 30.96 ? S4 SF4 301 A 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#